data_6KRG # _model_server_result.job_id UxmntRORkulM16Pk5KIExQ _model_server_result.datetime_utc '2024-11-22 05:24:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6krg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 6KRG # _exptl.entry_id 6KRG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6KRG _cell.length_a 68.565 _cell.length_b 68.565 _cell.length_c 119.26 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KRG _symmetry.cell_setting ? _symmetry.Int_Tables_number 80 _symmetry.space_group_name_Hall 'I 4bw' _symmetry.space_group_name_H-M 'I 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 64 A LEU 64 1_555 A N1 CRO 65 A CRO 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? covale ? covale2 A C3 CRO 65 A CRO 66 1_555 A N VAL 66 A VAL 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? covale ? covale3 A C HIS 179 A HIS 181 1_555 A N TSQ 180 A TSQ 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? covale ? covale4 A C TSQ 180 A TSQ 182 1_555 A N GLN 181 A GLN 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? metalc ? metalc1 G NA NA . A NA 306 1_555 H O HOH . A HOH 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc2 G NA NA . A NA 306 1_555 H O HOH . A HOH 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.838 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 170 n n C1 C2 GOL sing 171 n n C1 H11 GOL sing 172 n n C1 H12 GOL sing 173 n n O1 HO1 GOL sing 174 n n C2 O2 GOL sing 175 n n C2 C3 GOL sing 176 n n C2 H2 GOL sing 177 n n O2 HO2 GOL sing 178 n n C3 O3 GOL sing 179 n n C3 H31 GOL sing 180 n n C3 H32 GOL sing 181 n n O3 HO3 GOL sing 182 n n # _atom_sites.entry_id 6KRG _atom_sites.fract_transf_matrix[1][1] 0.014585 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014585 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008385 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 301 1 GOL GOL . C 2 GOL A 1 302 2 GOL GOL . D 3 CL A 1 303 5 CL CL . E 3 CL A 1 304 6 CL CL . F 3 CL A 1 305 8 CL CL . G 4 NA A 1 306 9 NA NA . H 5 HOH A 1 401 159 HOH HOH . H 5 HOH A 2 402 168 HOH HOH . H 5 HOH A 3 403 151 HOH HOH . H 5 HOH A 4 404 195 HOH HOH . H 5 HOH A 5 405 148 HOH HOH . H 5 HOH A 6 406 68 HOH HOH . H 5 HOH A 7 407 54 HOH HOH . H 5 HOH A 8 408 81 HOH HOH . H 5 HOH A 9 409 173 HOH HOH . H 5 HOH A 10 410 227 HOH HOH . H 5 HOH A 11 411 125 HOH HOH . H 5 HOH A 12 412 178 HOH HOH . H 5 HOH A 13 413 92 HOH HOH . H 5 HOH A 14 414 21 HOH HOH . H 5 HOH A 15 415 11 HOH HOH . H 5 HOH A 16 416 228 HOH HOH . H 5 HOH A 17 417 197 HOH HOH . H 5 HOH A 18 418 215 HOH HOH . H 5 HOH A 19 419 256 HOH HOH . H 5 HOH A 20 420 131 HOH HOH . H 5 HOH A 21 421 66 HOH HOH . H 5 HOH A 22 422 36 HOH HOH . H 5 HOH A 23 423 261 HOH HOH . H 5 HOH A 24 424 76 HOH HOH . H 5 HOH A 25 425 99 HOH HOH . H 5 HOH A 26 426 156 HOH HOH . H 5 HOH A 27 427 174 HOH HOH . H 5 HOH A 28 428 200 HOH HOH . H 5 HOH A 29 429 268 HOH HOH . H 5 HOH A 30 430 251 HOH HOH . H 5 HOH A 31 431 56 HOH HOH . H 5 HOH A 32 432 176 HOH HOH . H 5 HOH A 33 433 259 HOH HOH . H 5 HOH A 34 434 13 HOH HOH . H 5 HOH A 35 435 33 HOH HOH . H 5 HOH A 36 436 23 HOH HOH . H 5 HOH A 37 437 79 HOH HOH . H 5 HOH A 38 438 214 HOH HOH . H 5 HOH A 39 439 189 HOH HOH . H 5 HOH A 40 440 31 HOH HOH . H 5 HOH A 41 441 12 HOH HOH . H 5 HOH A 42 442 10 HOH HOH . H 5 HOH A 43 443 275 HOH HOH . H 5 HOH A 44 444 46 HOH HOH . H 5 HOH A 45 445 104 HOH HOH . H 5 HOH A 46 446 120 HOH HOH . H 5 HOH A 47 447 50 HOH HOH . H 5 HOH A 48 448 158 HOH HOH . H 5 HOH A 49 449 231 HOH HOH . H 5 HOH A 50 450 1 HOH HOH . H 5 HOH A 51 451 124 HOH HOH . H 5 HOH A 52 452 60 HOH HOH . H 5 HOH A 53 453 130 HOH HOH . H 5 HOH A 54 454 240 HOH HOH . H 5 HOH A 55 455 30 HOH HOH . H 5 HOH A 56 456 190 HOH HOH . H 5 HOH A 57 457 28 HOH HOH . H 5 HOH A 58 458 14 HOH HOH . H 5 HOH A 59 459 67 HOH HOH . H 5 HOH A 60 460 184 HOH HOH . H 5 HOH A 61 461 208 HOH HOH . H 5 HOH A 62 462 269 HOH HOH . H 5 HOH A 63 463 114 HOH HOH . H 5 HOH A 64 464 272 HOH HOH . H 5 HOH A 65 465 193 HOH HOH . H 5 HOH A 66 466 264 HOH HOH . H 5 HOH A 67 467 58 HOH HOH . H 5 HOH A 68 468 61 HOH HOH . H 5 HOH A 69 469 121 HOH HOH . H 5 HOH A 70 470 107 HOH HOH . H 5 HOH A 71 471 171 HOH HOH . H 5 HOH A 72 472 2 HOH HOH . H 5 HOH A 73 473 62 HOH HOH . H 5 HOH A 74 474 44 HOH HOH . H 5 HOH A 75 475 7 HOH HOH . H 5 HOH A 76 476 48 HOH HOH . H 5 HOH A 77 477 27 HOH HOH . H 5 HOH A 78 478 105 HOH HOH . H 5 HOH A 79 479 172 HOH HOH . H 5 HOH A 80 480 226 HOH HOH . H 5 HOH A 81 481 32 HOH HOH . H 5 HOH A 82 482 22 HOH HOH . H 5 HOH A 83 483 51 HOH HOH . H 5 HOH A 84 484 39 HOH HOH . H 5 HOH A 85 485 20 HOH HOH . H 5 HOH A 86 486 135 HOH HOH . H 5 HOH A 87 487 8 HOH HOH . H 5 HOH A 88 488 155 HOH HOH . H 5 HOH A 89 489 16 HOH HOH . H 5 HOH A 90 490 100 HOH HOH . H 5 HOH A 91 491 41 HOH HOH . H 5 HOH A 92 492 123 HOH HOH . H 5 HOH A 93 493 73 HOH HOH . H 5 HOH A 94 494 163 HOH HOH . H 5 HOH A 95 495 80 HOH HOH . H 5 HOH A 96 496 144 HOH HOH . H 5 HOH A 97 497 119 HOH HOH . H 5 HOH A 98 498 91 HOH HOH . H 5 HOH A 99 499 262 HOH HOH . H 5 HOH A 100 500 77 HOH HOH . H 5 HOH A 101 501 95 HOH HOH . H 5 HOH A 102 502 141 HOH HOH . H 5 HOH A 103 503 90 HOH HOH . H 5 HOH A 104 504 71 HOH HOH . H 5 HOH A 105 505 85 HOH HOH . H 5 HOH A 106 506 52 HOH HOH . H 5 HOH A 107 507 29 HOH HOH . H 5 HOH A 108 508 198 HOH HOH . H 5 HOH A 109 509 40 HOH HOH . H 5 HOH A 110 510 26 HOH HOH . H 5 HOH A 111 511 69 HOH HOH . H 5 HOH A 112 512 246 HOH HOH . H 5 HOH A 113 513 103 HOH HOH . H 5 HOH A 114 514 218 HOH HOH . H 5 HOH A 115 515 169 HOH HOH . H 5 HOH A 116 516 24 HOH HOH . H 5 HOH A 117 517 180 HOH HOH . H 5 HOH A 118 518 37 HOH HOH . H 5 HOH A 119 519 35 HOH HOH . H 5 HOH A 120 520 187 HOH HOH . H 5 HOH A 121 521 209 HOH HOH . H 5 HOH A 122 522 229 HOH HOH . H 5 HOH A 123 523 271 HOH HOH . H 5 HOH A 124 524 194 HOH HOH . H 5 HOH A 125 525 274 HOH HOH . H 5 HOH A 126 526 115 HOH HOH . H 5 HOH A 127 527 181 HOH HOH . H 5 HOH A 128 528 43 HOH HOH . H 5 HOH A 129 529 126 HOH HOH . H 5 HOH A 130 530 101 HOH HOH . H 5 HOH A 131 531 196 HOH HOH . H 5 HOH A 132 532 239 HOH HOH . H 5 HOH A 133 533 4 HOH HOH . H 5 HOH A 134 534 202 HOH HOH . H 5 HOH A 135 535 53 HOH HOH . H 5 HOH A 136 536 6 HOH HOH . H 5 HOH A 137 537 98 HOH HOH . H 5 HOH A 138 538 59 HOH HOH . H 5 HOH A 139 539 211 HOH HOH . H 5 HOH A 140 540 65 HOH HOH . H 5 HOH A 141 541 64 HOH HOH . H 5 HOH A 142 542 70 HOH HOH . H 5 HOH A 143 543 18 HOH HOH . H 5 HOH A 144 544 252 HOH HOH . H 5 HOH A 145 545 267 HOH HOH . H 5 HOH A 146 546 116 HOH HOH . H 5 HOH A 147 547 74 HOH HOH . H 5 HOH A 148 548 87 HOH HOH . H 5 HOH A 149 549 42 HOH HOH . H 5 HOH A 150 550 82 HOH HOH . H 5 HOH A 151 551 161 HOH HOH . H 5 HOH A 152 552 9 HOH HOH . H 5 HOH A 153 553 258 HOH HOH . H 5 HOH A 154 554 170 HOH HOH . H 5 HOH A 155 555 57 HOH HOH . H 5 HOH A 156 556 75 HOH HOH . H 5 HOH A 157 557 38 HOH HOH . H 5 HOH A 158 558 220 HOH HOH . H 5 HOH A 159 559 160 HOH HOH . H 5 HOH A 160 560 93 HOH HOH . H 5 HOH A 161 561 277 HOH HOH . H 5 HOH A 162 562 188 HOH HOH . H 5 HOH A 163 563 204 HOH HOH . H 5 HOH A 164 564 147 HOH HOH . H 5 HOH A 165 565 96 HOH HOH . H 5 HOH A 166 566 260 HOH HOH . H 5 HOH A 167 567 242 HOH HOH . H 5 HOH A 168 568 55 HOH HOH . H 5 HOH A 169 569 106 HOH HOH . H 5 HOH A 170 570 210 HOH HOH . H 5 HOH A 171 571 257 HOH HOH . H 5 HOH A 172 572 45 HOH HOH . H 5 HOH A 173 573 88 HOH HOH . H 5 HOH A 174 574 3 HOH HOH . H 5 HOH A 175 575 206 HOH HOH . H 5 HOH A 176 576 63 HOH HOH . H 5 HOH A 177 577 133 HOH HOH . H 5 HOH A 178 578 186 HOH HOH . H 5 HOH A 179 579 222 HOH HOH . H 5 HOH A 180 580 49 HOH HOH . H 5 HOH A 181 581 266 HOH HOH . H 5 HOH A 182 582 128 HOH HOH . H 5 HOH A 183 583 25 HOH HOH . H 5 HOH A 184 584 34 HOH HOH . H 5 HOH A 185 585 146 HOH HOH . H 5 HOH A 186 586 201 HOH HOH . H 5 HOH A 187 587 112 HOH HOH . H 5 HOH A 188 588 97 HOH HOH . H 5 HOH A 189 589 19 HOH HOH . H 5 HOH A 190 590 47 HOH HOH . H 5 HOH A 191 591 15 HOH HOH . H 5 HOH A 192 592 165 HOH HOH . H 5 HOH A 193 593 167 HOH HOH . H 5 HOH A 194 594 152 HOH HOH . H 5 HOH A 195 595 183 HOH HOH . H 5 HOH A 196 596 205 HOH HOH . H 5 HOH A 197 597 248 HOH HOH . H 5 HOH A 198 598 5 HOH HOH . H 5 HOH A 199 599 17 HOH HOH . H 5 HOH A 200 600 273 HOH HOH . H 5 HOH A 201 601 153 HOH HOH . H 5 HOH A 202 602 203 HOH HOH . H 5 HOH A 203 603 72 HOH HOH . H 5 HOH A 204 604 221 HOH HOH . H 5 HOH A 205 605 109 HOH HOH . H 5 HOH A 206 606 177 HOH HOH . H 5 HOH A 207 607 113 HOH HOH . H 5 HOH A 208 608 118 HOH HOH . H 5 HOH A 209 609 157 HOH HOH . H 5 HOH A 210 610 249 HOH HOH . H 5 HOH A 211 611 140 HOH HOH . H 5 HOH A 212 612 234 HOH HOH . H 5 HOH A 213 613 179 HOH HOH . H 5 HOH A 214 614 78 HOH HOH . H 5 HOH A 215 615 219 HOH HOH . H 5 HOH A 216 616 217 HOH HOH . H 5 HOH A 217 617 145 HOH HOH . H 5 HOH A 218 618 230 HOH HOH . H 5 HOH A 219 619 149 HOH HOH . H 5 HOH A 220 620 139 HOH HOH . H 5 HOH A 221 621 143 HOH HOH . H 5 HOH A 222 622 241 HOH HOH . H 5 HOH A 223 623 117 HOH HOH . H 5 HOH A 224 624 224 HOH HOH . H 5 HOH A 225 625 94 HOH HOH . H 5 HOH A 226 626 245 HOH HOH . H 5 HOH A 227 627 132 HOH HOH . H 5 HOH A 228 628 108 HOH HOH . H 5 HOH A 229 629 270 HOH HOH . H 5 HOH A 230 630 164 HOH HOH . H 5 HOH A 231 631 199 HOH HOH . H 5 HOH A 232 632 247 HOH HOH . H 5 HOH A 233 633 89 HOH HOH . H 5 HOH A 234 634 192 HOH HOH . H 5 HOH A 235 635 136 HOH HOH . H 5 HOH A 236 636 216 HOH HOH . H 5 HOH A 237 637 223 HOH HOH . H 5 HOH A 238 638 134 HOH HOH . H 5 HOH A 239 639 213 HOH HOH . H 5 HOH A 240 640 207 HOH HOH . H 5 HOH A 241 641 122 HOH HOH . H 5 HOH A 242 642 84 HOH HOH . H 5 HOH A 243 643 142 HOH HOH . H 5 HOH A 244 644 236 HOH HOH . H 5 HOH A 245 645 138 HOH HOH . H 5 HOH A 246 646 129 HOH HOH . H 5 HOH A 247 647 225 HOH HOH . H 5 HOH A 248 648 233 HOH HOH . H 5 HOH A 249 649 83 HOH HOH . H 5 HOH A 250 650 185 HOH HOH . H 5 HOH A 251 651 86 HOH HOH . H 5 HOH A 252 652 127 HOH HOH . H 5 HOH A 253 653 166 HOH HOH . H 5 HOH A 254 654 175 HOH HOH . H 5 HOH A 255 655 243 HOH HOH . H 5 HOH A 256 656 102 HOH HOH . H 5 HOH A 257 657 154 HOH HOH . H 5 HOH A 258 658 137 HOH HOH . H 5 HOH A 259 659 162 HOH HOH . H 5 HOH A 260 660 212 HOH HOH . H 5 HOH A 261 661 276 HOH HOH . H 5 HOH A 262 662 191 HOH HOH . H 5 HOH A 263 663 110 HOH HOH . H 5 HOH A 264 664 111 HOH HOH . H 5 HOH A 265 665 150 HOH HOH . H 5 HOH A 266 666 182 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 28.445 10.846 26.016 1 28.93 ? C1 GOL 302 A 1 HETATM 2 O O1 GOL . . . C 2 28.872 12.145 26.315 1 38.7 ? O1 GOL 302 A 1 HETATM 3 C C2 GOL . . . C 2 28.571 10.69 24.493 1 30.7 ? C2 GOL 302 A 1 HETATM 4 O O2 GOL . . . C 2 27.767 11.59 23.803 1 33.38 ? O2 GOL 302 A 1 HETATM 5 C C3 GOL . . . C 2 28.267 9.181 24.18 1 29.41 ? C3 GOL 302 A 1 HETATM 6 O O3 GOL . . . C 2 28.687 8.88 22.847 1 22.19 ? O3 GOL 302 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 34 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #