data_6KTB # _model_server_result.job_id RaDBuawnae_nTKJcMFMp4A _model_server_result.datetime_utc '2024-11-24 21:30:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ktb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":201}' # _entry.id 6KTB # _exptl.entry_id 6KTB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6KTB _cell.length_a 39.528 _cell.length_b 89.37 _cell.length_c 109.945 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KTB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 99 A GLU 99 1_555 C MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.788 ? metalc ? metalc2 C MG MG . A MG 201 1_555 I O HOH . A HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc3 C MG MG . A MG 201 1_555 I O HOH . A HOH 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.924 ? metalc ? metalc4 B OD1 ASP 8 B ASP 8 1_555 H MN MN . B MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.581 ? metalc ? metalc5 B CD GLU 11 B GLU 11 1_555 G MN MN . B MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.793 ? metalc ? metalc6 B OE1 GLU 11 B GLU 11 1_555 G MN MN . B MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? metalc ? metalc7 B OE2 GLU 11 B GLU 11 1_555 G MN MN . B MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc8 B ND1 HIS 77 B HIS 77 1_555 G MN MN . B MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? metalc ? metalc9 B OE1 GLU 102 B GLU 102 1_555 G MN MN . B MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc10 B OE2 GLU 102 B GLU 102 1_555 G MN MN . B MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? metalc ? metalc11 B OE2 GLU 102 B GLU 102 1_555 H MN MN . B MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc12 B NE2 HIS 103 B HIS 103 1_555 H MN MN . B MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc13 G MN MN . B MN 202 1_555 J O HOH . B HOH 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc14 H MN MN . B MN 203 1_555 J O HOH . B HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 247 n n P O2 PO4 sing 248 n n P O3 PO4 sing 249 n n P O4 PO4 sing 250 n n # _atom_sites.entry_id 6KTB _atom_sites.fract_transf_matrix[1][1] 0.025299 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011189 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009095 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 201 1 MG MG . D 3 PO4 A 1 202 2 PO4 PO4 . E 3 PO4 A 1 203 3 PO4 PO4 . F 3 PO4 B 1 201 1 PO4 PO4 . G 4 MN B 1 202 1 MN MN . H 4 MN B 1 203 2 MN MN . I 5 HOH A 1 301 28 HOH HOH . I 5 HOH A 2 302 83 HOH HOH . I 5 HOH A 3 303 38 HOH HOH . I 5 HOH A 4 304 2 HOH HOH . I 5 HOH A 5 305 75 HOH HOH . I 5 HOH A 6 306 1 HOH HOH . I 5 HOH A 7 307 8 HOH HOH . I 5 HOH A 8 308 16 HOH HOH . I 5 HOH A 9 309 41 HOH HOH . I 5 HOH A 10 310 36 HOH HOH . I 5 HOH A 11 311 46 HOH HOH . I 5 HOH A 12 312 31 HOH HOH . I 5 HOH A 13 313 14 HOH HOH . I 5 HOH A 14 314 76 HOH HOH . I 5 HOH A 15 315 77 HOH HOH . I 5 HOH A 16 316 23 HOH HOH . I 5 HOH A 17 317 44 HOH HOH . I 5 HOH A 18 318 35 HOH HOH . I 5 HOH A 19 319 19 HOH HOH . I 5 HOH A 20 320 17 HOH HOH . I 5 HOH A 21 321 5 HOH HOH . I 5 HOH A 22 322 71 HOH HOH . I 5 HOH A 23 323 30 HOH HOH . I 5 HOH A 24 324 72 HOH HOH . I 5 HOH A 25 325 81 HOH HOH . I 5 HOH A 26 326 56 HOH HOH . I 5 HOH A 27 327 65 HOH HOH . I 5 HOH A 28 328 20 HOH HOH . I 5 HOH A 29 329 11 HOH HOH . I 5 HOH A 30 330 48 HOH HOH . I 5 HOH A 31 331 59 HOH HOH . I 5 HOH A 32 332 33 HOH HOH . I 5 HOH A 33 333 43 HOH HOH . I 5 HOH A 34 334 4 HOH HOH . I 5 HOH A 35 335 39 HOH HOH . I 5 HOH A 36 336 62 HOH HOH . I 5 HOH A 37 337 3 HOH HOH . I 5 HOH A 38 338 13 HOH HOH . I 5 HOH A 39 339 18 HOH HOH . I 5 HOH A 40 340 50 HOH HOH . I 5 HOH A 41 341 82 HOH HOH . I 5 HOH A 42 342 53 HOH HOH . I 5 HOH A 43 343 21 HOH HOH . I 5 HOH A 44 344 51 HOH HOH . J 5 HOH B 1 301 70 HOH HOH . J 5 HOH B 2 302 67 HOH HOH . J 5 HOH B 3 303 47 HOH HOH . J 5 HOH B 4 304 94 HOH HOH . J 5 HOH B 5 305 29 HOH HOH . J 5 HOH B 6 306 10 HOH HOH . J 5 HOH B 7 307 37 HOH HOH . J 5 HOH B 8 308 22 HOH HOH . J 5 HOH B 9 309 9 HOH HOH . J 5 HOH B 10 310 45 HOH HOH . J 5 HOH B 11 311 95 HOH HOH . J 5 HOH B 12 312 15 HOH HOH . J 5 HOH B 13 313 60 HOH HOH . J 5 HOH B 14 314 7 HOH HOH . J 5 HOH B 15 315 34 HOH HOH . J 5 HOH B 16 316 88 HOH HOH . J 5 HOH B 17 317 40 HOH HOH . J 5 HOH B 18 318 25 HOH HOH . J 5 HOH B 19 319 91 HOH HOH . J 5 HOH B 20 320 66 HOH HOH . J 5 HOH B 21 321 27 HOH HOH . J 5 HOH B 22 322 42 HOH HOH . J 5 HOH B 23 323 64 HOH HOH . J 5 HOH B 24 324 73 HOH HOH . J 5 HOH B 25 325 86 HOH HOH . J 5 HOH B 26 326 49 HOH HOH . J 5 HOH B 27 327 89 HOH HOH . J 5 HOH B 28 328 90 HOH HOH . J 5 HOH B 29 329 52 HOH HOH . J 5 HOH B 30 330 24 HOH HOH . J 5 HOH B 31 331 6 HOH HOH . J 5 HOH B 32 332 84 HOH HOH . J 5 HOH B 33 333 54 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . F 3 -6.195 27.029 35.488 1 67.88 0 P PO4 201 B 1 HETATM 2 O O1 PO4 . . . F 3 -5.341 27.426 34.288 1 44.65 0 O1 PO4 201 B 1 HETATM 3 O O2 PO4 . . . F 3 -6.959 28.216 36.06 1 39.83 0 O2 PO4 201 B 1 HETATM 4 O O3 PO4 . . . F 3 -7.211 26.033 34.982 1 39.37 -1 O3 PO4 201 B 1 HETATM 5 O O4 PO4 . . . F 3 -5.322 26.393 36.576 1 44.27 0 O4 PO4 201 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 212 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #