data_6KRO
#
_model_server_result.job_id            CmpihN5_bIqckHBGDN3zjw 
_model_server_result.datetime_utc      '2025-01-12 04:01:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6kro 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1204}' 
#
_entry.id    6KRO 
#
_exptl.entry_id    6KRO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6KRO 
_cell.length_a            66.116 
_cell.length_b            66.116 
_cell.length_c            114.758 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6KRO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    'P 4abw 2nw' 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 F N N 
? 6 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 135 A CYS 1081 1_555 D ZN ZN . A ZN 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? 
metalc ? metalc2 A ND1 HIS 138 A HIS 1084 1_555 D ZN ZN . A ZN 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? 
metalc ? metalc3 A SG CYS 143 A CYS 1089 1_555 D ZN ZN . A ZN 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? 
metalc ? metalc4 A SG CYS 146 A CYS 1092 1_555 D ZN ZN . A ZN 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 206 n n 
C1 C2 GOL sing 207 n n 
C1 H11 GOL sing 208 n n 
C1 H12 GOL sing 209 n n 
O1 HO1 GOL sing 210 n n 
C2 O2 GOL sing 211 n n 
C2 C3 GOL sing 212 n n 
C2 H2 GOL sing 213 n n 
O2 HO2 GOL sing 214 n n 
C3 O3 GOL sing 215 n n 
C3 H31 GOL sing 216 n n 
C3 H32 GOL sing 217 n n 
O3 HO3 GOL sing 218 n n 
#
_atom_sites.entry_id                     6KRO 
_atom_sites.fract_transf_matrix[1][1]    0.015125 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015125 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008714 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 DU9 A 1 1201 1163 DU9 XXX . 
D 4 ZN A 1 1202 1201 ZN ZN . 
E 5 PO4 A 1 1203 1203 PO4 PO4 . 
F 6 GOL A 1 1204 1204 GOL GOL . 
G 6 GOL A 1 1205 1205 GOL GOL . 
H 7 HOH A 1 1301 85 HOH HOH . 
H 7 HOH A 2 1302 77 HOH HOH . 
H 7 HOH A 3 1303 36 HOH HOH . 
H 7 HOH A 4 1304 50 HOH HOH . 
H 7 HOH A 5 1305 111 HOH HOH . 
H 7 HOH A 6 1306 5 HOH HOH . 
H 7 HOH A 7 1307 54 HOH HOH . 
H 7 HOH A 8 1308 20 HOH HOH . 
H 7 HOH A 9 1309 79 HOH HOH . 
H 7 HOH A 10 1310 6 HOH HOH . 
H 7 HOH A 11 1311 108 HOH HOH . 
H 7 HOH A 12 1312 22 HOH HOH . 
H 7 HOH A 13 1313 102 HOH HOH . 
H 7 HOH A 14 1314 66 HOH HOH . 
H 7 HOH A 15 1315 51 HOH HOH . 
H 7 HOH A 16 1316 18 HOH HOH . 
H 7 HOH A 17 1317 34 HOH HOH . 
H 7 HOH A 18 1318 48 HOH HOH . 
H 7 HOH A 19 1319 32 HOH HOH . 
H 7 HOH A 20 1320 41 HOH HOH . 
H 7 HOH A 21 1321 25 HOH HOH . 
H 7 HOH A 22 1322 2 HOH HOH . 
H 7 HOH A 23 1323 101 HOH HOH . 
H 7 HOH A 24 1324 33 HOH HOH . 
H 7 HOH A 25 1325 14 HOH HOH . 
H 7 HOH A 26 1326 100 HOH HOH . 
H 7 HOH A 27 1327 15 HOH HOH . 
H 7 HOH A 28 1328 64 HOH HOH . 
H 7 HOH A 29 1329 30 HOH HOH . 
H 7 HOH A 30 1330 29 HOH HOH . 
H 7 HOH A 31 1331 39 HOH HOH . 
H 7 HOH A 32 1332 84 HOH HOH . 
H 7 HOH A 33 1333 104 HOH HOH . 
H 7 HOH A 34 1334 8 HOH HOH . 
H 7 HOH A 35 1335 26 HOH HOH . 
H 7 HOH A 36 1336 7 HOH HOH . 
H 7 HOH A 37 1337 59 HOH HOH . 
H 7 HOH A 38 1338 27 HOH HOH . 
H 7 HOH A 39 1339 9 HOH HOH . 
H 7 HOH A 40 1340 116 HOH HOH . 
H 7 HOH A 41 1341 65 HOH HOH . 
H 7 HOH A 42 1342 109 HOH HOH . 
H 7 HOH A 43 1343 40 HOH HOH . 
H 7 HOH A 44 1344 42 HOH HOH . 
H 7 HOH A 45 1345 43 HOH HOH . 
H 7 HOH A 46 1346 47 HOH HOH . 
H 7 HOH A 47 1347 13 HOH HOH . 
H 7 HOH A 48 1348 11 HOH HOH . 
H 7 HOH A 49 1349 49 HOH HOH . 
H 7 HOH A 50 1350 63 HOH HOH . 
H 7 HOH A 51 1351 46 HOH HOH . 
H 7 HOH A 52 1352 82 HOH HOH . 
H 7 HOH A 53 1353 95 HOH HOH . 
H 7 HOH A 54 1354 37 HOH HOH . 
H 7 HOH A 55 1355 105 HOH HOH . 
H 7 HOH A 56 1356 83 HOH HOH . 
H 7 HOH A 57 1357 61 HOH HOH . 
H 7 HOH A 58 1358 106 HOH HOH . 
H 7 HOH A 59 1359 76 HOH HOH . 
H 7 HOH A 60 1360 44 HOH HOH . 
H 7 HOH A 61 1361 4 HOH HOH . 
H 7 HOH A 62 1362 35 HOH HOH . 
H 7 HOH A 63 1363 75 HOH HOH . 
H 7 HOH A 64 1364 103 HOH HOH . 
H 7 HOH A 65 1365 74 HOH HOH . 
H 7 HOH A 66 1366 107 HOH HOH . 
H 7 HOH A 67 1367 12 HOH HOH . 
H 7 HOH A 68 1368 55 HOH HOH . 
H 7 HOH A 69 1369 98 HOH HOH . 
H 7 HOH A 70 1370 68 HOH HOH . 
H 7 HOH A 71 1371 28 HOH HOH . 
H 7 HOH A 72 1372 70 HOH HOH . 
H 7 HOH A 73 1373 72 HOH HOH . 
H 7 HOH A 74 1374 52 HOH HOH . 
H 7 HOH A 75 1375 71 HOH HOH . 
H 7 HOH A 76 1376 58 HOH HOH . 
H 7 HOH A 77 1377 94 HOH HOH . 
H 7 HOH A 78 1378 31 HOH HOH . 
H 7 HOH A 79 1379 92 HOH HOH . 
H 7 HOH A 80 1380 67 HOH HOH . 
H 7 HOH A 81 1381 60 HOH HOH . 
H 7 HOH A 82 1382 113 HOH HOH . 
H 7 HOH A 83 1383 17 HOH HOH . 
H 7 HOH A 84 1384 89 HOH HOH . 
H 7 HOH A 85 1385 53 HOH HOH . 
H 7 HOH A 86 1386 78 HOH HOH . 
H 7 HOH A 87 1387 118 HOH HOH . 
H 7 HOH A 88 1388 73 HOH HOH . 
H 7 HOH A 89 1389 115 HOH HOH . 
H 7 HOH A 90 1390 91 HOH HOH . 
H 7 HOH A 91 1391 99 HOH HOH . 
H 7 HOH A 92 1392 62 HOH HOH . 
H 7 HOH A 93 1393 114 HOH HOH . 
H 7 HOH A 94 1394 80 HOH HOH . 
H 7 HOH A 95 1395 96 HOH HOH . 
I 7 HOH B 1 1201 57 HOH HOH . 
I 7 HOH B 2 1202 117 HOH HOH . 
I 7 HOH B 3 1203 45 HOH HOH . 
I 7 HOH B 4 1204 23 HOH HOH . 
I 7 HOH B 5 1205 19 HOH HOH . 
I 7 HOH B 6 1206 3 HOH HOH . 
I 7 HOH B 7 1207 56 HOH HOH . 
I 7 HOH B 8 1208 10 HOH HOH . 
I 7 HOH B 9 1209 24 HOH HOH . 
I 7 HOH B 10 1210 1 HOH HOH . 
I 7 HOH B 11 1211 21 HOH HOH . 
I 7 HOH B 12 1212 38 HOH HOH . 
I 7 HOH B 13 1213 16 HOH HOH . 
I 7 HOH B 14 1214 86 HOH HOH . 
I 7 HOH B 15 1215 110 HOH HOH . 
I 7 HOH B 16 1216 93 HOH HOH . 
I 7 HOH B 17 1217 81 HOH HOH . 
I 7 HOH B 18 1218 97 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . F 6 -0.929 -4.772 -7.669 1 53.25 ? C1 GOL 1204 A 1 
HETATM 2 O O1 GOL . . . F 6 -2.266 -4.89 -7.278 1 62.05 ? O1 GOL 1204 A 1 
HETATM 3 C C2 GOL . . . F 6 -0.442 -6.108 -8.361 1 54.59 ? C2 GOL 1204 A 1 
HETATM 4 O O2 GOL . . . F 6 0.957 -6.237 -8.293 1 47.66 ? O2 GOL 1204 A 1 
HETATM 5 C C3 GOL . . . F 6 -1.197 -7.287 -7.64 1 62.24 ? C3 GOL 1204 A 1 
HETATM 6 O O3 GOL . . . F 6 -1.287 -8.401 -8.529 1 40.12 ? O3 GOL 1204 A 1 
#
_model_server_stats.io_time_ms              68 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#