data_6KRZ
#
_model_server_result.job_id            zF_W6zSrI8LnJdWIAqrFbw 
_model_server_result.datetime_utc      '2024-11-23 17:23:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6krz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":403}' 
#
_entry.id    6KRZ 
#
_exptl.entry_id    6KRZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6KRZ 
_cell.length_a            104.589 
_cell.length_b            119.35 
_cell.length_c            197.814 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6KRZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? trimeric 3 author_defined_assembly 1 
? trimeric 3 author_defined_assembly 2 
? trimeric 3 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,J,K,L,M,T,W,X 1 1 
B,F,G,N,O,U,Y,Z 2 1 
C,H,I,P,Q,R,S,V,AA,BA 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 R N N 
? 7 S N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 22 D CYS 22 1_555 D SG CYS 96 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf2 E SG CYS 23 E CYS 23 1_555 E SG CYS 88 E CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf3 F SG CYS 22 F CYS 22 1_555 F SG CYS 96 F CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf4 G SG CYS 23 G CYS 23 1_555 G SG CYS 88 G CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf5 H SG CYS 22 H CYS 22 1_555 H SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf6 I SG CYS 23 I CYS 23 1_555 I SG CYS 88 I CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
metalc ? metalc1 A NE2 HIS 121 A HIS 191 1_555 M ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? 
metalc ? metalc2 A NE2 HIS 267 A HIS 337 1_555 M ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? 
metalc ? metalc3 A NE2 HIS 271 A HIS 341 1_555 M ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? 
metalc ? metalc4 B NE2 HIS 121 B HIS 191 1_555 O ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? 
metalc ? metalc5 B NE2 HIS 267 B HIS 337 1_555 O ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? 
metalc ? metalc6 B NE2 HIS 271 B HIS 341 1_555 O ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? 
metalc ? metalc7 C NE2 HIS 121 C HIS 191 1_555 Q ZN ZN . C ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? 
metalc ? metalc8 C NE2 HIS 267 C HIS 337 1_555 Q ZN ZN . C ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? 
metalc ? metalc9 C NE2 HIS 271 C HIS 341 1_555 Q ZN ZN . C ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                OLB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O19 OLB doub 290 n n 
C1 O20 OLB sing 291 n n 
C2 C1 OLB sing 292 n n 
C3 C2 OLB sing 293 n n 
C4 C3 OLB sing 294 n n 
C5 C4 OLB sing 295 n n 
C5 C6 OLB sing 296 n n 
O20 C21 OLB sing 297 n n 
C21 C22 OLB sing 298 n n 
C22 C24 OLB sing 299 n n 
O23 C22 OLB sing 300 n n 
C24 O25 OLB sing 301 n n 
C6 C7 OLB sing 302 n n 
C7 C8 OLB sing 303 n n 
C8 C9 OLB sing 304 n n 
C9 C10 OLB doub 305 z n 
C10 C11 OLB sing 306 n n 
C2 H2 OLB sing 307 n n 
C2 H2A OLB sing 308 n n 
C3 H3 OLB sing 309 n n 
C3 H3A OLB sing 310 n n 
C4 H4 OLB sing 311 n n 
C4 H4A OLB sing 312 n n 
C5 H5 OLB sing 313 n n 
C5 H5A OLB sing 314 n n 
C21 H21 OLB sing 315 n n 
C21 H21A OLB sing 316 n n 
C22 H22 OLB sing 317 n n 
O23 HO23 OLB sing 318 n n 
C24 H24 OLB sing 319 n n 
C24 H24A OLB sing 320 n n 
O25 HO25 OLB sing 321 n n 
C6 H16 OLB sing 322 n n 
C6 H17 OLB sing 323 n n 
C7 H18 OLB sing 324 n n 
C7 H19 OLB sing 325 n n 
C8 H20 OLB sing 326 n n 
C8 H211 OLB sing 327 n n 
C9 H221 OLB sing 328 n n 
C10 H23 OLB sing 329 n n 
C11 H241 OLB sing 330 n n 
C11 H25 OLB sing 331 n n 
C11 C12 OLB sing 332 n n 
C12 H26 OLB sing 333 n n 
C12 C13 OLB sing 334 n n 
C12 H27 OLB sing 335 n n 
C13 C14 OLB sing 336 n n 
C13 H28 OLB sing 337 n n 
C13 H29 OLB sing 338 n n 
C14 H30 OLB sing 339 n n 
C14 H31 OLB sing 340 n n 
C14 C15 OLB sing 341 n n 
C15 C16 OLB sing 342 n n 
C15 H32 OLB sing 343 n n 
C15 H33 OLB sing 344 n n 
C16 H34 OLB sing 345 n n 
C16 H35 OLB sing 346 n n 
C16 C17 OLB sing 347 n n 
C17 C18 OLB sing 348 n n 
C17 H36 OLB sing 349 n n 
C17 H37 OLB sing 350 n n 
C18 H38 OLB sing 351 n n 
C18 H39 OLB sing 352 n n 
C18 H40 OLB sing 353 n n 
#
_atom_sites.entry_id                     6KRZ 
_atom_sites.fract_transf_matrix[1][1]    0.009561 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008379 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005055 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
J 4 PO4 A 1 401 401 PO4 PO4 . 
K 5 OLA A 1 402 405 OLA OLA . 
L 5 OLA A 1 403 410 OLA OLA . 
M 6 ZN A 1 404 400 ZN ZN . 
N 4 PO4 B 1 401 401 PO4 PO4 . 
O 6 ZN B 1 402 400 ZN ZN . 
P 4 PO4 C 1 401 401 PO4 PO4 . 
Q 6 ZN C 1 402 400 ZN ZN . 
R 7 OLB C 1 403 410 OLB OLB . 
S 7 OLB C 1 404 405 OLB OLB . 
T 8 HOH A 1 501 3 HOH HOH . 
T 8 HOH A 2 502 39 HOH HOH . 
T 8 HOH A 3 503 9 HOH HOH . 
T 8 HOH A 4 504 55 HOH HOH . 
T 8 HOH A 5 505 41 HOH HOH . 
T 8 HOH A 6 506 76 HOH HOH . 
T 8 HOH A 7 507 88 HOH HOH . 
T 8 HOH A 8 508 31 HOH HOH . 
T 8 HOH A 9 509 2 HOH HOH . 
T 8 HOH A 10 510 14 HOH HOH . 
T 8 HOH A 11 511 82 HOH HOH . 
T 8 HOH A 12 512 77 HOH HOH . 
T 8 HOH A 13 513 19 HOH HOH . 
T 8 HOH A 14 514 12 HOH HOH . 
U 8 HOH B 1 501 22 HOH HOH . 
U 8 HOH B 2 502 78 HOH HOH . 
U 8 HOH B 3 503 34 HOH HOH . 
U 8 HOH B 4 504 44 HOH HOH . 
U 8 HOH B 5 505 42 HOH HOH . 
U 8 HOH B 6 506 18 HOH HOH . 
U 8 HOH B 7 507 67 HOH HOH . 
U 8 HOH B 8 508 8 HOH HOH . 
U 8 HOH B 9 509 50 HOH HOH . 
U 8 HOH B 10 510 63 HOH HOH . 
U 8 HOH B 11 511 17 HOH HOH . 
U 8 HOH B 12 512 79 HOH HOH . 
U 8 HOH B 13 513 40 HOH HOH . 
U 8 HOH B 14 514 23 HOH HOH . 
U 8 HOH B 15 515 89 HOH HOH . 
U 8 HOH B 16 516 69 HOH HOH . 
U 8 HOH B 17 517 71 HOH HOH . 
U 8 HOH B 18 518 80 HOH HOH . 
U 8 HOH B 19 519 75 HOH HOH . 
U 8 HOH B 20 520 84 HOH HOH . 
U 8 HOH B 21 521 46 HOH HOH . 
V 8 HOH C 1 501 60 HOH HOH . 
V 8 HOH C 2 502 29 HOH HOH . 
V 8 HOH C 3 503 86 HOH HOH . 
W 8 HOH D 1 201 32 HOH HOH . 
W 8 HOH D 2 202 6 HOH HOH . 
W 8 HOH D 3 203 25 HOH HOH . 
W 8 HOH D 4 204 87 HOH HOH . 
W 8 HOH D 5 205 16 HOH HOH . 
W 8 HOH D 6 206 72 HOH HOH . 
W 8 HOH D 7 207 27 HOH HOH . 
W 8 HOH D 8 208 54 HOH HOH . 
W 8 HOH D 9 209 43 HOH HOH . 
X 8 HOH E 1 201 35 HOH HOH . 
X 8 HOH E 2 202 30 HOH HOH . 
X 8 HOH E 3 203 1 HOH HOH . 
X 8 HOH E 4 204 4 HOH HOH . 
X 8 HOH E 5 205 52 HOH HOH . 
X 8 HOH E 6 206 33 HOH HOH . 
X 8 HOH E 7 207 37 HOH HOH . 
X 8 HOH E 8 208 48 HOH HOH . 
X 8 HOH E 9 209 64 HOH HOH . 
Y 8 HOH F 1 201 21 HOH HOH . 
Y 8 HOH F 2 202 66 HOH HOH . 
Y 8 HOH F 3 203 74 HOH HOH . 
Y 8 HOH F 4 204 56 HOH HOH . 
Y 8 HOH F 5 205 7 HOH HOH . 
Y 8 HOH F 6 206 83 HOH HOH . 
Y 8 HOH F 7 207 81 HOH HOH . 
Y 8 HOH F 8 208 15 HOH HOH . 
Z 8 HOH G 1 201 10 HOH HOH . 
Z 8 HOH G 2 202 28 HOH HOH . 
Z 8 HOH G 3 203 26 HOH HOH . 
Z 8 HOH G 4 204 24 HOH HOH . 
Z 8 HOH G 5 205 38 HOH HOH . 
Z 8 HOH G 6 206 49 HOH HOH . 
Z 8 HOH G 7 207 70 HOH HOH . 
Z 8 HOH G 8 208 62 HOH HOH . 
AA 8 HOH H 1 201 53 HOH HOH . 
AA 8 HOH H 2 202 57 HOH HOH . 
AA 8 HOH H 3 203 11 HOH HOH . 
AA 8 HOH H 4 204 36 HOH HOH . 
AA 8 HOH H 5 205 13 HOH HOH . 
AA 8 HOH H 6 206 59 HOH HOH . 
AA 8 HOH H 7 207 58 HOH HOH . 
AA 8 HOH H 8 208 61 HOH HOH . 
AA 8 HOH H 9 209 85 HOH HOH . 
AA 8 HOH H 10 210 47 HOH HOH . 
BA 8 HOH I 1 201 51 HOH HOH . 
BA 8 HOH I 2 202 20 HOH HOH . 
BA 8 HOH I 3 203 45 HOH HOH . 
BA 8 HOH I 4 204 5 HOH HOH . 
BA 8 HOH I 5 205 73 HOH HOH . 
BA 8 HOH I 6 206 65 HOH HOH . 
BA 8 HOH I 7 207 68 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 OLB . . . R 7 -9.531 -53.211 93.382 1 121.41 ? C1 OLB 403 C 1 
HETATM 2 C C2 OLB . . . R 7 -10.622 -52.495 94.178 1 117.93 ? C2 OLB 403 C 1 
HETATM 3 C C3 OLB . . . R 7 -10.222 -52.4 95.648 1 114.55 ? C3 OLB 403 C 1 
HETATM 4 C C4 OLB . . . R 7 -11.229 -51.519 96.384 1 112.02 ? C4 OLB 403 C 1 
HETATM 5 C C5 OLB . . . R 7 -11.088 -51.734 97.889 1 110.4 ? C5 OLB 403 C 1 
HETATM 6 O O19 OLB . . . R 7 -9.573 -53.202 92.196 1 121.64 ? O19 OLB 403 C 1 
HETATM 7 O O20 OLB . . . R 7 -8.489 -53.874 94.046 1 122.84 ? O20 OLB 403 C 1 
HETATM 8 C C21 OLB . . . R 7 -7.206 -53.593 93.556 1 123.25 ? C21 OLB 403 C 1 
HETATM 9 C C22 OLB . . . R 7 -6.736 -54.715 92.629 1 122.22 ? C22 OLB 403 C 1 
HETATM 10 O O23 OLB . . . R 7 -7.812 -55.159 91.851 1 124.48 ? O23 OLB 403 C 1 
HETATM 11 C C24 OLB . . . R 7 -5.633 -54.206 91.704 1 118.53 ? C24 OLB 403 C 1 
HETATM 12 O O25 OLB . . . R 7 -4.586 -55.136 91.66 1 115.81 ? O25 OLB 403 C 1 
HETATM 13 C C6 OLB . . . R 7 -12.262 -51.072 98.607 1 109.83 ? C6 OLB 403 C 1 
HETATM 14 C C7 OLB . . . R 7 -13.045 -52.129 99.382 1 108.08 ? C7 OLB 403 C 1 
HETATM 15 C C8 OLB . . . R 7 -13.596 -51.515 100.668 1 108.14 ? C8 OLB 403 C 1 
HETATM 16 C C9 OLB . . . R 7 -12.479 -51.422 101.707 1 108.27 ? C9 OLB 403 C 1 
HETATM 17 C C10 OLB . . . R 7 -12.758 -51.198 102.977 1 106.34 ? C10 OLB 403 C 1 
HETATM 18 C C11 OLB . . . R 7 -14.205 -51.027 103.439 1 104.58 ? C11 OLB 403 C 1 
HETATM 19 C C12 OLB . . . R 7 -14.292 -51.22 104.953 1 103.29 ? C12 OLB 403 C 1 
HETATM 20 C C13 OLB . . . R 7 -14.465 -49.865 105.639 1 101.44 ? C13 OLB 403 C 1 
HETATM 21 C C14 OLB . . . R 7 -14.797 -50.068 107.117 1 97.78 ? C14 OLB 403 C 1 
HETATM 22 C C15 OLB . . . R 7 -13.513 -50.064 107.945 1 93.68 ? C15 OLB 403 C 1 
HETATM 23 C C16 OLB . . . R 7 -13.732 -49.263 109.228 1 89.75 ? C16 OLB 403 C 1 
HETATM 24 C C17 OLB . . . R 7 -14.731 -49.986 110.13 1 86.54 ? C17 OLB 403 C 1 
HETATM 25 C C18 OLB . . . R 7 -14.029 -51.125 110.868 1 83.74 ? C18 OLB 403 C 1 
#
_model_server_stats.io_time_ms              46 
_model_server_stats.parse_time_ms           37 
_model_server_stats.create_model_time_ms    39 
_model_server_stats.query_time_ms           328 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           25 
#