data_6KSL # _model_server_result.job_id 1JSg0K2k88wfM4phuUDy3A _model_server_result.datetime_utc '2025-01-11 07:01:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ksl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":404}' # _entry.id 6KSL # _exptl.entry_id 6KSL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 88.105 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'butanoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6KSL _cell.length_a 164.209 _cell.length_b 164.209 _cell.length_c 233.053 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KSL _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 78 A ASP 64 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.808 ? metalc ? metalc2 A OD2 ASP 78 A ASP 64 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? metalc ? metalc3 A NE2 HIS 98 A HIS 84 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? metalc ? metalc4 A NE2 HIS 104 A HIS 90 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.759 ? metalc ? metalc5 A OD2 ASP 250 A ASP 236 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc6 A O GLY 297 A GLY 283 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc7 A OD2 ASP 362 A ASP 348 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc8 A OD1 ASP 365 A ASP 351 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc9 A OD2 ASP 365 A ASP 351 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc10 A OD2 ASP 370 A ASP 356 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? metalc ? metalc11 A OD2 ASP 373 A ASP 359 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.677 ? metalc ? metalc12 B OD1 ASP 78 B ASP 64 1_555 G ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? metalc ? metalc13 B NE2 HIS 98 B HIS 84 1_555 G ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc14 B NE2 HIS 104 B HIS 90 1_555 G ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc15 B OD2 ASP 250 B ASP 236 1_555 G ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc16 B O GLY 297 B GLY 283 1_555 H CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc17 B OD2 ASP 362 B ASP 348 1_555 H CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc18 B OD1 ASP 365 B ASP 351 1_555 H CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? metalc ? metalc19 B OD2 ASP 365 B ASP 351 1_555 H CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc20 B OD2 ASP 370 B ASP 356 1_555 H CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? metalc ? metalc21 B OD2 ASP 373 B ASP 359 1_555 H CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? # _chem_comp.formula 'C4 H8 O2' _chem_comp.formula_weight 88.105 _chem_comp.id BUA _chem_comp.mon_nstd_flag . _chem_comp.name 'butanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3 C4 BUA sing 70 n n C3 C2 BUA sing 71 n n O1 C4 BUA doub 72 n n C4 O2 BUA sing 73 n n C2 C1 BUA sing 74 n n C1 H11 BUA sing 75 n n C1 H12 BUA sing 76 n n C1 H13 BUA sing 77 n n C2 H21 BUA sing 78 n n C2 H22 BUA sing 79 n n C3 H31 BUA sing 80 n n C3 H32 BUA sing 81 n n O2 HO2 BUA sing 82 n n # _atom_sites.entry_id 6KSL _atom_sites.fract_transf_matrix[1][1] 0.00609 _atom_sites.fract_transf_matrix[1][2] 0.003516 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007032 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004291 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 401 1 ZN ZN . D 3 CA A 1 402 1 CA CA . E 4 DAO A 1 403 1 DAO DAO . F 5 BUA A 1 404 2 BUA BUA . G 2 ZN B 1 401 1 ZN ZN . H 3 CA B 1 402 1 CA CA . I 4 DAO B 1 403 2 DAO DAO . J 4 DAO B 1 404 3 DAO DAO . K 5 BUA B 1 405 1 BUA BUA . L 6 HOH A 1 501 1 HOH HOH . L 6 HOH A 2 502 8 HOH HOH . L 6 HOH A 3 503 9 HOH HOH . L 6 HOH A 4 504 6 HOH HOH . L 6 HOH A 5 505 4 HOH HOH . L 6 HOH A 6 506 11 HOH HOH . L 6 HOH A 7 507 10 HOH HOH . M 6 HOH B 1 501 12 HOH HOH . M 6 HOH B 2 502 3 HOH HOH . M 6 HOH B 3 503 7 HOH HOH . M 6 HOH B 4 504 5 HOH HOH . M 6 HOH B 5 505 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BUA . . . F 5 -78.033 40.213 0.725 1 95.87 ? C1 BUA 404 A 1 HETATM 2 C C2 BUA . . . F 5 -77.164 41.458 0.811 1 110 ? C2 BUA 404 A 1 HETATM 3 C C3 BUA . . . F 5 -75.73 41.275 0.258 1 113.24 ? C3 BUA 404 A 1 HETATM 4 C C4 BUA . . . F 5 -74.68 42.136 0.97 1 121.48 ? C4 BUA 404 A 1 HETATM 5 O O1 BUA . . . F 5 -73.565 42.377 0.443 1 119.16 ? O1 BUA 404 A 1 HETATM 6 O O2 BUA . . . F 5 -74.93 42.598 2.102 1 124.45 ? O2 BUA 404 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #