data_6KRZ # _model_server_result.job_id wClECkgTFPcizG1xkn1Brw _model_server_result.datetime_utc '2024-11-04 22:43:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6krz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":401}' # _entry.id 6KRZ # _exptl.entry_id 6KRZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6KRZ _cell.length_a 104.589 _cell.length_b 119.35 _cell.length_c 197.814 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KRZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 ? trimeric 3 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,J,K,L,M,T,W,X 1 1 B,F,G,N,O,U,Y,Z 2 1 C,H,I,P,Q,R,S,V,AA,BA 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 N N N ? 4 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 22 D CYS 22 1_555 D SG CYS 96 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 E SG CYS 23 E CYS 23 1_555 E SG CYS 88 E CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 F SG CYS 22 F CYS 22 1_555 F SG CYS 96 F CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 G SG CYS 23 G CYS 23 1_555 G SG CYS 88 G CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf5 H SG CYS 22 H CYS 22 1_555 H SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 I SG CYS 23 I CYS 23 1_555 I SG CYS 88 I CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc1 A NE2 HIS 121 A HIS 191 1_555 M ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc2 A NE2 HIS 267 A HIS 337 1_555 M ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc3 A NE2 HIS 271 A HIS 341 1_555 M ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? metalc ? metalc4 B NE2 HIS 121 B HIS 191 1_555 O ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc5 B NE2 HIS 267 B HIS 337 1_555 O ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc6 B NE2 HIS 271 B HIS 341 1_555 O ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc7 C NE2 HIS 121 C HIS 191 1_555 Q ZN ZN . C ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc8 C NE2 HIS 267 C HIS 337 1_555 Q ZN ZN . C ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc9 C NE2 HIS 271 C HIS 341 1_555 Q ZN ZN . C ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 377 n n P O2 PO4 sing 378 n n P O3 PO4 sing 379 n n P O4 PO4 sing 380 n n # _atom_sites.entry_id 6KRZ _atom_sites.fract_transf_matrix[1][1] 0.009561 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008379 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005055 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 4 PO4 A 1 401 401 PO4 PO4 . K 5 OLA A 1 402 405 OLA OLA . L 5 OLA A 1 403 410 OLA OLA . M 6 ZN A 1 404 400 ZN ZN . N 4 PO4 B 1 401 401 PO4 PO4 . O 6 ZN B 1 402 400 ZN ZN . P 4 PO4 C 1 401 401 PO4 PO4 . Q 6 ZN C 1 402 400 ZN ZN . R 7 OLB C 1 403 410 OLB OLB . S 7 OLB C 1 404 405 OLB OLB . T 8 HOH A 1 501 3 HOH HOH . T 8 HOH A 2 502 39 HOH HOH . T 8 HOH A 3 503 9 HOH HOH . T 8 HOH A 4 504 55 HOH HOH . T 8 HOH A 5 505 41 HOH HOH . T 8 HOH A 6 506 76 HOH HOH . T 8 HOH A 7 507 88 HOH HOH . T 8 HOH A 8 508 31 HOH HOH . T 8 HOH A 9 509 2 HOH HOH . T 8 HOH A 10 510 14 HOH HOH . T 8 HOH A 11 511 82 HOH HOH . T 8 HOH A 12 512 77 HOH HOH . T 8 HOH A 13 513 19 HOH HOH . T 8 HOH A 14 514 12 HOH HOH . U 8 HOH B 1 501 22 HOH HOH . U 8 HOH B 2 502 78 HOH HOH . U 8 HOH B 3 503 34 HOH HOH . U 8 HOH B 4 504 44 HOH HOH . U 8 HOH B 5 505 42 HOH HOH . U 8 HOH B 6 506 18 HOH HOH . U 8 HOH B 7 507 67 HOH HOH . U 8 HOH B 8 508 8 HOH HOH . U 8 HOH B 9 509 50 HOH HOH . U 8 HOH B 10 510 63 HOH HOH . U 8 HOH B 11 511 17 HOH HOH . U 8 HOH B 12 512 79 HOH HOH . U 8 HOH B 13 513 40 HOH HOH . U 8 HOH B 14 514 23 HOH HOH . U 8 HOH B 15 515 89 HOH HOH . U 8 HOH B 16 516 69 HOH HOH . U 8 HOH B 17 517 71 HOH HOH . U 8 HOH B 18 518 80 HOH HOH . U 8 HOH B 19 519 75 HOH HOH . U 8 HOH B 20 520 84 HOH HOH . U 8 HOH B 21 521 46 HOH HOH . V 8 HOH C 1 501 60 HOH HOH . V 8 HOH C 2 502 29 HOH HOH . V 8 HOH C 3 503 86 HOH HOH . W 8 HOH D 1 201 32 HOH HOH . W 8 HOH D 2 202 6 HOH HOH . W 8 HOH D 3 203 25 HOH HOH . W 8 HOH D 4 204 87 HOH HOH . W 8 HOH D 5 205 16 HOH HOH . W 8 HOH D 6 206 72 HOH HOH . W 8 HOH D 7 207 27 HOH HOH . W 8 HOH D 8 208 54 HOH HOH . W 8 HOH D 9 209 43 HOH HOH . X 8 HOH E 1 201 35 HOH HOH . X 8 HOH E 2 202 30 HOH HOH . X 8 HOH E 3 203 1 HOH HOH . X 8 HOH E 4 204 4 HOH HOH . X 8 HOH E 5 205 52 HOH HOH . X 8 HOH E 6 206 33 HOH HOH . X 8 HOH E 7 207 37 HOH HOH . X 8 HOH E 8 208 48 HOH HOH . X 8 HOH E 9 209 64 HOH HOH . Y 8 HOH F 1 201 21 HOH HOH . Y 8 HOH F 2 202 66 HOH HOH . Y 8 HOH F 3 203 74 HOH HOH . Y 8 HOH F 4 204 56 HOH HOH . Y 8 HOH F 5 205 7 HOH HOH . Y 8 HOH F 6 206 83 HOH HOH . Y 8 HOH F 7 207 81 HOH HOH . Y 8 HOH F 8 208 15 HOH HOH . Z 8 HOH G 1 201 10 HOH HOH . Z 8 HOH G 2 202 28 HOH HOH . Z 8 HOH G 3 203 26 HOH HOH . Z 8 HOH G 4 204 24 HOH HOH . Z 8 HOH G 5 205 38 HOH HOH . Z 8 HOH G 6 206 49 HOH HOH . Z 8 HOH G 7 207 70 HOH HOH . Z 8 HOH G 8 208 62 HOH HOH . AA 8 HOH H 1 201 53 HOH HOH . AA 8 HOH H 2 202 57 HOH HOH . AA 8 HOH H 3 203 11 HOH HOH . AA 8 HOH H 4 204 36 HOH HOH . AA 8 HOH H 5 205 13 HOH HOH . AA 8 HOH H 6 206 59 HOH HOH . AA 8 HOH H 7 207 58 HOH HOH . AA 8 HOH H 8 208 61 HOH HOH . AA 8 HOH H 9 209 85 HOH HOH . AA 8 HOH H 10 210 47 HOH HOH . BA 8 HOH I 1 201 51 HOH HOH . BA 8 HOH I 2 202 20 HOH HOH . BA 8 HOH I 3 203 45 HOH HOH . BA 8 HOH I 4 204 5 HOH HOH . BA 8 HOH I 5 205 73 HOH HOH . BA 8 HOH I 6 206 65 HOH HOH . BA 8 HOH I 7 207 68 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . P 4 12.946 -41.225 79.98 1 115.12 ? P PO4 401 C 1 HETATM 2 O O1 PO4 . . . P 4 12.697 -40.286 78.826 1 118.49 ? O1 PO4 401 C 1 HETATM 3 O O2 PO4 . . . P 4 11.624 -41.776 80.46 1 111.04 ? O2 PO4 401 C 1 HETATM 4 O O3 PO4 . . . P 4 13.832 -42.361 79.527 1 113.57 ? O3 PO4 401 C 1 HETATM 5 O O4 PO4 . . . P 4 13.625 -40.464 81.095 1 117.02 ? O4 PO4 401 C 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 5 #