data_6KR2 # _model_server_result.job_id SEXj9PQmzZ8aDw6_ED4Wig _model_server_result.datetime_utc '2025-08-28 11:01:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kr2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2003}' # _entry.id 6KR2 # _exptl.entry_id 6KR2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.8 _cell.angle_gamma 90 _cell.entry_id 6KR2 _cell.length_a 87.219 _cell.length_b 146.418 _cell.length_c 98.388 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KR2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 439 A GLU 438 1_555 D ZN ZN . A ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc2 A NE2 HIS 443 A HIS 442 1_555 D ZN ZN . A ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.846 ? metalc ? metalc3 A SG CYS 448 A CYS 447 1_555 D ZN ZN . A ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.91 ? metalc ? metalc4 A SG CYS 451 A CYS 450 1_555 D ZN ZN . A ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? metalc ? metalc5 A NE2 HIS 713 A HIS 712 1_555 C ZN ZN . A ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.895 ? metalc ? metalc6 A NE2 HIS 715 A HIS 714 1_555 C ZN ZN . A ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc7 A SG CYS 729 A CYS 728 1_555 C ZN ZN . A ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc8 A SG CYS 848 A CYS 847 1_555 C ZN ZN . A ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc9 B NE2 HIS 443 B HIS 442 1_555 F ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.854 ? metalc ? metalc10 B SG CYS 448 B CYS 447 1_555 F ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc11 B SG CYS 451 B CYS 450 1_555 F ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc12 B NE2 HIS 713 B HIS 712 1_555 G ZN ZN . B ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc13 B NE2 HIS 715 B HIS 714 1_555 G ZN ZN . B ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc14 B SG CYS 729 B CYS 728 1_555 G ZN ZN . B ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc15 B SG CYS 848 B CYS 847 1_555 G ZN ZN . B ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 277 n n N HN1 SAH sing 278 n n N HN2 SAH sing 279 n n CA CB SAH sing 280 n n CA C SAH sing 281 n n CA HA SAH sing 282 n n CB CG SAH sing 283 n n CB HB1 SAH sing 284 n n CB HB2 SAH sing 285 n n CG SD SAH sing 286 n n CG HG1 SAH sing 287 n n CG HG2 SAH sing 288 n n SD C5' SAH sing 289 n n C O SAH doub 290 n n C OXT SAH sing 291 n n OXT HXT SAH sing 292 n n C5' C4' SAH sing 293 n n C5' "H5'1" SAH sing 294 n n C5' "H5'2" SAH sing 295 n n C4' O4' SAH sing 296 n n C4' C3' SAH sing 297 n n C4' H4' SAH sing 298 n n O4' C1' SAH sing 299 n n C3' O3' SAH sing 300 n n C3' C2' SAH sing 301 n n C3' H3' SAH sing 302 n n O3' HO3' SAH sing 303 n n C2' O2' SAH sing 304 n n C2' C1' SAH sing 305 n n C2' H2' SAH sing 306 n n O2' HO2' SAH sing 307 n n C1' N9 SAH sing 308 n n C1' H1' SAH sing 309 n n N9 C8 SAH sing 310 n y N9 C4 SAH sing 311 n y C8 N7 SAH doub 312 n y C8 H8 SAH sing 313 n n N7 C5 SAH sing 314 n y C5 C6 SAH sing 315 n y C5 C4 SAH doub 316 n y C6 N6 SAH sing 317 n n C6 N1 SAH doub 318 n y N6 HN61 SAH sing 319 n n N6 HN62 SAH sing 320 n n N1 C2 SAH sing 321 n y C2 N3 SAH doub 322 n y C2 H2 SAH sing 323 n n N3 C4 SAH sing 324 n y # _atom_sites.entry_id 6KR2 _atom_sites.fract_transf_matrix[1][1] 0.011465 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003244 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00683 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010563 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 2001 2001 ZN ZN . D 2 ZN A 1 2002 2004 ZN ZN . E 3 SAH A 1 2003 1001 SAH SAH . F 2 ZN B 1 1001 2002 ZN ZN . G 2 ZN B 1 1002 2003 ZN ZN . H 3 SAH B 1 1003 1011 SAH SAH . I 4 HOH A 1 2101 42 HOH HOH . I 4 HOH A 2 2102 44 HOH HOH . I 4 HOH A 3 2103 43 HOH HOH . I 4 HOH A 4 2104 49 HOH HOH . I 4 HOH A 5 2105 32 HOH HOH . I 4 HOH A 6 2106 41 HOH HOH . I 4 HOH A 7 2107 50 HOH HOH . I 4 HOH A 8 2108 31 HOH HOH . I 4 HOH A 9 2109 39 HOH HOH . I 4 HOH A 10 2110 1 HOH HOH . I 4 HOH A 11 2111 3 HOH HOH . I 4 HOH A 12 2112 37 HOH HOH . I 4 HOH A 13 2113 18 HOH HOH . I 4 HOH A 14 2114 51 HOH HOH . I 4 HOH A 15 2115 4 HOH HOH . I 4 HOH A 16 2116 19 HOH HOH . I 4 HOH A 17 2117 30 HOH HOH . I 4 HOH A 18 2118 40 HOH HOH . J 4 HOH B 1 1101 28 HOH HOH . J 4 HOH B 2 1102 7 HOH HOH . J 4 HOH B 3 1103 14 HOH HOH . J 4 HOH B 4 1104 26 HOH HOH . J 4 HOH B 5 1105 23 HOH HOH . J 4 HOH B 6 1106 34 HOH HOH . J 4 HOH B 7 1107 15 HOH HOH . J 4 HOH B 8 1108 38 HOH HOH . J 4 HOH B 9 1109 27 HOH HOH . J 4 HOH B 10 1110 11 HOH HOH . J 4 HOH B 11 1111 24 HOH HOH . J 4 HOH B 12 1112 46 HOH HOH . J 4 HOH B 13 1113 45 HOH HOH . J 4 HOH B 14 1114 22 HOH HOH . J 4 HOH B 15 1115 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . E 3 129.28 28.893 231.5 0.97 48.56 ? N SAH 2003 A 1 HETATM 2 C CA SAH . . . E 3 128.003 29.368 232.032 0.97 53.18 ? CA SAH 2003 A 1 HETATM 3 C CB SAH . . . E 3 127.929 29.251 233.55 0.97 52.48 ? CB SAH 2003 A 1 HETATM 4 C CG SAH . . . E 3 127.645 27.837 234.023 0.97 52.1 ? CG SAH 2003 A 1 HETATM 5 S SD SAH . . . E 3 128.457 27.37 235.573 0.97 84.04 ? SD SAH 2003 A 1 HETATM 6 C C SAH . . . E 3 127.716 30.791 231.598 0.97 48.87 ? C SAH 2003 A 1 HETATM 7 O O SAH . . . E 3 126.754 31.395 232.042 0.97 42.01 ? O SAH 2003 A 1 HETATM 8 O OXT SAH . . . E 3 128.437 31.366 230.799 0.97 50.77 ? OXT SAH 2003 A 1 HETATM 9 C C5' SAH . . . E 3 129.197 26.01 234.64 0.97 59.18 ? C5' SAH 2003 A 1 HETATM 10 C C4' SAH . . . E 3 128.195 24.955 234.223 0.97 61.17 ? C4' SAH 2003 A 1 HETATM 11 O O4' SAH . . . E 3 128.904 23.805 233.841 0.97 60.67 ? O4' SAH 2003 A 1 HETATM 12 C C3' SAH . . . E 3 127.27 24.531 235.346 0.97 63.86 ? C3' SAH 2003 A 1 HETATM 13 O O3' SAH . . . E 3 125.959 24.903 235.014 0.97 57.86 ? O3' SAH 2003 A 1 HETATM 14 C C2' SAH . . . E 3 127.337 23.027 235.428 0.97 59.38 ? C2' SAH 2003 A 1 HETATM 15 O O2' SAH . . . E 3 126.046 22.527 235.225 0.97 62.25 ? O2' SAH 2003 A 1 HETATM 16 C C1' SAH . . . E 3 128.207 22.652 234.258 0.97 58.59 ? C1' SAH 2003 A 1 HETATM 17 N N9 SAH . . . E 3 129.132 21.572 234.645 0.97 61.85 ? N9 SAH 2003 A 1 HETATM 18 C C8 SAH . . . E 3 129.618 21.281 235.885 0.97 60.08 ? C8 SAH 2003 A 1 HETATM 19 N N7 SAH . . . E 3 130.427 20.194 235.773 0.97 54.7 ? N7 SAH 2003 A 1 HETATM 20 C C5 SAH . . . E 3 130.437 19.822 234.492 0.97 56.57 ? C5 SAH 2003 A 1 HETATM 21 C C6 SAH . . . E 3 131.079 18.8 233.836 0.97 54.41 ? C6 SAH 2003 A 1 HETATM 22 N N6 SAH . . . E 3 131.848 17.99 234.541 0.97 55.73 ? N6 SAH 2003 A 1 HETATM 23 N N1 SAH . . . E 3 130.917 18.63 232.501 0.97 56.93 ? N1 SAH 2003 A 1 HETATM 24 C C2 SAH . . . E 3 130.112 19.494 231.812 0.97 54.27 ? C2 SAH 2003 A 1 HETATM 25 N N3 SAH . . . E 3 129.473 20.513 232.455 0.97 49.12 ? N3 SAH 2003 A 1 HETATM 26 C C4 SAH . . . E 3 129.629 20.672 233.772 0.97 55.7 ? C4 SAH 2003 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 26 #