data_6KR6
#
_model_server_result.job_id            Yh4me6zdjkcSBLjuxbrK6g 
_model_server_result.datetime_utc      '2024-10-24 04:32:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6kr6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":905}' 
#
_entry.id    6KR6 
#
_exptl.entry_id    6KR6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              200.59 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MERCURY (II) ION' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6KR6 
_cell.length_a            62.09 
_cell.length_b            115.64 
_cell.length_c            119.89 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6KR6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B O3' U 4 B U 4 1_555 B P N 5 B N 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.607 ? 
metalc ? metalc1 A NE2 HIS 83 A HIS 116 1_555 L ZN ZN . A ZN 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
metalc ? metalc2 A NE2 HIS 85 A HIS 118 1_555 L ZN ZN . A ZN 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc3 A OE1 GLN 119 A GLN 152 1_555 L ZN ZN . A ZN 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
metalc ? metalc4 A O CYS 155 A CYS 188 1_555 J HG HG . A HG 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.873 ? 
metalc ? metalc5 A SG CYS 155 A CYS 188 1_555 J HG HG . A HG 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? 
metalc ? metalc6 A OE1 GLN 210 A GLN 243 1_555 J HG HG . A HG 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? 
metalc ? metalc7 A NE2 GLN 210 A GLN 243 1_555 J HG HG . A HG 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? 
metalc ? metalc8 A NE2 HIS 211 A HIS 244 1_555 D ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
metalc ? metalc9 A SG CYS 238 A CYS 271 1_555 K HG HG . A HG 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.725 ? 
metalc ? metalc10 A OE2 GLU 381 A GLU 414 1_555 P ZN ZN . A ZN 914 3_654 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc11 A NE2 HIS 413 A HIS 446 1_555 M ZN ZN . A ZN 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
metalc ? metalc12 A OD1 ASP 440 A ASP 473 1_555 O ZN ZN . A ZN 913 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? 
metalc ? metalc13 A OD2 ASP 440 A ASP 473 1_555 O ZN ZN . A ZN 913 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? 
metalc ? metalc14 A OD1 ASP 443 A ASP 476 1_555 O ZN ZN . A ZN 913 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
metalc ? metalc15 A NE2 HIS 455 A HIS 488 1_555 P ZN ZN . A ZN 914 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
metalc ? metalc16 A OE1 GLN 479 A GLN 512 1_555 H HG HG . A HG 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? 
metalc ? metalc17 A SG CYS 498 A CYS 531 1_555 H HG HG . A HG 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? 
metalc ? metalc18 A OG SER 501 A SER 534 1_555 H HG HG . A HG 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.752 ? 
metalc ? metalc19 A OD2 ASP 502 A ASP 535 1_555 L ZN ZN . A ZN 910 3_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
metalc ? metalc20 A OE1 GLN 556 A GLN 589 1_555 C ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
metalc ? metalc21 A OD1 ASP 581 A ASP 614 1_555 N ZN ZN . A ZN 912 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? 
metalc ? metalc22 A OD2 ASP 581 A ASP 614 1_555 N ZN ZN . A ZN 912 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
metalc ? metalc23 A SG CYS 615 A CYS 648 1_555 I HG HG . A HG 907 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.771 ? 
metalc ? metalc24 A SG CYS 615 A CYS 648 1_555 I HG HG . A HG 907 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.738 ? 
metalc ? metalc25 A OD2 ASP 652 A ASP 685 1_555 G HG HG . A HG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? 
metalc ? metalc26 A OD1 ASP 652 A ASP 685 1_555 N ZN ZN . A ZN 912 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? 
metalc ? metalc27 A O CYS 781 A CYS 814 1_555 G HG HG . A HG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.149 ? 
metalc ? metalc28 A SG CYS 781 A CYS 814 1_555 G HG HG . A HG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? 
metalc ? metalc29 A ND1 HIS 796 A HIS 829 1_555 E ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
metalc ? metalc30 A O LEU 810 A LEU 843 1_555 C ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? 
metalc ? metalc31 A OXT LEU 810 A LEU 843 1_555 C ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? 
metalc ? metalc32 C ZN ZN . A ZN 901 1_555 B OP3 U 1 B U 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? 
metalc ? metalc33 C ZN ZN . A ZN 901 1_555 B OP2 U 1 B U 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? 
metalc ? metalc34 C ZN ZN . A ZN 901 1_555 B OP1 U 3 B U 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? 
#
_chem_comp.formula           'Hg 2' 
_chem_comp.formula_weight    200.59 
_chem_comp.id                HG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MERCURY (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6KR6 
_atom_sites.fract_transf_matrix[1][1]    0.016106 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008648 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008341 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ZN A 1 901 1 ZN ZN . 
D 3 ZN A 1 902 2 ZN ZN . 
E 3 ZN A 1 903 3 ZN ZN . 
F 4 HG A 1 904 7 HG HG . 
G 4 HG A 1 905 1 HG HG . 
H 4 HG A 1 906 2 HG HG . 
I 4 HG A 1 907 3 HG HG . 
J 4 HG A 1 908 4 HG HG . 
K 4 HG A 1 909 5 HG HG . 
L 3 ZN A 1 910 1 ZN ZN . 
M 3 ZN A 1 911 2 ZN ZN . 
N 3 ZN A 1 912 3 ZN ZN . 
O 3 ZN A 1 913 4 ZN ZN . 
P 3 ZN A 1 914 7 ZN ZN . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           HG 
_atom_site.label_atom_id         HG 
_atom_site.label_comp_id         HG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         G 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               5.948 
_atom_site.Cartn_y               -21.546 
_atom_site.Cartn_z               -26.175 
_atom_site.occupancy             0.72 
_atom_site.B_iso_or_equiv        71.72 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          HG 
_atom_site.auth_comp_id          HG 
_atom_site.auth_seq_id           905 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           1 
#