data_6KRT
#
_model_server_result.job_id            C51EFOM8RtZDOrZyH3j0yA 
_model_server_result.datetime_utc      '2025-08-31 21:19:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6krt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":501}' 
#
_entry.id    6KRT 
#
_exptl.entry_id    6KRT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6KRT 
_cell.length_a            74.148 
_cell.length_b            88.849 
_cell.length_c            129.352 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6KRT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     6KRT 
_atom_sites.fract_transf_matrix[1][1]    0.013487 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011255 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007731 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FAD A 1 501 3485 FAD FAD . 
D 2 FAD B 1 501 3484 FAD FAD . 
E 3 HOH A 1 601 17 HOH HOH . 
E 3 HOH A 2 602 26 HOH HOH . 
E 3 HOH A 3 603 16 HOH HOH . 
E 3 HOH A 4 604 14 HOH HOH . 
E 3 HOH A 5 605 23 HOH HOH . 
E 3 HOH A 6 606 22 HOH HOH . 
E 3 HOH A 7 607 24 HOH HOH . 
E 3 HOH A 8 608 13 HOH HOH . 
E 3 HOH A 9 609 3 HOH HOH . 
E 3 HOH A 10 610 25 HOH HOH . 
E 3 HOH A 11 611 27 HOH HOH . 
E 3 HOH A 12 612 8 HOH HOH . 
E 3 HOH A 13 613 2 HOH HOH . 
E 3 HOH A 14 614 21 HOH HOH . 
F 3 HOH B 1 601 19 HOH HOH . 
F 3 HOH B 2 602 11 HOH HOH . 
F 3 HOH B 3 603 9 HOH HOH . 
F 3 HOH B 4 604 10 HOH HOH . 
F 3 HOH B 5 605 12 HOH HOH . 
F 3 HOH B 6 606 1 HOH HOH . 
F 3 HOH B 7 607 15 HOH HOH . 
F 3 HOH B 8 608 6 HOH HOH . 
F 3 HOH B 9 609 5 HOH HOH . 
F 3 HOH B 10 610 7 HOH HOH . 
F 3 HOH B 11 611 20 HOH HOH . 
F 3 HOH B 12 612 18 HOH HOH . 
F 3 HOH B 13 613 4 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . D 2 -49.763 57.773 15.566 1 15.49 ? PA FAD 501 B 1 
HETATM 2 O O1A FAD . . . D 2 -49.392 57.784 17.057 1 15.75 ? O1A FAD 501 B 1 
HETATM 3 O O2A FAD . . . D 2 -50.263 56.519 14.931 1 15.66 ? O2A FAD 501 B 1 
HETATM 4 O O5B FAD . . . D 2 -51.008 58.754 15.406 1 18.37 ? O5B FAD 501 B 1 
HETATM 5 C C5B FAD . . . D 2 -51.608 58.823 14.1 1 22.88 ? C5B FAD 501 B 1 
HETATM 6 C C4B FAD . . . D 2 -53.018 59.309 14.33 1 23.02 ? C4B FAD 501 B 1 
HETATM 7 O O4B FAD . . . D 2 -53.657 59.801 13.161 1 22.84 ? O4B FAD 501 B 1 
HETATM 8 C C3B FAD . . . D 2 -53.881 58.145 14.804 1 24.82 ? C3B FAD 501 B 1 
HETATM 9 O O3B FAD . . . D 2 -54.686 58.587 15.892 1 24.24 ? O3B FAD 501 B 1 
HETATM 10 C C2B FAD . . . D 2 -54.794 57.837 13.653 1 24.75 ? C2B FAD 501 B 1 
HETATM 11 O O2B FAD . . . D 2 -56.001 57.217 14.126 1 28.12 ? O2B FAD 501 B 1 
HETATM 12 C C1B FAD . . . D 2 -54.986 59.236 13.114 1 23.71 ? C1B FAD 501 B 1 
HETATM 13 N N9A FAD . . . D 2 -55.449 59.31 11.707 1 23.43 ? N9A FAD 501 B 1 
HETATM 14 C C8A FAD . . . D 2 -54.833 58.745 10.623 1 24.23 ? C8A FAD 501 B 1 
HETATM 15 N N7A FAD . . . D 2 -55.476 59.093 9.47 1 22.61 ? N7A FAD 501 B 1 
HETATM 16 C C5A FAD . . . D 2 -56.499 59.862 9.857 1 21.66 ? C5A FAD 501 B 1 
HETATM 17 C C6A FAD . . . D 2 -57.595 60.508 9.17 1 22.56 ? C6A FAD 501 B 1 
HETATM 18 N N6A FAD . . . D 2 -57.673 60.376 7.828 1 22.71 ? N6A FAD 501 B 1 
HETATM 19 N N1A FAD . . . D 2 -58.473 61.234 9.902 1 23.73 ? N1A FAD 501 B 1 
HETATM 20 C C2A FAD . . . D 2 -58.414 61.349 11.252 1 23.71 ? C2A FAD 501 B 1 
HETATM 21 N N3A FAD . . . D 2 -57.418 60.746 11.955 1 23.69 ? N3A FAD 501 B 1 
HETATM 22 C C4A FAD . . . D 2 -56.483 59.998 11.313 1 21.94 ? C4A FAD 501 B 1 
HETATM 23 N N1 FAD . . . D 2 -41.907 53.045 19.232 1 25.93 ? N1 FAD 501 B 1 
HETATM 24 C C2 FAD . . . D 2 -40.839 53.049 20.068 1 27.21 ? C2 FAD 501 B 1 
HETATM 25 O O2 FAD . . . D 2 -39.891 53.828 19.81 1 23.88 ? O2 FAD 501 B 1 
HETATM 26 N N3 FAD . . . D 2 -40.796 52.242 21.151 1 27.35 ? N3 FAD 501 B 1 
HETATM 27 C C4 FAD . . . D 2 -41.813 51.402 21.408 1 25 ? C4 FAD 501 B 1 
HETATM 28 O O4 FAD . . . D 2 -41.836 50.668 22.378 1 23.49 ? O4 FAD 501 B 1 
HETATM 29 C C4X FAD . . . D 2 -42.964 51.355 20.536 1 23.8 ? C4X FAD 501 B 1 
HETATM 30 N N5 FAD . . . D 2 -44.002 50.555 20.781 1 22.11 ? N5 FAD 501 B 1 
HETATM 31 C C5X FAD . . . D 2 -45.075 50.532 19.967 1 20.88 ? C5X FAD 501 B 1 
HETATM 32 C C6 FAD . . . D 2 -46.125 49.687 20.222 1 21.08 ? C6 FAD 501 B 1 
HETATM 33 C C7 FAD . . . D 2 -47.24 49.673 19.415 1 20.59 ? C7 FAD 501 B 1 
HETATM 34 C C7M FAD . . . D 2 -48.372 48.754 19.678 1 21.31 ? C7M FAD 501 B 1 
HETATM 35 C C8 FAD . . . D 2 -47.303 50.534 18.257 1 20.32 ? C8 FAD 501 B 1 
HETATM 36 C C8M FAD . . . D 2 -48.509 50.474 17.358 1 22.64 ? C8M FAD 501 B 1 
HETATM 37 C C9 FAD . . . D 2 -46.255 51.362 17.973 1 20.55 ? C9 FAD 501 B 1 
HETATM 38 C C9A FAD . . . D 2 -45.149 51.42 18.792 1 22.09 ? C9A FAD 501 B 1 
HETATM 39 N N10 FAD . . . D 2 -44.064 52.281 18.551 1 24.95 ? N10 FAD 501 B 1 
HETATM 40 C C10 FAD . . . D 2 -42.96 52.258 19.407 1 23.52 ? C10 FAD 501 B 1 
HETATM 41 C C1' FAD . . . D 2 -44.038 53.171 17.402 1 28.68 ? C1' FAD 501 B 1 
HETATM 42 C C2' FAD . . . D 2 -44.614 54.517 17.874 1 30.09 ? C2' FAD 501 B 1 
HETATM 43 O O2' FAD . . . D 2 -45.77 54.423 18.704 1 28.65 ? O2' FAD 501 B 1 
HETATM 44 C C3' FAD . . . D 2 -44.954 55.329 16.642 1 29.83 ? C3' FAD 501 B 1 
HETATM 45 O O3' FAD . . . D 2 -43.608 55.645 16.216 1 32.48 ? O3' FAD 501 B 1 
HETATM 46 C C4' FAD . . . D 2 -45.809 56.58 16.985 1 26.71 ? C4' FAD 501 B 1 
HETATM 47 O O4' FAD . . . D 2 -47.141 56.304 17.495 1 23.31 ? O4' FAD 501 B 1 
HETATM 48 C C5' FAD . . . D 2 -46.02 57.405 15.746 1 24.31 ? C5' FAD 501 B 1 
HETATM 49 O O5' FAD . . . D 2 -46.694 58.615 16.14 1 22.1 ? O5' FAD 501 B 1 
HETATM 50 P P FAD . . . D 2 -47.502 59.299 14.971 1 20.7 ? P FAD 501 B 1 
HETATM 51 O O1P FAD . . . D 2 -48.231 60.488 15.574 1 24.41 ? O1P FAD 501 B 1 
HETATM 52 O O2P FAD . . . D 2 -46.613 59.49 13.817 1 19.35 ? O2P FAD 501 B 1 
HETATM 53 O O3P FAD . . . D 2 -48.612 58.272 14.562 1 16.61 ? O3P FAD 501 B 1 
#
_model_server_stats.io_time_ms              87 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           422 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           53 
#