data_6KRH
#
_model_server_result.job_id            g9AKfv3XH824DAkprT-1Vg 
_model_server_result.datetime_utc      '2024-11-16 01:25:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6krh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    6KRH 
#
_exptl.entry_id    6KRH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6KRH 
_cell.length_a            95.549 
_cell.length_b            95.549 
_cell.length_c            200.589 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6KRH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                AMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P AMP doub 13 n n 
P O2P AMP sing 14 n n 
P O3P AMP sing 15 n n 
P O5' AMP sing 16 n n 
O2P HOP2 AMP sing 17 n n 
O3P HOP3 AMP sing 18 n n 
O5' C5' AMP sing 19 n n 
C5' C4' AMP sing 20 n n 
C5' "H5'1" AMP sing 21 n n 
C5' "H5'2" AMP sing 22 n n 
C4' O4' AMP sing 23 n n 
C4' C3' AMP sing 24 n n 
C4' H4' AMP sing 25 n n 
O4' C1' AMP sing 26 n n 
C3' O3' AMP sing 27 n n 
C3' C2' AMP sing 28 n n 
C3' H3' AMP sing 29 n n 
O3' HO3' AMP sing 30 n n 
C2' O2' AMP sing 31 n n 
C2' C1' AMP sing 32 n n 
C2' H2' AMP sing 33 n n 
O2' HO2' AMP sing 34 n n 
C1' N9 AMP sing 35 n n 
C1' H1' AMP sing 36 n n 
N9 C8 AMP sing 37 n y 
N9 C4 AMP sing 38 n y 
C8 N7 AMP doub 39 n y 
C8 H8 AMP sing 40 n n 
N7 C5 AMP sing 41 n y 
C5 C6 AMP sing 42 n y 
C5 C4 AMP doub 43 n y 
C6 N6 AMP sing 44 n n 
C6 N1 AMP doub 45 n y 
N6 HN61 AMP sing 46 n n 
N6 HN62 AMP sing 47 n n 
N1 C2 AMP sing 48 n y 
C2 N3 AMP doub 49 n y 
C2 H2 AMP sing 50 n n 
N3 C4 AMP sing 51 n y 
#
_atom_sites.entry_id                     6KRH 
_atom_sites.fract_transf_matrix[1][1]    0.010466 
_atom_sites.fract_transf_matrix[1][2]    0.006042 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012085 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004985 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 AMP A 1 401 401 AMP AMP . 
C 3 NMN A 1 402 402 NMN NMN . 
D 4 SO4 A 1 403 403 SO4 SO4 . 
E 4 SO4 A 1 404 404 SO4 SO4 . 
F 4 SO4 A 1 405 405 SO4 SO4 . 
G 4 SO4 A 1 406 406 SO4 SO4 . 
H 5 HOH A 1 501 501 HOH HOH . 
H 5 HOH A 2 502 502 HOH HOH . 
H 5 HOH A 3 503 503 HOH HOH . 
H 5 HOH A 4 504 504 HOH HOH . 
H 5 HOH A 5 505 505 HOH HOH . 
H 5 HOH A 6 506 506 HOH HOH . 
H 5 HOH A 7 507 507 HOH HOH . 
H 5 HOH A 8 508 508 HOH HOH . 
H 5 HOH A 9 509 509 HOH HOH . 
H 5 HOH A 10 510 510 HOH HOH . 
H 5 HOH A 11 511 511 HOH HOH . 
H 5 HOH A 12 512 512 HOH HOH . 
H 5 HOH A 13 513 513 HOH HOH . 
H 5 HOH A 14 514 514 HOH HOH . 
H 5 HOH A 15 515 516 HOH HOH . 
H 5 HOH A 16 516 517 HOH HOH . 
H 5 HOH A 17 517 518 HOH HOH . 
H 5 HOH A 18 518 519 HOH HOH . 
H 5 HOH A 19 519 520 HOH HOH . 
H 5 HOH A 20 520 521 HOH HOH . 
H 5 HOH A 21 521 522 HOH HOH . 
H 5 HOH A 22 522 523 HOH HOH . 
H 5 HOH A 23 523 524 HOH HOH . 
H 5 HOH A 24 524 525 HOH HOH . 
H 5 HOH A 25 525 526 HOH HOH . 
H 5 HOH A 26 526 527 HOH HOH . 
H 5 HOH A 27 527 528 HOH HOH . 
H 5 HOH A 28 528 529 HOH HOH . 
H 5 HOH A 29 529 530 HOH HOH . 
H 5 HOH A 30 530 531 HOH HOH . 
H 5 HOH A 31 531 532 HOH HOH . 
H 5 HOH A 32 532 515 HOH HOH . 
H 5 HOH A 33 533 533 HOH HOH . 
H 5 HOH A 34 534 534 HOH HOH . 
H 5 HOH A 35 535 535 HOH HOH . 
H 5 HOH A 36 536 536 HOH HOH . 
H 5 HOH A 37 537 537 HOH HOH . 
H 5 HOH A 38 538 538 HOH HOH . 
H 5 HOH A 39 539 539 HOH HOH . 
H 5 HOH A 40 540 540 HOH HOH . 
H 5 HOH A 41 541 541 HOH HOH . 
H 5 HOH A 42 542 542 HOH HOH . 
H 5 HOH A 43 543 543 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P AMP . . . B 2 -14.537 43.331 67.054 1 85.69 ? P AMP 401 A 1 
HETATM 2 O O1P AMP . . . B 2 -14.424 42.051 66.336 1 75.96 ? O1P AMP 401 A 1 
HETATM 3 O O2P AMP . . . B 2 -15.153 44.48 66.486 1 75.74 ? O2P AMP 401 A 1 
HETATM 4 O O3P AMP . . . B 2 -15.194 43.127 68.312 1 96.45 ? O3P AMP 401 A 1 
HETATM 5 O O5' AMP . . . B 2 -13.095 43.796 67.319 1 69.26 ? O5' AMP 401 A 1 
HETATM 6 C C5' AMP . . . B 2 -12.671 43.812 68.615 1 68.37 ? C5' AMP 401 A 1 
HETATM 7 C C4' AMP . . . B 2 -11.221 43.489 68.746 1 68.15 ? C4' AMP 401 A 1 
HETATM 8 O O4' AMP . . . B 2 -10.608 42.834 67.675 1 62.36 ? O4' AMP 401 A 1 
HETATM 9 C C3' AMP . . . B 2 -10.403 44.692 68.751 1 64.91 ? C3' AMP 401 A 1 
HETATM 10 O O3' AMP . . . B 2 -10.646 45.509 69.812 1 59.56 ? O3' AMP 401 A 1 
HETATM 11 C C2' AMP . . . B 2 -9.06 44.108 68.785 1 60.88 ? C2' AMP 401 A 1 
HETATM 12 O O2' AMP . . . B 2 -8.772 43.687 70.055 1 70.62 ? O2' AMP 401 A 1 
HETATM 13 C C1' AMP . . . B 2 -9.243 42.919 67.934 1 55.88 ? C1' AMP 401 A 1 
HETATM 14 N N9 AMP . . . B 2 -8.539 43.046 66.71 1 46.66 ? N9 AMP 401 A 1 
HETATM 15 C C8 AMP . . . B 2 -8.395 42.02 65.98 1 46.95 ? C8 AMP 401 A 1 
HETATM 16 N N7 AMP . . . B 2 -7.737 42.298 64.906 1 45.39 ? N7 AMP 401 A 1 
HETATM 17 C C5 AMP . . . B 2 -7.449 43.549 64.952 1 50.91 ? C5 AMP 401 A 1 
HETATM 18 C C6 AMP . . . B 2 -6.703 44.467 64.135 1 47.7 ? C6 AMP 401 A 1 
HETATM 19 N N6 AMP . . . B 2 -6.167 44.111 63.002 1 35.7 ? N6 AMP 401 A 1 
HETATM 20 N N1 AMP . . . B 2 -6.623 45.678 64.579 1 45.3 ? N1 AMP 401 A 1 
HETATM 21 C C2 AMP . . . B 2 -7.16 46.054 65.691 1 46.01 ? C2 AMP 401 A 1 
HETATM 22 N N3 AMP . . . B 2 -7.786 45.272 66.46 1 42.02 ? N3 AMP 401 A 1 
HETATM 23 C C4 AMP . . . B 2 -7.982 44.044 66.159 1 44.94 ? C4 AMP 401 A 1 
HETATM 24 H "H5'1" AMP . . . B 2 -12.857 44.801 69.04 1 82.07 ? "H5'1" AMP 401 A 1 
HETATM 25 H "H5'2" AMP . . . B 2 -13.253 43.091 69.193 1 82.07 ? "H5'2" AMP 401 A 1 
HETATM 26 H H4' AMP . . . B 2 -11.054 42.935 69.681 1 81.81 ? H4' AMP 401 A 1 
HETATM 27 H H3' AMP . . . B 2 -10.542 45.232 67.804 1 77.92 ? H3' AMP 401 A 1 
HETATM 28 H HO3' AMP . . . B 2 -10.002 45.331 70.511 1 71.5 ? HO3' AMP 401 A 1 
HETATM 29 H H2' AMP . . . B 2 -8.31 44.825 68.43 1 73.08 ? H2' AMP 401 A 1 
HETATM 30 H HO2' AMP . . . B 2 -7.86 43.366 70.088 1 84.77 ? HO2' AMP 401 A 1 
HETATM 31 H H1' AMP . . . B 2 -8.903 42.028 68.481 1 67.09 ? H1' AMP 401 A 1 
HETATM 32 H H8 AMP . . . B 2 -8.802 41.043 66.212 1 56.37 ? H8 AMP 401 A 1 
HETATM 33 H HN61 AMP . . . B 2 -6.253 43.158 62.68 1 42.87 ? HN61 AMP 401 A 1 
HETATM 34 H HN62 AMP . . . B 2 -5.676 44.791 62.44 1 42.87 ? HN62 AMP 401 A 1 
HETATM 35 H H2 AMP . . . B 2 -7.043 47.087 65.995 1 55.24 ? H2 AMP 401 A 1 
#
_model_server_stats.io_time_ms              57 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           35 
#