data_6KPQ # _model_server_result.job_id m3k0BNZv4nIeEX2K2RmjKQ _model_server_result.datetime_utc '2024-11-08 22:26:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kpq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 6KPQ # _exptl.entry_id 6KPQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 658.835 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 1-[(10~{R},17~{S},20~{S})-17,20-bis(4-azanylbutyl)-4,9,16,19,22-pentakis(oxidanylidene)-3,8,15,18,21-pentazabicyclo[22.3.1]octacosa-1(27),24(28),25-trien-10-yl]guanidine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6KPQ _cell.length_a 42.586 _cell.length_b 42.586 _cell.length_c 214.18 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KPQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 144 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 143 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 144 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 143 _struct_conn.ptnr2_symmetry 8_444 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.024 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C32 H54 N10 O5' _chem_comp.formula_weight 658.835 _chem_comp.id DT0 _chem_comp.mon_nstd_flag . _chem_comp.name 1-[(10~{R},17~{S},20~{S})-17,20-bis(4-azanylbutyl)-4,9,16,19,22-pentakis(oxidanylidene)-3,8,15,18,21-pentazabicyclo[22.3.1]octacosa-1(27),24(28),25-trien-10-yl]guanidine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N15 C13 DT0 doub 83 n n C06 C07 DT0 sing 84 n n C06 C05 DT0 sing 85 n n C07 C08 DT0 sing 86 n n N12 C13 DT0 sing 87 n n N12 C11 DT0 sing 88 n n C13 N14 DT0 sing 89 n n N09 C08 DT0 sing 90 n n N09 C10 DT0 sing 91 n n C05 N04 DT0 sing 92 n n C05 O47 DT0 doub 93 n n C16 C11 DT0 sing 94 n n C16 C17 DT0 sing 95 n n N04 C03 DT0 sing 96 n n C11 C10 DT0 sing 97 n n C10 O46 DT0 doub 98 n n C18 C17 DT0 sing 99 n n C18 C19 DT0 sing 100 n n C03 C02 DT0 sing 101 n n C19 N20 DT0 sing 102 n n C02 C01 DT0 doub 103 n y C02 C43 DT0 sing 104 n y C01 C45 DT0 sing 105 n y C43 C42 DT0 doub 106 n y N20 C21 DT0 sing 107 n n O40 C39 DT0 doub 108 n n C45 C44 DT0 doub 109 n y C42 C44 DT0 sing 110 n y C42 C41 DT0 sing 111 n n O22 C21 DT0 doub 112 n n C21 C23 DT0 sing 113 n n C39 C41 DT0 sing 114 n n C39 N38 DT0 sing 115 n n O31 C30 DT0 doub 116 n n C30 C32 DT0 sing 117 n n C30 N29 DT0 sing 118 n n C32 N38 DT0 sing 119 n n C32 C33 DT0 sing 120 n n C23 N29 DT0 sing 121 n n C23 C24 DT0 sing 122 n n C33 C34 DT0 sing 123 n n C24 C25 DT0 sing 124 n n C34 C35 DT0 sing 125 n n C25 C26 DT0 sing 126 n n C35 C36 DT0 sing 127 n n C26 C27 DT0 sing 128 n n C36 N37 DT0 sing 129 n n C27 N28 DT0 sing 130 n n N12 H1 DT0 sing 131 n n C17 H2 DT0 sing 132 n n C17 H3 DT0 sing 133 n n C24 H4 DT0 sing 134 n n C24 H5 DT0 sing 135 n n C26 H6 DT0 sing 136 n n C26 H7 DT0 sing 137 n n C01 H8 DT0 sing 138 n n C03 H9 DT0 sing 139 n n C03 H10 DT0 sing 140 n n C06 H11 DT0 sing 141 n n C06 H12 DT0 sing 142 n n C07 H13 DT0 sing 143 n n C07 H14 DT0 sing 144 n n C08 H15 DT0 sing 145 n n C08 H16 DT0 sing 146 n n C11 H17 DT0 sing 147 n n C16 H18 DT0 sing 148 n n C16 H19 DT0 sing 149 n n C18 H20 DT0 sing 150 n n C18 H21 DT0 sing 151 n n C19 H22 DT0 sing 152 n n C23 H24 DT0 sing 153 n n C25 H25 DT0 sing 154 n n C25 H26 DT0 sing 155 n n C27 H27 DT0 sing 156 n n C27 H28 DT0 sing 157 n n C32 H29 DT0 sing 158 n n C33 H30 DT0 sing 159 n n C33 H31 DT0 sing 160 n n C34 H32 DT0 sing 161 n n C34 H33 DT0 sing 162 n n C35 H34 DT0 sing 163 n n C35 H35 DT0 sing 164 n n C36 H36 DT0 sing 165 n n C36 H37 DT0 sing 166 n n C41 H38 DT0 sing 167 n n C41 H39 DT0 sing 168 n n C43 H40 DT0 sing 169 n n C44 H41 DT0 sing 170 n n C45 H42 DT0 sing 171 n n N04 H43 DT0 sing 172 n n N09 H44 DT0 sing 173 n n N14 H45 DT0 sing 174 n n N14 H46 DT0 sing 175 n n N15 H47 DT0 sing 176 n n N20 H48 DT0 sing 177 n n N28 H49 DT0 sing 178 n n N28 H50 DT0 sing 179 n n N29 H52 DT0 sing 180 n n N37 H53 DT0 sing 181 n n N37 H54 DT0 sing 182 n n N38 H56 DT0 sing 183 n n C19 H23 DT0 sing 184 n n # _atom_sites.entry_id 6KPQ _atom_sites.fract_transf_matrix[1][1] 0.023482 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023482 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004669 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 DT0 B 1 201 201 DT0 LIG . D 4 HOH B 1 301 2 HOH HOH . D 4 HOH B 2 302 1 HOH HOH . D 4 HOH B 3 303 4 HOH HOH . D 4 HOH B 4 304 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 DT0 . . . C 3 -5.431 6.79 -18.532 1 62.81 ? C10 DT0 201 B 1 HETATM 2 N N12 DT0 . . . C 3 -4.584 4.992 -19.953 1 60.09 ? N12 DT0 201 B 1 HETATM 3 C C13 DT0 . . . C 3 -3.149 5.07 -19.774 1 61.57 ? C13 DT0 201 B 1 HETATM 4 C C17 DT0 . . . C 3 -7.934 5.271 -18.239 1 51.68 ? C17 DT0 201 B 1 HETATM 5 C C21 DT0 . . . C 3 -9.098 5.052 -14.983 1 58.87 ? C21 DT0 201 B 1 HETATM 6 C C24 DT0 . . . C 3 -9.017 5.2 -12.433 1 59.66 ? C24 DT0 201 B 1 HETATM 7 C C26 DT0 . . . C 3 -8.625 3.246 -10.823 1 53.13 ? C26 DT0 201 B 1 HETATM 8 C C01 DT0 . . . C 3 0.622 6.993 -16.425 1 81.71 ? C01 DT0 201 B 1 HETATM 9 C C02 DT0 . . . C 3 -0.429 7.783 -16.859 1 80.95 ? C02 DT0 201 B 1 HETATM 10 C C03 DT0 . . . C 3 -0.209 8.802 -17.98 1 79.54 ? C03 DT0 201 B 1 HETATM 11 C C05 DT0 . . . C 3 -2.108 9.579 -19.447 1 73.74 ? C05 DT0 201 B 1 HETATM 12 C C06 DT0 . . . C 3 -3.074 9.304 -20.599 1 70.67 ? C06 DT0 201 B 1 HETATM 13 C C07 DT0 . . . C 3 -4.414 9.956 -20.282 1 68.99 ? C07 DT0 201 B 1 HETATM 14 C C08 DT0 . . . C 3 -5.097 9.172 -19.164 1 68.87 ? C08 DT0 201 B 1 HETATM 15 C C11 DT0 . . . C 3 -5.488 5.295 -18.858 1 59.92 ? C11 DT0 201 B 1 HETATM 16 C C16 DT0 . . . C 3 -6.884 4.814 -19.247 1 55.98 ? C16 DT0 201 B 1 HETATM 17 C C18 DT0 . . . C 3 -9.223 4.468 -18.454 1 51.92 ? C18 DT0 201 B 1 HETATM 18 C C19 DT0 . . . C 3 -10.17 4.72 -17.27 1 57.16 ? C19 DT0 201 B 1 HETATM 19 C C23 DT0 . . . C 3 -8.528 4.471 -13.69 1 57.78 ? C23 DT0 201 B 1 HETATM 20 C C25 DT0 . . . C 3 -8.276 4.701 -11.184 1 54.45 ? C25 DT0 201 B 1 HETATM 21 C C27 DT0 . . . C 3 -8.028 2.967 -9.435 1 56.55 ? C27 DT0 201 B 1 HETATM 22 C C30 DT0 . . . C 3 -6.358 3.2 -13.767 1 55.42 ? C30 DT0 201 B 1 HETATM 23 C C32 DT0 . . . C 3 -4.831 3.121 -13.717 1 58.27 ? C32 DT0 201 B 1 HETATM 24 C C33 DT0 . . . C 3 -4.385 2.192 -12.564 1 58.33 ? C33 DT0 201 B 1 HETATM 25 C C34 DT0 . . . C 3 -2.913 2.284 -12.145 1 59.35 ? C34 DT0 201 B 1 HETATM 26 C C35 DT0 . . . C 3 -2.539 1.238 -11.074 1 57.81 ? C35 DT0 201 B 1 HETATM 27 C C36 DT0 . . . C 3 -1.35 1.752 -10.245 1 61.83 ? C36 DT0 201 B 1 HETATM 28 C C39 DT0 . . . C 3 -3.788 5.196 -14.817 1 66.33 ? C39 DT0 201 B 1 HETATM 29 C C41 DT0 . . . C 3 -3.249 6.607 -14.609 1 72.24 ? C41 DT0 201 B 1 HETATM 30 C C42 DT0 . . . C 3 -1.87 6.735 -15.248 1 78.32 ? C42 DT0 201 B 1 HETATM 31 C C43 DT0 . . . C 3 -1.676 7.652 -16.269 1 80.5 ? C43 DT0 201 B 1 HETATM 32 C C44 DT0 . . . C 3 -0.815 5.946 -14.812 1 79.95 ? C44 DT0 201 B 1 HETATM 33 C C45 DT0 . . . C 3 0.433 6.076 -15.401 1 80.88 ? C45 DT0 201 B 1 HETATM 34 N N04 DT0 . . . C 3 -1.141 8.561 -19.068 1 77.34 ? N04 DT0 201 B 1 HETATM 35 N N09 DT0 . . . C 3 -5.138 7.774 -19.553 1 68.71 ? N09 DT0 201 B 1 HETATM 36 N N14 DT0 . . . C 3 -2.654 5.385 -18.674 1 61.06 ? N14 DT0 201 B 1 HETATM 37 N N15 DT0 . . . C 3 -2.285 4.774 -20.894 1 65.44 ? N15 DT0 201 B 1 HETATM 38 N N20 DT0 . . . C 3 -9.627 4.179 -16.02 1 59 ? N20 DT0 201 B 1 HETATM 39 N N28 DT0 . . . C 3 -8.78 1.971 -8.679 1 56.22 ? N28 DT0 201 B 1 HETATM 40 N N29 DT0 . . . C 3 -7.072 4.458 -13.666 1 57.03 ? N29 DT0 201 B 1 HETATM 41 N N37 DT0 . . . C 3 -1.559 1.596 -8.81 1 68.78 ? N37 DT0 201 B 1 HETATM 42 N N38 DT0 . . . C 3 -4.295 4.472 -13.639 1 62.35 ? N38 DT0 201 B 1 HETATM 43 O O22 DT0 . . . C 3 -9.102 6.226 -15.142 1 61.67 ? O22 DT0 201 B 1 HETATM 44 O O31 DT0 . . . C 3 -6.986 2.207 -13.889 1 55 ? O31 DT0 201 B 1 HETATM 45 O O40 DT0 . . . C 3 -3.776 4.737 -15.916 1 62.46 ? O40 DT0 201 B 1 HETATM 46 O O46 DT0 . . . C 3 -5.617 7.178 -17.439 1 62.82 ? O46 DT0 201 B 1 HETATM 47 O O47 DT0 . . . C 3 -2.148 10.615 -18.867 1 72.84 ? O47 DT0 201 B 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 47 #