data_6KSM
#
_model_server_result.job_id            e-LfNz6joflJtW3RsJCLfQ 
_model_server_result.datetime_utc      '2025-01-11 12:39:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ksm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":402}' 
#
_entry.id    6KSM 
#
_exptl.entry_id    6KSM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6KSM 
_cell.length_a            132.51 
_cell.length_b            132.51 
_cell.length_c            248.243 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6KSM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        91 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A CB SER 130 A SER 116 1_555 E O2' DH9 . A DH9 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.392 ? 
metalc ? metalc1 A NE2 HIS 98 A HIS 84 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.821 ? 
metalc ? metalc2 A NE2 HIS 104 A HIS 90 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? 
metalc ? metalc3 A OD2 ASP 250 A ASP 236 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? 
metalc ? metalc4 A O GLY 297 A GLY 283 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? 
metalc ? metalc5 A OD2 ASP 362 A ASP 348 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? 
metalc ? metalc6 A OD1 ASP 365 A ASP 351 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? 
metalc ? metalc7 A OD2 ASP 365 A ASP 351 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? 
metalc ? metalc8 A OD2 ASP 370 A ASP 356 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.763 ? 
metalc ? metalc9 A OD2 ASP 373 A ASP 359 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? 
metalc ? metalc10 B OD1 ASP 78 B ASP 64 1_555 I ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.893 ? 
metalc ? metalc11 B NE2 HIS 98 B HIS 84 1_555 I ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
metalc ? metalc12 B NE2 HIS 104 B HIS 90 1_555 I ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? 
metalc ? metalc13 B O GLY 297 B GLY 283 1_555 J CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? 
metalc ? metalc14 B OD2 ASP 362 B ASP 348 1_555 J CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? 
metalc ? metalc15 B OD1 ASP 365 B ASP 351 1_555 J CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.721 ? 
metalc ? metalc16 B OD2 ASP 365 B ASP 351 1_555 J CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? 
metalc ? metalc17 B OD2 ASP 370 B ASP 356 1_555 J CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? 
metalc ? metalc18 B OD2 ASP 373 B ASP 359 1_555 J CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6KSM 
_atom_sites.fract_transf_matrix[1][1]    0.007547 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007547 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004028 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 401 1 ZN ZN . 
D 3 CA A 1 402 1 CA CA . 
E 4 DH9 A 1 403 1 DH9 DH9 . 
F 5 DAO A 1 404 1 DAO DAO . 
G 5 DAO A 1 405 4 DAO DAO . 
H 6 BUA A 1 406 1 BUA BUA . 
I 2 ZN B 1 401 2 ZN ZN . 
J 3 CA B 1 402 2 CA CA . 
K 4 DH9 B 1 403 2 DH9 DH9 . 
L 5 DAO B 1 404 2 DAO DAO . 
M 5 DAO B 1 405 3 DAO DAO . 
N 7 STE B 1 406 1 STE STE . 
O 6 BUA B 1 407 2 BUA BUA . 
P 8 HOH A 1 501 39 HOH HOH . 
P 8 HOH A 2 502 30 HOH HOH . 
P 8 HOH A 3 503 26 HOH HOH . 
P 8 HOH A 4 504 44 HOH HOH . 
P 8 HOH A 5 505 55 HOH HOH . 
P 8 HOH A 6 506 36 HOH HOH . 
P 8 HOH A 7 507 41 HOH HOH . 
P 8 HOH A 8 508 16 HOH HOH . 
P 8 HOH A 9 509 34 HOH HOH . 
P 8 HOH A 10 510 32 HOH HOH . 
P 8 HOH A 11 511 54 HOH HOH . 
P 8 HOH A 12 512 20 HOH HOH . 
P 8 HOH A 13 513 28 HOH HOH . 
P 8 HOH A 14 514 6 HOH HOH . 
P 8 HOH A 15 515 27 HOH HOH . 
P 8 HOH A 16 516 14 HOH HOH . 
P 8 HOH A 17 517 13 HOH HOH . 
P 8 HOH A 18 518 51 HOH HOH . 
P 8 HOH A 19 519 4 HOH HOH . 
P 8 HOH A 20 520 9 HOH HOH . 
P 8 HOH A 21 521 15 HOH HOH . 
P 8 HOH A 22 522 22 HOH HOH . 
P 8 HOH A 23 523 19 HOH HOH . 
P 8 HOH A 24 524 49 HOH HOH . 
P 8 HOH A 25 525 59 HOH HOH . 
P 8 HOH A 26 526 1 HOH HOH . 
P 8 HOH A 27 527 53 HOH HOH . 
P 8 HOH A 28 528 8 HOH HOH . 
P 8 HOH A 29 529 50 HOH HOH . 
P 8 HOH A 30 530 21 HOH HOH . 
P 8 HOH A 31 531 35 HOH HOH . 
P 8 HOH A 32 532 33 HOH HOH . 
P 8 HOH A 33 533 37 HOH HOH . 
P 8 HOH A 34 534 23 HOH HOH . 
Q 8 HOH B 1 501 48 HOH HOH . 
Q 8 HOH B 2 502 7 HOH HOH . 
Q 8 HOH B 3 503 58 HOH HOH . 
Q 8 HOH B 4 504 57 HOH HOH . 
Q 8 HOH B 5 505 29 HOH HOH . 
Q 8 HOH B 6 506 42 HOH HOH . 
Q 8 HOH B 7 507 3 HOH HOH . 
Q 8 HOH B 8 508 31 HOH HOH . 
Q 8 HOH B 9 509 25 HOH HOH . 
Q 8 HOH B 10 510 38 HOH HOH . 
Q 8 HOH B 11 511 43 HOH HOH . 
Q 8 HOH B 12 512 56 HOH HOH . 
Q 8 HOH B 13 513 2 HOH HOH . 
Q 8 HOH B 14 514 10 HOH HOH . 
Q 8 HOH B 15 515 11 HOH HOH . 
Q 8 HOH B 16 516 45 HOH HOH . 
Q 8 HOH B 17 517 17 HOH HOH . 
Q 8 HOH B 18 518 12 HOH HOH . 
Q 8 HOH B 19 519 47 HOH HOH . 
Q 8 HOH B 20 520 40 HOH HOH . 
Q 8 HOH B 21 521 18 HOH HOH . 
Q 8 HOH B 22 522 5 HOH HOH . 
Q 8 HOH B 23 523 46 HOH HOH . 
Q 8 HOH B 24 524 52 HOH HOH . 
Q 8 HOH B 25 525 24 HOH HOH . 
Q 8 HOH B 26 526 60 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               36.043 
_atom_site.Cartn_y               25.688 
_atom_site.Cartn_z               -6.15 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        75.59 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           402 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           263 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#