data_6KSM # _model_server_result.job_id dq8hwMngpZZWSteprhaVWQ _model_server_result.datetime_utc '2025-01-11 12:56:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ksm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":403}' # _entry.id 6KSM # _exptl.entry_id 6KSM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 513.75 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S,3S,5S)-5-[(N-FORMYL-L-LEUCYL)OXY]-2-HEXYL-3-HYDROXYHEXADECANOIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6KSM _cell.length_a 132.51 _cell.length_b 132.51 _cell.length_c 248.243 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KSM _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A CB SER 130 A SER 116 1_555 E O2' DH9 . A DH9 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.392 ? metalc ? metalc1 A NE2 HIS 98 A HIS 84 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.821 ? metalc ? metalc2 A NE2 HIS 104 A HIS 90 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc3 A OD2 ASP 250 A ASP 236 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? metalc ? metalc4 A O GLY 297 A GLY 283 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc5 A OD2 ASP 362 A ASP 348 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc6 A OD1 ASP 365 A ASP 351 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc7 A OD2 ASP 365 A ASP 351 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc8 A OD2 ASP 370 A ASP 356 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.763 ? metalc ? metalc9 A OD2 ASP 373 A ASP 359 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc10 B OD1 ASP 78 B ASP 64 1_555 I ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.893 ? metalc ? metalc11 B NE2 HIS 98 B HIS 84 1_555 I ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc12 B NE2 HIS 104 B HIS 90 1_555 I ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc13 B O GLY 297 B GLY 283 1_555 J CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc14 B OD2 ASP 362 B ASP 348 1_555 J CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc15 B OD1 ASP 365 B ASP 351 1_555 J CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.721 ? metalc ? metalc16 B OD2 ASP 365 B ASP 351 1_555 J CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc17 B OD2 ASP 370 B ASP 356 1_555 J CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc18 B OD2 ASP 373 B ASP 359 1_555 J CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? # _chem_comp.formula 'C29 H55 N O6' _chem_comp.formula_weight 513.75 _chem_comp.id DH9 _chem_comp.mon_nstd_flag . _chem_comp.name '(2S,3S,5S)-5-[(N-FORMYL-L-LEUCYL)OXY]-2-HEXYL-3-HYDROXYHEXADECANOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C22 C21 DH9 sing 120 n n C22 H221 DH9 sing 121 n n C22 H222 DH9 sing 122 n n C22 H223 DH9 sing 123 n n C21 C20 DH9 sing 124 n n C21 H211 DH9 sing 125 n n C21 H212 DH9 sing 126 n n C20 C19 DH9 sing 127 n n C20 H201 DH9 sing 128 n n C20 H202 DH9 sing 129 n n C19 C18 DH9 sing 130 n n C19 H191 DH9 sing 131 n n C19 H192 DH9 sing 132 n n C18 C17 DH9 sing 133 n n C18 H181 DH9 sing 134 n n C18 H182 DH9 sing 135 n n C17 C2' DH9 sing 136 n n C17 H171 DH9 sing 137 n n C17 H172 DH9 sing 138 n n C2' C3' DH9 sing 139 n n C2' C1' DH9 sing 140 n n C2' H2' DH9 sing 141 n n C1' O1' DH9 doub 142 n n C1' O2' DH9 sing 143 n n O2' HO2' DH9 sing 144 n n C3' O3' DH9 sing 145 n n C3' C4' DH9 sing 146 n n C3' H3' DH9 sing 147 n n O3' HO3' DH9 sing 148 n n C4' C5' DH9 sing 149 n n C4' "H4'1" DH9 sing 150 n n C4' "H4'2" DH9 sing 151 n n C5' O4' DH9 sing 152 n n C5' C6' DH9 sing 153 n n C5' H5' DH9 sing 154 n n O4' C23 DH9 sing 155 n n C23 C24 DH9 sing 156 n n C23 O5' DH9 doub 157 n n C24 N1' DH9 sing 158 n n C24 C26 DH9 sing 159 n n C24 H24 DH9 sing 160 n n C26 C27 DH9 sing 161 n n C26 H261 DH9 sing 162 n n C26 H262 DH9 sing 163 n n C27 C28 DH9 sing 164 n n C27 C29 DH9 sing 165 n n C27 H27 DH9 sing 166 n n C28 H281 DH9 sing 167 n n C28 H282 DH9 sing 168 n n C28 H283 DH9 sing 169 n n C29 H291 DH9 sing 170 n n C29 H292 DH9 sing 171 n n C29 H293 DH9 sing 172 n n N1' C25 DH9 sing 173 n n N1' HN1' DH9 sing 174 n n C25 O6' DH9 doub 175 n n C25 H25 DH9 sing 176 n n C6' C7' DH9 sing 177 n n C6' "H6'1" DH9 sing 178 n n C6' "H6'2" DH9 sing 179 n n C7' C8' DH9 sing 180 n n C7' "H7'1" DH9 sing 181 n n C7' "H7'2" DH9 sing 182 n n C8' C9' DH9 sing 183 n n C8' "H8'1" DH9 sing 184 n n C8' "H8'2" DH9 sing 185 n n C9' C10 DH9 sing 186 n n C9' "H9'1" DH9 sing 187 n n C9' "H9'2" DH9 sing 188 n n C10 C11 DH9 sing 189 n n C10 H101 DH9 sing 190 n n C10 H102 DH9 sing 191 n n C11 C12 DH9 sing 192 n n C11 H111 DH9 sing 193 n n C11 H112 DH9 sing 194 n n C12 C13 DH9 sing 195 n n C12 H121 DH9 sing 196 n n C12 H122 DH9 sing 197 n n C13 C14 DH9 sing 198 n n C13 H131 DH9 sing 199 n n C13 H132 DH9 sing 200 n n C14 C15 DH9 sing 201 n n C14 H141 DH9 sing 202 n n C14 H142 DH9 sing 203 n n C15 C16 DH9 sing 204 n n C15 H151 DH9 sing 205 n n C15 H152 DH9 sing 206 n n C16 H161 DH9 sing 207 n n C16 H162 DH9 sing 208 n n C16 H163 DH9 sing 209 n n # _atom_sites.entry_id 6KSM _atom_sites.fract_transf_matrix[1][1] 0.007547 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007547 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004028 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 401 1 ZN ZN . D 3 CA A 1 402 1 CA CA . E 4 DH9 A 1 403 1 DH9 DH9 . F 5 DAO A 1 404 1 DAO DAO . G 5 DAO A 1 405 4 DAO DAO . H 6 BUA A 1 406 1 BUA BUA . I 2 ZN B 1 401 2 ZN ZN . J 3 CA B 1 402 2 CA CA . K 4 DH9 B 1 403 2 DH9 DH9 . L 5 DAO B 1 404 2 DAO DAO . M 5 DAO B 1 405 3 DAO DAO . N 7 STE B 1 406 1 STE STE . O 6 BUA B 1 407 2 BUA BUA . P 8 HOH A 1 501 39 HOH HOH . P 8 HOH A 2 502 30 HOH HOH . P 8 HOH A 3 503 26 HOH HOH . P 8 HOH A 4 504 44 HOH HOH . P 8 HOH A 5 505 55 HOH HOH . P 8 HOH A 6 506 36 HOH HOH . P 8 HOH A 7 507 41 HOH HOH . P 8 HOH A 8 508 16 HOH HOH . P 8 HOH A 9 509 34 HOH HOH . P 8 HOH A 10 510 32 HOH HOH . P 8 HOH A 11 511 54 HOH HOH . P 8 HOH A 12 512 20 HOH HOH . P 8 HOH A 13 513 28 HOH HOH . P 8 HOH A 14 514 6 HOH HOH . P 8 HOH A 15 515 27 HOH HOH . P 8 HOH A 16 516 14 HOH HOH . P 8 HOH A 17 517 13 HOH HOH . P 8 HOH A 18 518 51 HOH HOH . P 8 HOH A 19 519 4 HOH HOH . P 8 HOH A 20 520 9 HOH HOH . P 8 HOH A 21 521 15 HOH HOH . P 8 HOH A 22 522 22 HOH HOH . P 8 HOH A 23 523 19 HOH HOH . P 8 HOH A 24 524 49 HOH HOH . P 8 HOH A 25 525 59 HOH HOH . P 8 HOH A 26 526 1 HOH HOH . P 8 HOH A 27 527 53 HOH HOH . P 8 HOH A 28 528 8 HOH HOH . P 8 HOH A 29 529 50 HOH HOH . P 8 HOH A 30 530 21 HOH HOH . P 8 HOH A 31 531 35 HOH HOH . P 8 HOH A 32 532 33 HOH HOH . P 8 HOH A 33 533 37 HOH HOH . P 8 HOH A 34 534 23 HOH HOH . Q 8 HOH B 1 501 48 HOH HOH . Q 8 HOH B 2 502 7 HOH HOH . Q 8 HOH B 3 503 58 HOH HOH . Q 8 HOH B 4 504 57 HOH HOH . Q 8 HOH B 5 505 29 HOH HOH . Q 8 HOH B 6 506 42 HOH HOH . Q 8 HOH B 7 507 3 HOH HOH . Q 8 HOH B 8 508 31 HOH HOH . Q 8 HOH B 9 509 25 HOH HOH . Q 8 HOH B 10 510 38 HOH HOH . Q 8 HOH B 11 511 43 HOH HOH . Q 8 HOH B 12 512 56 HOH HOH . Q 8 HOH B 13 513 2 HOH HOH . Q 8 HOH B 14 514 10 HOH HOH . Q 8 HOH B 15 515 11 HOH HOH . Q 8 HOH B 16 516 45 HOH HOH . Q 8 HOH B 17 517 17 HOH HOH . Q 8 HOH B 18 518 12 HOH HOH . Q 8 HOH B 19 519 47 HOH HOH . Q 8 HOH B 20 520 40 HOH HOH . Q 8 HOH B 21 521 18 HOH HOH . Q 8 HOH B 22 522 5 HOH HOH . Q 8 HOH B 23 523 46 HOH HOH . Q 8 HOH B 24 524 52 HOH HOH . Q 8 HOH B 25 525 24 HOH HOH . Q 8 HOH B 26 526 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C22 DH9 . . . K 4 57.601 26.187 -25.048 1 62.93 ? C22 DH9 403 B 1 HETATM 2 C C21 DH9 . . . K 4 58.184 25.581 -23.803 1 65.92 ? C21 DH9 403 B 1 HETATM 3 C C20 DH9 . . . K 4 59.552 26.2 -23.542 1 59.3 ? C20 DH9 403 B 1 HETATM 4 C C19 DH9 . . . K 4 59.504 27.07 -22.326 1 55.12 ? C19 DH9 403 B 1 HETATM 5 C C18 DH9 . . . K 4 60.699 27.962 -22.321 1 58.51 ? C18 DH9 403 B 1 HETATM 6 C C17 DH9 . . . K 4 60.456 29.132 -21.415 1 48.79 ? C17 DH9 403 B 1 HETATM 7 C C2' DH9 . . . K 4 59.836 30.26 -22.231 1 59.4 ? C2' DH9 403 B 1 HETATM 8 C C1' DH9 . . . K 4 60.652 31.512 -22.096 1 62.36 ? C1' DH9 403 B 1 HETATM 9 O O1' DH9 . . . K 4 60.792 32.405 -22.991 1 58.21 ? O1' DH9 403 B 1 HETATM 10 O O2' DH9 . . . K 4 61.174 31.633 -20.981 1 65.15 ? O2' DH9 403 B 1 HETATM 11 C C3' DH9 . . . K 4 58.445 30.476 -21.66 1 56.4 ? C3' DH9 403 B 1 HETATM 12 O O3' DH9 . . . K 4 58.222 31.859 -21.431 1 52.07 ? O3' DH9 403 B 1 HETATM 13 C C4' DH9 . . . K 4 57.39 29.878 -22.562 1 61.93 ? C4' DH9 403 B 1 HETATM 14 C C5' DH9 . . . K 4 56.022 29.984 -21.94 1 68.95 ? C5' DH9 403 B 1 HETATM 15 O O4' DH9 . . . K 4 55.698 31.27 -22.381 1 64.74 ? O4' DH9 403 B 1 HETATM 16 C C23 DH9 . . . K 4 55.14 32.236 -21.508 1 64.56 ? C23 DH9 403 B 1 HETATM 17 O O5' DH9 . . . K 4 55.081 32.018 -20.32 1 68.3 ? O5' DH9 403 B 1 HETATM 18 C C24 DH9 . . . K 4 54.655 33.474 -22.22 1 68.37 ? C24 DH9 403 B 1 HETATM 19 C C26 DH9 . . . K 4 55.672 34.583 -22.255 1 64.81 ? C26 DH9 403 B 1 HETATM 20 C C27 DH9 . . . K 4 56.85 34.314 -21.407 1 71.08 ? C27 DH9 403 B 1 HETATM 21 C C28 DH9 . . . K 4 58.077 34.918 -22.047 1 88.36 ? C28 DH9 403 B 1 HETATM 22 C C29 DH9 . . . K 4 56.569 34.972 -20.087 1 94.44 ? C29 DH9 403 B 1 HETATM 23 N N1' DH9 . . . K 4 53.379 34.029 -21.808 1 76.43 ? N1' DH9 403 B 1 HETATM 24 C C25 DH9 . . . K 4 52.739 34.95 -22.524 1 70.22 ? C25 DH9 403 B 1 HETATM 25 O O6' DH9 . . . K 4 52.908 36.104 -22.166 1 83.97 ? O6' DH9 403 B 1 HETATM 26 C C6' DH9 . . . K 4 55.164 28.897 -22.578 1 73.43 ? C6' DH9 403 B 1 HETATM 27 C C7' DH9 . . . K 4 53.705 29.289 -22.724 1 80.48 ? C7' DH9 403 B 1 HETATM 28 C C8' DH9 . . . K 4 52.776 28.464 -21.848 1 89.13 ? C8' DH9 403 B 1 HETATM 29 C C9' DH9 . . . K 4 51.539 29.282 -21.472 1 95.33 ? C9' DH9 403 B 1 HETATM 30 C C10 DH9 . . . K 4 51.801 30.466 -20.524 1 90.65 ? C10 DH9 403 B 1 HETATM 31 C C11 DH9 . . . K 4 50.528 31.305 -20.421 1 88.06 ? C11 DH9 403 B 1 HETATM 32 C C12 DH9 . . . K 4 50.687 32.624 -19.667 1 87.47 ? C12 DH9 403 B 1 HETATM 33 C C13 DH9 . . . K 4 49.574 33.597 -20.09 1 99.12 ? C13 DH9 403 B 1 HETATM 34 C C14 DH9 . . . K 4 49.196 34.692 -19.08 1 92.97 ? C14 DH9 403 B 1 HETATM 35 C C15 DH9 . . . K 4 47.845 35.312 -19.457 1 92.31 ? C15 DH9 403 B 1 HETATM 36 C C16 DH9 . . . K 4 47.273 36.282 -18.436 1 81.8 ? C16 DH9 403 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 34 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 36 #