data_6KRZ
#
_model_server_result.job_id            sA44tGDY-7YOo3ZeioVLBQ 
_model_server_result.datetime_utc      '2024-11-04 22:40:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6krz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":401}' 
#
_entry.id    6KRZ 
#
_exptl.entry_id    6KRZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              94.971 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHATE ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6KRZ 
_cell.length_a            104.589 
_cell.length_b            119.35 
_cell.length_c            197.814 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6KRZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? trimeric 3 author_defined_assembly 1 
? trimeric 3 author_defined_assembly 2 
? trimeric 3 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,J,K,L,M,T,W,X 1 1 
B,F,G,N,O,U,Y,Z 2 1 
C,H,I,P,Q,R,S,V,AA,BA 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 J N N 
? 4 N N N 
? 4 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 22 D CYS 22 1_555 D SG CYS 96 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf2 E SG CYS 23 E CYS 23 1_555 E SG CYS 88 E CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf3 F SG CYS 22 F CYS 22 1_555 F SG CYS 96 F CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf4 G SG CYS 23 G CYS 23 1_555 G SG CYS 88 G CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf5 H SG CYS 22 H CYS 22 1_555 H SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf6 I SG CYS 23 I CYS 23 1_555 I SG CYS 88 I CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
metalc ? metalc1 A NE2 HIS 121 A HIS 191 1_555 M ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? 
metalc ? metalc2 A NE2 HIS 267 A HIS 337 1_555 M ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? 
metalc ? metalc3 A NE2 HIS 271 A HIS 341 1_555 M ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? 
metalc ? metalc4 B NE2 HIS 121 B HIS 191 1_555 O ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? 
metalc ? metalc5 B NE2 HIS 267 B HIS 337 1_555 O ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? 
metalc ? metalc6 B NE2 HIS 271 B HIS 341 1_555 O ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? 
metalc ? metalc7 C NE2 HIS 121 C HIS 191 1_555 Q ZN ZN . C ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? 
metalc ? metalc8 C NE2 HIS 267 C HIS 337 1_555 Q ZN ZN . C ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? 
metalc ? metalc9 C NE2 HIS 271 C HIS 341 1_555 Q ZN ZN . C ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
#
_chem_comp.formula           'O4 P -3' 
_chem_comp.formula_weight    94.971 
_chem_comp.id                PO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1 PO4 doub 377 n n 
P O2 PO4 sing 378 n n 
P O3 PO4 sing 379 n n 
P O4 PO4 sing 380 n n 
#
_atom_sites.entry_id                     6KRZ 
_atom_sites.fract_transf_matrix[1][1]    0.009561 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008379 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005055 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
J 4 PO4 A 1 401 401 PO4 PO4 . 
K 5 OLA A 1 402 405 OLA OLA . 
L 5 OLA A 1 403 410 OLA OLA . 
M 6 ZN A 1 404 400 ZN ZN . 
N 4 PO4 B 1 401 401 PO4 PO4 . 
O 6 ZN B 1 402 400 ZN ZN . 
P 4 PO4 C 1 401 401 PO4 PO4 . 
Q 6 ZN C 1 402 400 ZN ZN . 
R 7 OLB C 1 403 410 OLB OLB . 
S 7 OLB C 1 404 405 OLB OLB . 
T 8 HOH A 1 501 3 HOH HOH . 
T 8 HOH A 2 502 39 HOH HOH . 
T 8 HOH A 3 503 9 HOH HOH . 
T 8 HOH A 4 504 55 HOH HOH . 
T 8 HOH A 5 505 41 HOH HOH . 
T 8 HOH A 6 506 76 HOH HOH . 
T 8 HOH A 7 507 88 HOH HOH . 
T 8 HOH A 8 508 31 HOH HOH . 
T 8 HOH A 9 509 2 HOH HOH . 
T 8 HOH A 10 510 14 HOH HOH . 
T 8 HOH A 11 511 82 HOH HOH . 
T 8 HOH A 12 512 77 HOH HOH . 
T 8 HOH A 13 513 19 HOH HOH . 
T 8 HOH A 14 514 12 HOH HOH . 
U 8 HOH B 1 501 22 HOH HOH . 
U 8 HOH B 2 502 78 HOH HOH . 
U 8 HOH B 3 503 34 HOH HOH . 
U 8 HOH B 4 504 44 HOH HOH . 
U 8 HOH B 5 505 42 HOH HOH . 
U 8 HOH B 6 506 18 HOH HOH . 
U 8 HOH B 7 507 67 HOH HOH . 
U 8 HOH B 8 508 8 HOH HOH . 
U 8 HOH B 9 509 50 HOH HOH . 
U 8 HOH B 10 510 63 HOH HOH . 
U 8 HOH B 11 511 17 HOH HOH . 
U 8 HOH B 12 512 79 HOH HOH . 
U 8 HOH B 13 513 40 HOH HOH . 
U 8 HOH B 14 514 23 HOH HOH . 
U 8 HOH B 15 515 89 HOH HOH . 
U 8 HOH B 16 516 69 HOH HOH . 
U 8 HOH B 17 517 71 HOH HOH . 
U 8 HOH B 18 518 80 HOH HOH . 
U 8 HOH B 19 519 75 HOH HOH . 
U 8 HOH B 20 520 84 HOH HOH . 
U 8 HOH B 21 521 46 HOH HOH . 
V 8 HOH C 1 501 60 HOH HOH . 
V 8 HOH C 2 502 29 HOH HOH . 
V 8 HOH C 3 503 86 HOH HOH . 
W 8 HOH D 1 201 32 HOH HOH . 
W 8 HOH D 2 202 6 HOH HOH . 
W 8 HOH D 3 203 25 HOH HOH . 
W 8 HOH D 4 204 87 HOH HOH . 
W 8 HOH D 5 205 16 HOH HOH . 
W 8 HOH D 6 206 72 HOH HOH . 
W 8 HOH D 7 207 27 HOH HOH . 
W 8 HOH D 8 208 54 HOH HOH . 
W 8 HOH D 9 209 43 HOH HOH . 
X 8 HOH E 1 201 35 HOH HOH . 
X 8 HOH E 2 202 30 HOH HOH . 
X 8 HOH E 3 203 1 HOH HOH . 
X 8 HOH E 4 204 4 HOH HOH . 
X 8 HOH E 5 205 52 HOH HOH . 
X 8 HOH E 6 206 33 HOH HOH . 
X 8 HOH E 7 207 37 HOH HOH . 
X 8 HOH E 8 208 48 HOH HOH . 
X 8 HOH E 9 209 64 HOH HOH . 
Y 8 HOH F 1 201 21 HOH HOH . 
Y 8 HOH F 2 202 66 HOH HOH . 
Y 8 HOH F 3 203 74 HOH HOH . 
Y 8 HOH F 4 204 56 HOH HOH . 
Y 8 HOH F 5 205 7 HOH HOH . 
Y 8 HOH F 6 206 83 HOH HOH . 
Y 8 HOH F 7 207 81 HOH HOH . 
Y 8 HOH F 8 208 15 HOH HOH . 
Z 8 HOH G 1 201 10 HOH HOH . 
Z 8 HOH G 2 202 28 HOH HOH . 
Z 8 HOH G 3 203 26 HOH HOH . 
Z 8 HOH G 4 204 24 HOH HOH . 
Z 8 HOH G 5 205 38 HOH HOH . 
Z 8 HOH G 6 206 49 HOH HOH . 
Z 8 HOH G 7 207 70 HOH HOH . 
Z 8 HOH G 8 208 62 HOH HOH . 
AA 8 HOH H 1 201 53 HOH HOH . 
AA 8 HOH H 2 202 57 HOH HOH . 
AA 8 HOH H 3 203 11 HOH HOH . 
AA 8 HOH H 4 204 36 HOH HOH . 
AA 8 HOH H 5 205 13 HOH HOH . 
AA 8 HOH H 6 206 59 HOH HOH . 
AA 8 HOH H 7 207 58 HOH HOH . 
AA 8 HOH H 8 208 61 HOH HOH . 
AA 8 HOH H 9 209 85 HOH HOH . 
AA 8 HOH H 10 210 47 HOH HOH . 
BA 8 HOH I 1 201 51 HOH HOH . 
BA 8 HOH I 2 202 20 HOH HOH . 
BA 8 HOH I 3 203 45 HOH HOH . 
BA 8 HOH I 4 204 5 HOH HOH . 
BA 8 HOH I 5 205 73 HOH HOH . 
BA 8 HOH I 6 206 65 HOH HOH . 
BA 8 HOH I 7 207 68 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P PO4 . . . J 4 -25.845 -67.518 33.953 1 145.83 ? P PO4 401 A 1 
HETATM 2 O O1 PO4 . . . J 4 -26.363 -68.375 32.822 1 146.59 ? O1 PO4 401 A 1 
HETATM 3 O O2 PO4 . . . J 4 -24.612 -66.771 33.501 1 144.23 ? O2 PO4 401 A 1 
HETATM 4 O O3 PO4 . . . J 4 -25.496 -68.4 35.128 1 145.75 ? O3 PO4 401 A 1 
HETATM 5 O O4 PO4 . . . J 4 -26.908 -66.527 34.363 1 144.2 ? O4 PO4 401 A 1 
#
_model_server_stats.io_time_ms              43 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           5 
#