data_6KRT
#
_model_server_result.job_id            nkbEW1sbmFZt5I0-ycSNng 
_model_server_result.datetime_utc      '2025-08-31 21:20:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6krt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
#
_entry.id    6KRT 
#
_exptl.entry_id    6KRT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6KRT 
_cell.length_a            74.148 
_cell.length_b            88.849 
_cell.length_c            129.352 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6KRT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     6KRT 
_atom_sites.fract_transf_matrix[1][1]    0.013487 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011255 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007731 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FAD A 1 501 3485 FAD FAD . 
D 2 FAD B 1 501 3484 FAD FAD . 
E 3 HOH A 1 601 17 HOH HOH . 
E 3 HOH A 2 602 26 HOH HOH . 
E 3 HOH A 3 603 16 HOH HOH . 
E 3 HOH A 4 604 14 HOH HOH . 
E 3 HOH A 5 605 23 HOH HOH . 
E 3 HOH A 6 606 22 HOH HOH . 
E 3 HOH A 7 607 24 HOH HOH . 
E 3 HOH A 8 608 13 HOH HOH . 
E 3 HOH A 9 609 3 HOH HOH . 
E 3 HOH A 10 610 25 HOH HOH . 
E 3 HOH A 11 611 27 HOH HOH . 
E 3 HOH A 12 612 8 HOH HOH . 
E 3 HOH A 13 613 2 HOH HOH . 
E 3 HOH A 14 614 21 HOH HOH . 
F 3 HOH B 1 601 19 HOH HOH . 
F 3 HOH B 2 602 11 HOH HOH . 
F 3 HOH B 3 603 9 HOH HOH . 
F 3 HOH B 4 604 10 HOH HOH . 
F 3 HOH B 5 605 12 HOH HOH . 
F 3 HOH B 6 606 1 HOH HOH . 
F 3 HOH B 7 607 15 HOH HOH . 
F 3 HOH B 8 608 6 HOH HOH . 
F 3 HOH B 9 609 5 HOH HOH . 
F 3 HOH B 10 610 7 HOH HOH . 
F 3 HOH B 11 611 20 HOH HOH . 
F 3 HOH B 12 612 18 HOH HOH . 
F 3 HOH B 13 613 4 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . C 2 -10.736 6.004 16.761 1 18.58 ? PA FAD 501 A 1 
HETATM 2 O O1A FAD . . . C 2 -12.024 6.008 17.555 1 17.57 ? O1A FAD 501 A 1 
HETATM 3 O O2A FAD . . . C 2 -10.702 6.105 15.265 1 19.25 ? O2A FAD 501 A 1 
HETATM 4 O O5B FAD . . . C 2 -10.089 4.572 17.091 1 19.64 ? O5B FAD 501 A 1 
HETATM 5 C C5B FAD . . . C 2 -9.854 3.95 18.37 1 20.76 ? C5B FAD 501 A 1 
HETATM 6 C C4B FAD . . . C 2 -9.844 2.411 18.157 1 23.17 ? C4B FAD 501 A 1 
HETATM 7 O O4B FAD . . . C 2 -9.45 1.693 19.348 1 22.58 ? O4B FAD 501 A 1 
HETATM 8 C C3B FAD . . . C 2 -11.229 1.87 17.839 1 22.47 ? C3B FAD 501 A 1 
HETATM 9 O O3B FAD . . . C 2 -11.218 0.913 16.792 1 23.56 ? O3B FAD 501 A 1 
HETATM 10 C C2B FAD . . . C 2 -11.685 1.221 19.142 1 21.7 ? C2B FAD 501 A 1 
HETATM 11 O O2B FAD . . . C 2 -12.738 0.255 18.98 1 18.78 ? O2B FAD 501 A 1 
HETATM 12 C C1B FAD . . . C 2 -10.369 0.639 19.6 1 21.88 ? C1B FAD 501 A 1 
HETATM 13 N N9A FAD . . . C 2 -10.324 0.375 21.062 1 21.11 ? N9A FAD 501 A 1 
HETATM 14 C C8A FAD . . . C 2 -10.665 1.224 22.027 1 19.9 ? C8A FAD 501 A 1 
HETATM 15 N N7A FAD . . . C 2 -10.452 0.704 23.23 1 18.79 ? N7A FAD 501 A 1 
HETATM 16 C C5A FAD . . . C 2 -9.941 -0.527 23.013 1 21.02 ? C5A FAD 501 A 1 
HETATM 17 C C6A FAD . . . C 2 -9.522 -1.657 23.883 1 21.63 ? C6A FAD 501 A 1 
HETATM 18 N N6A FAD . . . C 2 -9.6 -1.551 25.267 1 22.54 ? N6A FAD 501 A 1 
HETATM 19 N N1A FAD . . . C 2 -9.093 -2.76 23.263 1 20.23 ? N1A FAD 501 A 1 
HETATM 20 C C2A FAD . . . C 2 -9.053 -2.904 21.923 1 20.81 ? C2A FAD 501 A 1 
HETATM 21 N N3A FAD . . . C 2 -9.414 -1.917 21.066 1 20.79 ? N3A FAD 501 A 1 
HETATM 22 C C4A FAD . . . C 2 -9.856 -0.736 21.58 1 20.94 ? C4A FAD 501 A 1 
HETATM 23 N N1 FAD . . . C 2 -13.291 14.424 12.588 1 25.61 ? N1 FAD 501 A 1 
HETATM 24 C C2 FAD . . . C 2 -13.118 15.332 11.597 1 23.39 ? C2 FAD 501 A 1 
HETATM 25 O O2 FAD . . . C 2 -12.068 16.013 11.657 1 20.36 ? O2 FAD 501 A 1 
HETATM 26 N N3 FAD . . . C 2 -14.041 15.558 10.639 1 23.64 ? N3 FAD 501 A 1 
HETATM 27 C C4 FAD . . . C 2 -15.196 14.85 10.538 1 23.2 ? C4 FAD 501 A 1 
HETATM 28 O O4 FAD . . . C 2 -16.039 15.03 9.613 1 23.27 ? O4 FAD 501 A 1 
HETATM 29 C C4X FAD . . . C 2 -15.431 13.817 11.542 1 21.9 ? C4X FAD 501 A 1 
HETATM 30 N N5 FAD . . . C 2 -16.536 13.052 11.473 1 20.76 ? N5 FAD 501 A 1 
HETATM 31 C C5X FAD . . . C 2 -16.704 12.066 12.392 1 20.56 ? C5X FAD 501 A 1 
HETATM 32 C C6 FAD . . . C 2 -17.849 11.301 12.33 1 19.4 ? C6 FAD 501 A 1 
HETATM 33 C C7 FAD . . . C 2 -18.085 10.292 13.247 1 19.13 ? C7 FAD 501 A 1 
HETATM 34 C C7M FAD . . . C 2 -19.3 9.442 13.173 1 18.9 ? C7M FAD 501 A 1 
HETATM 35 C C8 FAD . . . C 2 -17.134 10.048 14.322 1 19.77 ? C8 FAD 501 A 1 
HETATM 36 C C8M FAD . . . C 2 -17.396 8.985 15.322 1 22.86 ? C8M FAD 501 A 1 
HETATM 37 C C9 FAD . . . C 2 -16 10.814 14.431 1 21.43 ? C9 FAD 501 A 1 
HETATM 38 C C9A FAD . . . C 2 -15.715 11.831 13.504 1 21.15 ? C9A FAD 501 A 1 
HETATM 39 N N10 FAD . . . C 2 -14.555 12.634 13.658 1 23.25 ? N10 FAD 501 A 1 
HETATM 40 C C10 FAD . . . C 2 -14.371 13.604 12.609 1 25.2 ? C10 FAD 501 A 1 
HETATM 41 C C1' FAD . . . C 2 -13.481 12.33 14.693 1 29.02 ? C1' FAD 501 A 1 
HETATM 42 C C2' FAD . . . C 2 -12.528 11.279 13.971 1 29.58 ? C2' FAD 501 A 1 
HETATM 43 O O2' FAD . . . C 2 -13.379 10.293 13.452 1 31.36 ? O2' FAD 501 A 1 
HETATM 44 C C3' FAD . . . C 2 -11.396 10.358 14.544 1 32.75 ? C3' FAD 501 A 1 
HETATM 45 O O3' FAD . . . C 2 -11.522 8.901 14.481 1 29.67 ? O3' FAD 501 A 1 
HETATM 46 C C4' FAD . . . C 2 -11.223 10.687 15.954 1 32.53 ? C4' FAD 501 A 1 
HETATM 47 O O4' FAD . . . C 2 -11.11 12.141 16.027 1 29.1 ? O4' FAD 501 A 1 
HETATM 48 C C5' FAD . . . C 2 -10.029 9.873 16.531 1 28.82 ? C5' FAD 501 A 1 
HETATM 49 O O5' FAD . . . C 2 -9.288 8.848 15.86 1 26.01 ? O5' FAD 501 A 1 
HETATM 50 P P FAD . . . C 2 -8.495 7.835 16.883 1 22.81 ? P FAD 501 A 1 
HETATM 51 O O1P FAD . . . C 2 -7.907 8.578 18.093 1 18.12 ? O1P FAD 501 A 1 
HETATM 52 O O2P FAD . . . C 2 -7.548 6.862 16.204 1 21.54 ? O2P FAD 501 A 1 
HETATM 53 O O3P FAD . . . C 2 -9.75 7.038 17.513 1 18.4 ? O3P FAD 501 A 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    55 
_model_server_stats.query_time_ms           342 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           53 
#