data_6KSN
#
_model_server_result.job_id            YfiLUF1TOOM7UZw3ZnYjeQ 
_model_server_result.datetime_utc      '2025-03-04 08:24:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ksn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":206}' 
#
_entry.id    6KSN 
#
_exptl.entry_id    6KSN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    18 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6KSN 
_cell.length_a            106.88 
_cell.length_b            106.88 
_cell.length_c            70.58 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6KSN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    'P 32 2"' 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,X 1 1 
B,L,M,N,O,P,Q,R,S,T,U,V,W,Y 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
? 3 Q N N 
? 3 R N N 
? 3 S N N 
? 3 T N N 
? 3 U N N 
? 3 V N N 
? 3 W N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 26 A CYS 26 1_555 A SG CYS 103 A CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf2 B SG CYS 26 B CYS 26 1_555 B SG CYS 103 B CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
metalc ? metalc1 A SG CYS 40 A CYS 40 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? 
metalc ? metalc2 A OD1 ASP 106 A ASP 106 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.934 ? 
metalc ? metalc3 A NE2 HIS 109 A HIS 109 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? 
metalc ? metalc4 A ND1 HIS 116 A HIS 116 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? 
metalc ? metalc5 B O SER 34 B SER 34 1_555 L NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc6 B O SER 37 B SER 37 1_555 L NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc7 B SG CYS 40 B CYS 40 1_555 M ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? 
metalc ? metalc8 B OD1 ASP 106 B ASP 106 1_555 M ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.899 ? 
metalc ? metalc9 B NE2 HIS 109 B HIS 109 1_555 M ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? 
metalc ? metalc10 B ND1 HIS 116 B HIS 116 1_555 M ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
metalc ? metalc11 L NA NA . B NA 201 1_555 N O1 EDO . B EDO 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? 
metalc ? metalc12 L NA NA . B NA 201 1_555 N O2 EDO . B EDO 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? 
metalc ? metalc13 L NA NA . B NA 201 1_555 Y O HOH . B HOH 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? 
metalc ? metalc14 L NA NA . B NA 201 1_555 Y O HOH . B HOH 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     6KSN 
_atom_sites.fract_transf_matrix[1][1]    0.009356 
_atom_sites.fract_transf_matrix[1][2]    0.005402 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010804 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014168 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 201 2 ZN ZN . 
D 3 EDO A 1 202 1 EDO EDO . 
E 3 EDO A 1 203 2 EDO EDO . 
F 3 EDO A 1 204 3 EDO EDO . 
G 3 EDO A 1 205 5 EDO EDO . 
H 3 EDO A 1 206 6 EDO EDO . 
I 3 EDO A 1 207 7 EDO EDO . 
J 3 EDO A 1 208 9 EDO EDO . 
K 3 EDO A 1 209 13 EDO EDO . 
L 4 NA B 1 201 201 NA NA . 
M 2 ZN B 1 202 1 ZN ZN . 
N 3 EDO B 1 203 4 EDO EDO . 
O 3 EDO B 1 204 8 EDO EDO . 
P 3 EDO B 1 205 10 EDO EDO . 
Q 3 EDO B 1 206 11 EDO EDO . 
R 3 EDO B 1 207 12 EDO EDO . 
S 3 EDO B 1 208 14 EDO EDO . 
T 3 EDO B 1 209 15 EDO EDO . 
U 3 EDO B 1 210 16 EDO EDO . 
V 3 EDO B 1 211 17 EDO EDO . 
W 3 EDO B 1 212 18 EDO EDO . 
X 5 HOH A 1 301 7 HOH HOH . 
X 5 HOH A 2 302 13 HOH HOH . 
X 5 HOH A 3 303 31 HOH HOH . 
X 5 HOH A 4 304 46 HOH HOH . 
X 5 HOH A 5 305 118 HOH HOH . 
X 5 HOH A 6 306 85 HOH HOH . 
X 5 HOH A 7 307 47 HOH HOH . 
X 5 HOH A 8 308 50 HOH HOH . 
X 5 HOH A 9 309 24 HOH HOH . 
X 5 HOH A 10 310 54 HOH HOH . 
X 5 HOH A 11 311 35 HOH HOH . 
X 5 HOH A 12 312 56 HOH HOH . 
X 5 HOH A 13 313 101 HOH HOH . 
X 5 HOH A 14 314 90 HOH HOH . 
X 5 HOH A 15 315 36 HOH HOH . 
X 5 HOH A 16 316 39 HOH HOH . 
X 5 HOH A 17 317 63 HOH HOH . 
X 5 HOH A 18 318 5 HOH HOH . 
X 5 HOH A 19 319 26 HOH HOH . 
X 5 HOH A 20 320 94 HOH HOH . 
X 5 HOH A 21 321 52 HOH HOH . 
X 5 HOH A 22 322 42 HOH HOH . 
X 5 HOH A 23 323 2 HOH HOH . 
X 5 HOH A 24 324 121 HOH HOH . 
X 5 HOH A 25 325 33 HOH HOH . 
X 5 HOH A 26 326 112 HOH HOH . 
X 5 HOH A 27 327 40 HOH HOH . 
X 5 HOH A 28 328 108 HOH HOH . 
X 5 HOH A 29 329 8 HOH HOH . 
X 5 HOH A 30 330 15 HOH HOH . 
X 5 HOH A 31 331 3 HOH HOH . 
X 5 HOH A 32 332 117 HOH HOH . 
X 5 HOH A 33 333 6 HOH HOH . 
X 5 HOH A 34 334 87 HOH HOH . 
X 5 HOH A 35 335 9 HOH HOH . 
X 5 HOH A 36 336 21 HOH HOH . 
X 5 HOH A 37 337 28 HOH HOH . 
X 5 HOH A 38 338 111 HOH HOH . 
X 5 HOH A 39 339 99 HOH HOH . 
X 5 HOH A 40 340 71 HOH HOH . 
X 5 HOH A 41 341 92 HOH HOH . 
X 5 HOH A 42 342 61 HOH HOH . 
X 5 HOH A 43 343 67 HOH HOH . 
X 5 HOH A 44 344 37 HOH HOH . 
X 5 HOH A 45 345 79 HOH HOH . 
X 5 HOH A 46 346 22 HOH HOH . 
X 5 HOH A 47 347 51 HOH HOH . 
X 5 HOH A 48 348 76 HOH HOH . 
X 5 HOH A 49 349 48 HOH HOH . 
X 5 HOH A 50 350 100 HOH HOH . 
X 5 HOH A 51 351 102 HOH HOH . 
X 5 HOH A 52 352 97 HOH HOH . 
X 5 HOH A 53 353 107 HOH HOH . 
X 5 HOH A 54 354 66 HOH HOH . 
X 5 HOH A 55 355 64 HOH HOH . 
X 5 HOH A 56 356 122 HOH HOH . 
X 5 HOH A 57 357 96 HOH HOH . 
X 5 HOH A 58 358 106 HOH HOH . 
Y 5 HOH B 1 301 58 HOH HOH . 
Y 5 HOH B 2 302 84 HOH HOH . 
Y 5 HOH B 3 303 53 HOH HOH . 
Y 5 HOH B 4 304 27 HOH HOH . 
Y 5 HOH B 5 305 113 HOH HOH . 
Y 5 HOH B 6 306 41 HOH HOH . 
Y 5 HOH B 7 307 86 HOH HOH . 
Y 5 HOH B 8 308 43 HOH HOH . 
Y 5 HOH B 9 309 75 HOH HOH . 
Y 5 HOH B 10 310 20 HOH HOH . 
Y 5 HOH B 11 311 91 HOH HOH . 
Y 5 HOH B 12 312 32 HOH HOH . 
Y 5 HOH B 13 313 77 HOH HOH . 
Y 5 HOH B 14 314 49 HOH HOH . 
Y 5 HOH B 15 315 25 HOH HOH . 
Y 5 HOH B 16 316 19 HOH HOH . 
Y 5 HOH B 17 317 23 HOH HOH . 
Y 5 HOH B 18 318 74 HOH HOH . 
Y 5 HOH B 19 319 72 HOH HOH . 
Y 5 HOH B 20 320 10 HOH HOH . 
Y 5 HOH B 21 321 17 HOH HOH . 
Y 5 HOH B 22 322 59 HOH HOH . 
Y 5 HOH B 23 323 16 HOH HOH . 
Y 5 HOH B 24 324 60 HOH HOH . 
Y 5 HOH B 25 325 120 HOH HOH . 
Y 5 HOH B 26 326 82 HOH HOH . 
Y 5 HOH B 27 327 68 HOH HOH . 
Y 5 HOH B 28 328 55 HOH HOH . 
Y 5 HOH B 29 329 80 HOH HOH . 
Y 5 HOH B 30 330 34 HOH HOH . 
Y 5 HOH B 31 331 29 HOH HOH . 
Y 5 HOH B 32 332 70 HOH HOH . 
Y 5 HOH B 33 333 114 HOH HOH . 
Y 5 HOH B 34 334 11 HOH HOH . 
Y 5 HOH B 35 335 93 HOH HOH . 
Y 5 HOH B 36 336 110 HOH HOH . 
Y 5 HOH B 37 337 109 HOH HOH . 
Y 5 HOH B 38 338 18 HOH HOH . 
Y 5 HOH B 39 339 12 HOH HOH . 
Y 5 HOH B 40 340 44 HOH HOH . 
Y 5 HOH B 41 341 69 HOH HOH . 
Y 5 HOH B 42 342 4 HOH HOH . 
Y 5 HOH B 43 343 1 HOH HOH . 
Y 5 HOH B 44 344 57 HOH HOH . 
Y 5 HOH B 45 345 38 HOH HOH . 
Y 5 HOH B 46 346 95 HOH HOH . 
Y 5 HOH B 47 347 30 HOH HOH . 
Y 5 HOH B 48 348 45 HOH HOH . 
Y 5 HOH B 49 349 103 HOH HOH . 
Y 5 HOH B 50 350 83 HOH HOH . 
Y 5 HOH B 51 351 105 HOH HOH . 
Y 5 HOH B 52 352 65 HOH HOH . 
Y 5 HOH B 53 353 81 HOH HOH . 
Y 5 HOH B 54 354 104 HOH HOH . 
Y 5 HOH B 55 355 62 HOH HOH . 
Y 5 HOH B 56 356 116 HOH HOH . 
Y 5 HOH B 57 357 89 HOH HOH . 
Y 5 HOH B 58 358 88 HOH HOH . 
Y 5 HOH B 59 359 98 HOH HOH . 
Y 5 HOH B 60 360 119 HOH HOH . 
Y 5 HOH B 61 361 73 HOH HOH . 
Y 5 HOH B 62 362 78 HOH HOH . 
Y 5 HOH B 63 363 115 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . H 3 8.355 -34.629 -7.224 0.75 69.51 ? C1 EDO 206 A 1 
HETATM 2 O O1 EDO . . . H 3 8.858 -35.821 -7.821 0.75 71.44 ? O1 EDO 206 A 1 
HETATM 3 C C2 EDO . . . H 3 9.515 -33.952 -6.515 0.75 72.62 ? C2 EDO 206 A 1 
HETATM 4 O O2 EDO . . . H 3 9.256 -32.548 -6.452 0.75 83.49 ? O2 EDO 206 A 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          17 
_model_server_stats.element_count           4 
#