data_6KTV # _model_server_result.job_id hbquQjzNKfEGXj7YdV-lsA _model_server_result.datetime_utc '2024-11-23 16:56:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ktv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":520}' # _entry.id 6KTV # _exptl.entry_id 6KTV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6KTV _cell.length_a 88.675 _cell.length_b 112.819 _cell.length_c 60.615 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KTV _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab' _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 O N N ? 6 P N N ? 6 Q N N ? 6 R N N ? 6 S N N ? 6 T N N ? 6 U N N ? 6 V N N ? 6 W N N ? 6 X N N ? 6 Y N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TYR 414 A TYR 411 1_555 A N CSS 415 A CSS 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C CSS 415 A CSS 412 1_555 A N GLY 416 A GLY 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? metalc ? metalc1 A O TRP 219 A TRP 216 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc2 A OD1 ASN 220 A ASN 217 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc3 A O THR 417 A THR 414 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc4 A O ASP 440 A ASP 437 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc5 A OD1 ASP 440 A ASP 437 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? metalc ? metalc6 C MG MG . A MG 502 1_555 IA O HOH . A HOH 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 127 n n C1 C2 EDO sing 128 n n C1 H11 EDO sing 129 n n C1 H12 EDO sing 130 n n O1 HO1 EDO sing 131 n n C2 O2 EDO sing 132 n n C2 H21 EDO sing 133 n n C2 H22 EDO sing 134 n n O2 HO2 EDO sing 135 n n # _atom_sites.entry_id 6KTV _atom_sites.fract_transf_matrix[1][1] 0.011277 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008864 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016498 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AVJ A 1 501 1 AVJ AVJ . C 3 MG A 1 502 1 MG MG . D 4 CL A 1 503 1 CL CL . E 4 CL A 1 504 2 CL CL . F 4 CL A 1 505 5 CL CL . G 4 CL A 1 506 6 CL CL . H 4 CL A 1 507 7 CL CL . I 4 CL A 1 508 8 CL CL . J 4 CL A 1 509 9 CL CL . K 4 CL A 1 510 10 CL CL . L 5 GOL A 1 511 1 GOL GOL . M 5 GOL A 1 512 2 GOL GOL . N 5 GOL A 1 513 4 GOL GOL . O 6 EDO A 1 514 1 EDO EDO . P 6 EDO A 1 515 2 EDO EDO . Q 6 EDO A 1 516 3 EDO EDO . R 6 EDO A 1 517 4 EDO EDO . S 6 EDO A 1 518 5 EDO EDO . T 6 EDO A 1 519 6 EDO EDO . U 6 EDO A 1 520 7 EDO EDO . V 6 EDO A 1 521 8 EDO EDO . W 6 EDO A 1 522 9 EDO EDO . X 6 EDO A 1 523 10 EDO EDO . Y 6 EDO A 1 524 12 EDO EDO . Z 7 PEG A 1 525 1 PEG PEG . AA 8 PG4 A 1 526 1 PG4 PG4 . BA 9 PDO A 1 527 2 PDO PDO . CA 9 PDO A 1 528 3 PDO PDO . DA 9 PDO A 1 529 4 PDO PDO . EA 10 IMD A 1 530 1 IMD IMD . FA 10 IMD A 1 531 2 IMD IMD . GA 10 IMD A 1 532 3 IMD IMD . HA 11 NI A 1 533 1 NI NI . IA 12 HOH A 1 601 82 HOH HOH . IA 12 HOH A 2 602 183 HOH HOH . IA 12 HOH A 3 603 72 HOH HOH . IA 12 HOH A 4 604 76 HOH HOH . IA 12 HOH A 5 605 194 HOH HOH . IA 12 HOH A 6 606 45 HOH HOH . IA 12 HOH A 7 607 110 HOH HOH . IA 12 HOH A 8 608 283 HOH HOH . IA 12 HOH A 9 609 34 HOH HOH . IA 12 HOH A 10 610 135 HOH HOH . IA 12 HOH A 11 611 87 HOH HOH . IA 12 HOH A 12 612 108 HOH HOH . IA 12 HOH A 13 613 3 HOH HOH . IA 12 HOH A 14 614 254 HOH HOH . IA 12 HOH A 15 615 195 HOH HOH . IA 12 HOH A 16 616 22 HOH HOH . IA 12 HOH A 17 617 28 HOH HOH . IA 12 HOH A 18 618 14 HOH HOH . IA 12 HOH A 19 619 93 HOH HOH . IA 12 HOH A 20 620 13 HOH HOH . IA 12 HOH A 21 621 121 HOH HOH . IA 12 HOH A 22 622 18 HOH HOH . IA 12 HOH A 23 623 248 HOH HOH . IA 12 HOH A 24 624 46 HOH HOH . IA 12 HOH A 25 625 9 HOH HOH . IA 12 HOH A 26 626 88 HOH HOH . IA 12 HOH A 27 627 40 HOH HOH . IA 12 HOH A 28 628 4 HOH HOH . IA 12 HOH A 29 629 70 HOH HOH . IA 12 HOH A 30 630 60 HOH HOH . IA 12 HOH A 31 631 64 HOH HOH . IA 12 HOH A 32 632 262 HOH HOH . IA 12 HOH A 33 633 20 HOH HOH . IA 12 HOH A 34 634 255 HOH HOH . IA 12 HOH A 35 635 146 HOH HOH . IA 12 HOH A 36 636 208 HOH HOH . IA 12 HOH A 37 637 48 HOH HOH . IA 12 HOH A 38 638 42 HOH HOH . IA 12 HOH A 39 639 196 HOH HOH . IA 12 HOH A 40 640 129 HOH HOH . IA 12 HOH A 41 641 2 HOH HOH . IA 12 HOH A 42 642 98 HOH HOH . IA 12 HOH A 43 643 271 HOH HOH . IA 12 HOH A 44 644 133 HOH HOH . IA 12 HOH A 45 645 85 HOH HOH . IA 12 HOH A 46 646 37 HOH HOH . IA 12 HOH A 47 647 216 HOH HOH . IA 12 HOH A 48 648 251 HOH HOH . IA 12 HOH A 49 649 59 HOH HOH . IA 12 HOH A 50 650 179 HOH HOH . IA 12 HOH A 51 651 53 HOH HOH . IA 12 HOH A 52 652 111 HOH HOH . IA 12 HOH A 53 653 132 HOH HOH . IA 12 HOH A 54 654 118 HOH HOH . IA 12 HOH A 55 655 115 HOH HOH . IA 12 HOH A 56 656 221 HOH HOH . IA 12 HOH A 57 657 6 HOH HOH . IA 12 HOH A 58 658 23 HOH HOH . IA 12 HOH A 59 659 55 HOH HOH . IA 12 HOH A 60 660 15 HOH HOH . IA 12 HOH A 61 661 11 HOH HOH . IA 12 HOH A 62 662 19 HOH HOH . IA 12 HOH A 63 663 101 HOH HOH . IA 12 HOH A 64 664 66 HOH HOH . IA 12 HOH A 65 665 44 HOH HOH . IA 12 HOH A 66 666 89 HOH HOH . IA 12 HOH A 67 667 204 HOH HOH . IA 12 HOH A 68 668 27 HOH HOH . IA 12 HOH A 69 669 281 HOH HOH . IA 12 HOH A 70 670 127 HOH HOH . IA 12 HOH A 71 671 120 HOH HOH . IA 12 HOH A 72 672 124 HOH HOH . IA 12 HOH A 73 673 152 HOH HOH . IA 12 HOH A 74 674 140 HOH HOH . IA 12 HOH A 75 675 168 HOH HOH . IA 12 HOH A 76 676 69 HOH HOH . IA 12 HOH A 77 677 24 HOH HOH . IA 12 HOH A 78 678 125 HOH HOH . IA 12 HOH A 79 679 32 HOH HOH . IA 12 HOH A 80 680 25 HOH HOH . IA 12 HOH A 81 681 17 HOH HOH . IA 12 HOH A 82 682 56 HOH HOH . IA 12 HOH A 83 683 35 HOH HOH . IA 12 HOH A 84 684 16 HOH HOH . IA 12 HOH A 85 685 7 HOH HOH . IA 12 HOH A 86 686 86 HOH HOH . IA 12 HOH A 87 687 96 HOH HOH . IA 12 HOH A 88 688 38 HOH HOH . IA 12 HOH A 89 689 68 HOH HOH . IA 12 HOH A 90 690 71 HOH HOH . IA 12 HOH A 91 691 178 HOH HOH . IA 12 HOH A 92 692 49 HOH HOH . IA 12 HOH A 93 693 1 HOH HOH . IA 12 HOH A 94 694 175 HOH HOH . IA 12 HOH A 95 695 250 HOH HOH . IA 12 HOH A 96 696 123 HOH HOH . IA 12 HOH A 97 697 206 HOH HOH . IA 12 HOH A 98 698 102 HOH HOH . IA 12 HOH A 99 699 75 HOH HOH . IA 12 HOH A 100 700 10 HOH HOH . IA 12 HOH A 101 701 74 HOH HOH . IA 12 HOH A 102 702 134 HOH HOH . IA 12 HOH A 103 703 29 HOH HOH . IA 12 HOH A 104 704 8 HOH HOH . IA 12 HOH A 105 705 52 HOH HOH . IA 12 HOH A 106 706 79 HOH HOH . IA 12 HOH A 107 707 106 HOH HOH . IA 12 HOH A 108 708 211 HOH HOH . IA 12 HOH A 109 709 5 HOH HOH . IA 12 HOH A 110 710 12 HOH HOH . IA 12 HOH A 111 711 130 HOH HOH . IA 12 HOH A 112 712 176 HOH HOH . IA 12 HOH A 113 713 224 HOH HOH . IA 12 HOH A 114 714 83 HOH HOH . IA 12 HOH A 115 715 41 HOH HOH . IA 12 HOH A 116 716 21 HOH HOH . IA 12 HOH A 117 717 94 HOH HOH . IA 12 HOH A 118 718 215 HOH HOH . IA 12 HOH A 119 719 209 HOH HOH . IA 12 HOH A 120 720 143 HOH HOH . IA 12 HOH A 121 721 39 HOH HOH . IA 12 HOH A 122 722 151 HOH HOH . IA 12 HOH A 123 723 212 HOH HOH . IA 12 HOH A 124 724 109 HOH HOH . IA 12 HOH A 125 725 191 HOH HOH . IA 12 HOH A 126 726 62 HOH HOH . IA 12 HOH A 127 727 26 HOH HOH . IA 12 HOH A 128 728 100 HOH HOH . IA 12 HOH A 129 729 141 HOH HOH . IA 12 HOH A 130 730 30 HOH HOH . IA 12 HOH A 131 731 51 HOH HOH . IA 12 HOH A 132 732 99 HOH HOH . IA 12 HOH A 133 733 164 HOH HOH . IA 12 HOH A 134 734 190 HOH HOH . IA 12 HOH A 135 735 63 HOH HOH . IA 12 HOH A 136 736 162 HOH HOH . IA 12 HOH A 137 737 78 HOH HOH . IA 12 HOH A 138 738 90 HOH HOH . IA 12 HOH A 139 739 286 HOH HOH . IA 12 HOH A 140 740 97 HOH HOH . IA 12 HOH A 141 741 43 HOH HOH . IA 12 HOH A 142 742 54 HOH HOH . IA 12 HOH A 143 743 31 HOH HOH . IA 12 HOH A 144 744 67 HOH HOH . IA 12 HOH A 145 745 47 HOH HOH . IA 12 HOH A 146 746 112 HOH HOH . IA 12 HOH A 147 747 80 HOH HOH . IA 12 HOH A 148 748 144 HOH HOH . IA 12 HOH A 149 749 36 HOH HOH . IA 12 HOH A 150 750 107 HOH HOH . IA 12 HOH A 151 751 119 HOH HOH . IA 12 HOH A 152 752 91 HOH HOH . IA 12 HOH A 153 753 136 HOH HOH . IA 12 HOH A 154 754 104 HOH HOH . IA 12 HOH A 155 755 150 HOH HOH . IA 12 HOH A 156 756 237 HOH HOH . IA 12 HOH A 157 757 230 HOH HOH . IA 12 HOH A 158 758 57 HOH HOH . IA 12 HOH A 159 759 61 HOH HOH . IA 12 HOH A 160 760 122 HOH HOH . IA 12 HOH A 161 761 92 HOH HOH . IA 12 HOH A 162 762 131 HOH HOH . IA 12 HOH A 163 763 292 HOH HOH . IA 12 HOH A 164 764 50 HOH HOH . IA 12 HOH A 165 765 84 HOH HOH . IA 12 HOH A 166 766 293 HOH HOH . IA 12 HOH A 167 767 202 HOH HOH . IA 12 HOH A 168 768 166 HOH HOH . IA 12 HOH A 169 769 113 HOH HOH . IA 12 HOH A 170 770 155 HOH HOH . IA 12 HOH A 171 771 95 HOH HOH . IA 12 HOH A 172 772 73 HOH HOH . IA 12 HOH A 173 773 186 HOH HOH . IA 12 HOH A 174 774 58 HOH HOH . IA 12 HOH A 175 775 149 HOH HOH . IA 12 HOH A 176 776 185 HOH HOH . IA 12 HOH A 177 777 282 HOH HOH . IA 12 HOH A 178 778 81 HOH HOH . IA 12 HOH A 179 779 153 HOH HOH . IA 12 HOH A 180 780 227 HOH HOH . IA 12 HOH A 181 781 300 HOH HOH . IA 12 HOH A 182 782 242 HOH HOH . IA 12 HOH A 183 783 294 HOH HOH . IA 12 HOH A 184 784 223 HOH HOH . IA 12 HOH A 185 785 117 HOH HOH . IA 12 HOH A 186 786 219 HOH HOH . IA 12 HOH A 187 787 184 HOH HOH . IA 12 HOH A 188 788 210 HOH HOH . IA 12 HOH A 189 789 116 HOH HOH . IA 12 HOH A 190 790 192 HOH HOH . IA 12 HOH A 191 791 105 HOH HOH . IA 12 HOH A 192 792 261 HOH HOH . IA 12 HOH A 193 793 201 HOH HOH . IA 12 HOH A 194 794 252 HOH HOH . IA 12 HOH A 195 795 249 HOH HOH . IA 12 HOH A 196 796 285 HOH HOH . IA 12 HOH A 197 797 138 HOH HOH . IA 12 HOH A 198 798 241 HOH HOH . IA 12 HOH A 199 799 181 HOH HOH . IA 12 HOH A 200 800 258 HOH HOH . IA 12 HOH A 201 801 290 HOH HOH . IA 12 HOH A 202 802 174 HOH HOH . IA 12 HOH A 203 803 207 HOH HOH . IA 12 HOH A 204 804 295 HOH HOH . IA 12 HOH A 205 805 222 HOH HOH . IA 12 HOH A 206 806 297 HOH HOH . IA 12 HOH A 207 807 296 HOH HOH . IA 12 HOH A 208 808 279 HOH HOH . IA 12 HOH A 209 809 114 HOH HOH . IA 12 HOH A 210 810 205 HOH HOH . IA 12 HOH A 211 811 193 HOH HOH . IA 12 HOH A 212 812 177 HOH HOH . IA 12 HOH A 213 813 299 HOH HOH . IA 12 HOH A 214 814 187 HOH HOH . IA 12 HOH A 215 815 273 HOH HOH . IA 12 HOH A 216 816 275 HOH HOH . IA 12 HOH A 217 817 171 HOH HOH . IA 12 HOH A 218 818 235 HOH HOH . IA 12 HOH A 219 819 188 HOH HOH . IA 12 HOH A 220 820 240 HOH HOH . IA 12 HOH A 221 821 298 HOH HOH . IA 12 HOH A 222 822 289 HOH HOH . IA 12 HOH A 223 823 232 HOH HOH . IA 12 HOH A 224 824 156 HOH HOH . IA 12 HOH A 225 825 103 HOH HOH . IA 12 HOH A 226 826 142 HOH HOH . IA 12 HOH A 227 827 126 HOH HOH . IA 12 HOH A 228 828 137 HOH HOH . IA 12 HOH A 229 829 161 HOH HOH . IA 12 HOH A 230 830 158 HOH HOH . IA 12 HOH A 231 831 213 HOH HOH . IA 12 HOH A 232 832 139 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . U 6 -0.488 149.748 51.745 1 43.08 ? C1 EDO 520 A 1 HETATM 2 O O1 EDO . . . U 6 -1.489 149.516 52.745 1 61.27 ? O1 EDO 520 A 1 HETATM 3 C C2 EDO . . . U 6 0.017 151.182 51.847 1 45.22 ? C2 EDO 520 A 1 HETATM 4 O O2 EDO . . . U 6 1.036 151.398 50.864 1 47.85 ? O2 EDO 520 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 354 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #