data_6KQE
#
_model_server_result.job_id            OO5ZtdO5tcsTjxSk8ZpLtg 
_model_server_result.datetime_utc      '2025-03-04 17:06:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6kqe 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":2003}' 
#
_entry.id    6KQE 
#
_exptl.entry_id    6KQE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          9 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.7 
_cell.angle_gamma         90 
_cell.entry_id            6KQE 
_cell.length_a            184.567 
_cell.length_b            103.757 
_cell.length_c            295.981 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6KQE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    nonameric 
_pdbx_struct_assembly.oligomeric_count      9 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 9 J N N 
? 9 M N N 
? 9 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B OD2 ASP 183 B ASP 183 1_555 J MG MG . B MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? 
metalc ? metalc2 B O ASP 191 B ASP 191 1_555 J MG MG . B MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.85 ? 
metalc ? metalc3 B OD1 ASP 191 B ASP 191 1_555 J MG MG . B MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? 
metalc ? metalc4 D SG CYS 58 D CYS 58 1_555 L ZN ZN . D ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? 
metalc ? metalc5 D SG CYS 60 D CYS 60 1_555 L ZN ZN . D ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc6 D SG CYS 73 D CYS 73 1_555 L ZN ZN . D ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
metalc ? metalc7 D SG CYS 76 D CYS 76 1_555 L ZN ZN . D ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? 
metalc ? metalc8 D OD1 ASP 739 D ASP 739 1_555 M MG MG . D MG 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? 
metalc ? metalc9 D OD1 ASP 741 D ASP 741 1_555 M MG MG . D MG 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? 
metalc ? metalc10 D OD2 ASP 741 D ASP 741 1_555 M MG MG . D MG 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? 
metalc ? metalc11 D OD1 ASP 743 D ASP 743 1_555 M MG MG . D MG 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? 
metalc ? metalc12 D O LYS 840 D LYS 840 1_555 N MG MG . D MG 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? 
metalc ? metalc13 D SG CYS 1112 D CYS 1112 1_555 K ZN ZN . D ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? 
metalc ? metalc14 D SG CYS 1194 D CYS 1194 1_555 K ZN ZN . D ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? 
metalc ? metalc15 D SG CYS 1201 D CYS 1201 1_555 K ZN ZN . D ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? 
metalc ? metalc16 D SG CYS 1204 D CYS 1204 1_555 K ZN ZN . D ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? 
metalc ? metalc17 M MG MG . D MG 2003 1_555 R O HOH . D HOH 2101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
metalc ? metalc18 M MG MG . D MG 2003 1_555 I O3' A 4 I A 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
hydrog WATSON-CRICK hydrog1 G N1 DG 4 G DG 4 1_555 H N3 DC 24 H DC 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 G N2 DG 4 G DG 4 1_555 H O2 DC 24 H DC 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 G O6 DG 4 G DG 4 1_555 H N4 DC 24 H DC 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 G N3 DC 5 G DC 5 1_555 H N1 DG 23 H DG 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 G N4 DC 5 G DC 5 1_555 H O6 DG 23 H DG 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 G O2 DC 5 G DC 5 1_555 H N2 DG 23 H DG 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 G N1 DA 6 G DA 6 1_555 H N3 DT 22 H DT 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 G N6 DA 6 G DA 6 1_555 H O4 DT 22 H DT 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 G N3 DT 7 G DT 7 1_555 H N1 DA 21 H DA 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 G O4 DT 7 G DT 7 1_555 H N6 DA 21 H DA 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'DC-DG PAIR' hydrog11 G O2 DC 8 G DC 8 1_555 H N2 DG 20 H DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 G N3 DC 9 G DC 9 1_555 H N1 DG 19 H DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 G N4 DC 9 G DC 9 1_555 H O6 DG 19 H DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 G O2 DC 9 G DC 9 1_555 H N2 DG 19 H DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 G N1 DG 10 G DG 10 1_555 H N3 DC 18 H DC 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 G N2 DG 10 G DG 10 1_555 H O2 DC 18 H DC 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog17 G O6 DG 10 G DG 10 1_555 H N4 DC 18 H DC 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'DT-DA PAIR' hydrog18 G N3 DT 11 G DT 11 1_555 H N1 DA 17 H DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'DG-DC PAIR' hydrog19 G N2 DG 12 G DG 12 1_555 H O2 DC 16 H DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog20 G N1 DA 13 G DA 13 1_555 H N3 DT 15 H DT 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog21 G N6 DA 13 G DA 13 1_555 H O4 DT 15 H DT 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog22 G N3 DT 15 G DT 15 1_555 I N1 A 4 I A 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog23 G O4 DT 15 G DT 15 1_555 I N6 A 4 I A 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog24 G N3 DC 16 G DC 16 1_555 I N1 G 3 I G 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog25 G N4 DC 16 G DC 16 1_555 I O6 G 3 I G 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog26 G O2 DC 16 G DC 16 1_555 I N2 G 3 I G 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog27 G N1 DG 17 G DG 17 1_555 I N3 C 2 I C 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog28 G N2 DG 17 G DG 17 1_555 I O2 C 2 I C 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog29 G O6 DG 17 G DG 17 1_555 I N4 C 2 I C 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog30 G N1 DA 18 G DA 18 1_555 I N3 U 1 I U 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog31 G N6 DA 18 G DA 18 1_555 I O4 U 1 I U 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6KQE 
_atom_sites.fract_transf_matrix[1][1]    0.005418 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000829 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009638 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003418 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
J 9 MG B 1 2001 2001 MG MG . 
K 10 ZN D 1 2001 2001 ZN ZN . 
L 10 ZN D 1 2002 2002 ZN ZN . 
M 9 MG D 1 2003 2003 MG MG . 
N 9 MG D 1 2004 2004 MG MG . 
O 11 HOH A 1 401 82 HOH HOH . 
O 11 HOH A 2 402 121 HOH HOH . 
O 11 HOH A 3 403 14 HOH HOH . 
O 11 HOH A 4 404 48 HOH HOH . 
O 11 HOH A 5 405 74 HOH HOH . 
O 11 HOH A 6 406 83 HOH HOH . 
O 11 HOH A 7 407 123 HOH HOH . 
O 11 HOH A 8 408 9 HOH HOH . 
P 11 HOH B 1 2101 56 HOH HOH . 
P 11 HOH B 2 2102 1 HOH HOH . 
P 11 HOH B 3 2103 23 HOH HOH . 
P 11 HOH B 4 2104 122 HOH HOH . 
Q 11 HOH C 1 1201 44 HOH HOH . 
Q 11 HOH C 2 1202 79 HOH HOH . 
Q 11 HOH C 3 1203 8 HOH HOH . 
Q 11 HOH C 4 1204 7 HOH HOH . 
Q 11 HOH C 5 1205 126 HOH HOH . 
Q 11 HOH C 6 1206 12 HOH HOH . 
Q 11 HOH C 7 1207 6 HOH HOH . 
Q 11 HOH C 8 1208 81 HOH HOH . 
Q 11 HOH C 9 1209 5 HOH HOH . 
Q 11 HOH C 10 1210 70 HOH HOH . 
Q 11 HOH C 11 1211 43 HOH HOH . 
Q 11 HOH C 12 1212 110 HOH HOH . 
Q 11 HOH C 13 1213 64 HOH HOH . 
Q 11 HOH C 14 1214 111 HOH HOH . 
Q 11 HOH C 15 1215 107 HOH HOH . 
Q 11 HOH C 16 1216 29 HOH HOH . 
Q 11 HOH C 17 1217 36 HOH HOH . 
Q 11 HOH C 18 1218 97 HOH HOH . 
Q 11 HOH C 19 1219 47 HOH HOH . 
Q 11 HOH C 20 1220 86 HOH HOH . 
Q 11 HOH C 21 1221 101 HOH HOH . 
Q 11 HOH C 22 1222 49 HOH HOH . 
Q 11 HOH C 23 1223 85 HOH HOH . 
R 11 HOH D 1 2101 125 HOH HOH . 
R 11 HOH D 2 2102 16 HOH HOH . 
R 11 HOH D 3 2103 2 HOH HOH . 
R 11 HOH D 4 2104 34 HOH HOH . 
R 11 HOH D 5 2105 51 HOH HOH . 
R 11 HOH D 6 2106 31 HOH HOH . 
R 11 HOH D 7 2107 41 HOH HOH . 
R 11 HOH D 8 2108 19 HOH HOH . 
R 11 HOH D 9 2109 124 HOH HOH . 
R 11 HOH D 10 2110 87 HOH HOH . 
R 11 HOH D 11 2111 66 HOH HOH . 
R 11 HOH D 12 2112 27 HOH HOH . 
R 11 HOH D 13 2113 37 HOH HOH . 
R 11 HOH D 14 2114 17 HOH HOH . 
R 11 HOH D 15 2115 15 HOH HOH . 
R 11 HOH D 16 2116 54 HOH HOH . 
R 11 HOH D 17 2117 13 HOH HOH . 
R 11 HOH D 18 2118 24 HOH HOH . 
R 11 HOH D 19 2119 73 HOH HOH . 
R 11 HOH D 20 2120 109 HOH HOH . 
R 11 HOH D 21 2121 40 HOH HOH . 
R 11 HOH D 22 2122 39 HOH HOH . 
R 11 HOH D 23 2123 18 HOH HOH . 
R 11 HOH D 24 2124 95 HOH HOH . 
R 11 HOH D 25 2125 21 HOH HOH . 
R 11 HOH D 26 2126 93 HOH HOH . 
R 11 HOH D 27 2127 30 HOH HOH . 
R 11 HOH D 28 2128 22 HOH HOH . 
R 11 HOH D 29 2129 100 HOH HOH . 
R 11 HOH D 30 2130 105 HOH HOH . 
R 11 HOH D 31 2131 84 HOH HOH . 
R 11 HOH D 32 2132 10 HOH HOH . 
R 11 HOH D 33 2133 119 HOH HOH . 
R 11 HOH D 34 2134 33 HOH HOH . 
R 11 HOH D 35 2135 116 HOH HOH . 
R 11 HOH D 36 2136 52 HOH HOH . 
R 11 HOH D 37 2137 120 HOH HOH . 
R 11 HOH D 38 2138 20 HOH HOH . 
R 11 HOH D 39 2139 4 HOH HOH . 
S 11 HOH E 1 101 115 HOH HOH . 
S 11 HOH E 2 102 55 HOH HOH . 
T 11 HOH F 1 501 114 HOH HOH . 
T 11 HOH F 2 502 32 HOH HOH . 
T 11 HOH F 3 503 26 HOH HOH . 
T 11 HOH F 4 504 28 HOH HOH . 
T 11 HOH F 5 505 38 HOH HOH . 
T 11 HOH F 6 506 72 HOH HOH . 
T 11 HOH F 7 507 35 HOH HOH . 
T 11 HOH F 8 508 57 HOH HOH . 
T 11 HOH F 9 509 118 HOH HOH . 
U 11 HOH G 1 101 69 HOH HOH . 
U 11 HOH G 2 102 45 HOH HOH . 
U 11 HOH G 3 103 3 HOH HOH . 
V 11 HOH H 1 101 62 HOH HOH . 
W 11 HOH I 1 101 113 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         M 
_atom_site.label_entity_id       9 
_atom_site.Cartn_x               -1.23 
_atom_site.Cartn_y               0.606 
_atom_site.Cartn_z               87.677 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        52.45 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           2003 
_atom_site.auth_asym_id          D 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    51 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           1 
#