data_6KUW # _model_server_result.job_id VI3BfeYyWRSuEYvDTL0XtQ _model_server_result.datetime_utc '2024-10-20 20:46:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kuw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1204}' # _entry.id 6KUW # _exptl.entry_id 6KUW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6KUW _cell.length_a 74.48 _cell.length_b 78.74 _cell.length_c 190.45 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KUW _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 N N N ? 4 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 96 A CYS 124 1_555 A SG CYS 174 A CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 A SG CYS 446 A CYS 408 1_555 A SG CYS 450 A CYS 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 B SG CYS 96 B CYS 124 1_555 B SG CYS 174 B CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf4 B SG CYS 446 B CYS 408 1_555 B SG CYS 450 B CYS 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 423 n n C10 C9 OLC doub 424 n n C10 C11 OLC sing 425 n n C9 C8 OLC sing 426 n n C17 C16 OLC sing 427 z n C11 C12 OLC sing 428 n n C8 C7 OLC sing 429 n n C24 C22 OLC sing 430 n n C24 O25 OLC sing 431 n n C16 C15 OLC sing 432 n n C12 C13 OLC sing 433 n n C7 C6 OLC sing 434 n n C15 C14 OLC sing 435 n n C13 C14 OLC sing 436 n n C6 C5 OLC sing 437 n n C5 C4 OLC sing 438 n n C4 C3 OLC sing 439 n n C3 C2 OLC sing 440 n n C2 C1 OLC sing 441 n n C21 C22 OLC sing 442 n n C21 O20 OLC sing 443 n n C1 O19 OLC doub 444 n n C1 O20 OLC sing 445 n n C22 O23 OLC sing 446 n n C18 H18 OLC sing 447 n n C18 H18A OLC sing 448 n n C18 H18B OLC sing 449 n n C10 H10 OLC sing 450 n n C9 H9 OLC sing 451 n n C17 H17 OLC sing 452 n n C17 H17A OLC sing 453 n n C11 H11 OLC sing 454 n n C11 H11A OLC sing 455 n n C8 H8 OLC sing 456 n n C8 H8A OLC sing 457 n n C24 H24 OLC sing 458 n n C24 H24A OLC sing 459 n n C16 H16 OLC sing 460 n n C16 H16A OLC sing 461 n n C12 H12 OLC sing 462 n n C12 H12A OLC sing 463 n n C7 H7 OLC sing 464 n n C7 H7A OLC sing 465 n n C15 H15 OLC sing 466 n n C15 H15A OLC sing 467 n n C13 H13 OLC sing 468 n n C13 H13A OLC sing 469 n n C6 H6 OLC sing 470 n n C6 H6A OLC sing 471 n n C14 H14 OLC sing 472 n n C14 H14A OLC sing 473 n n C5 H5 OLC sing 474 n n C5 H5A OLC sing 475 n n C4 H4 OLC sing 476 n n C4 H4A OLC sing 477 n n C3 H3 OLC sing 478 n n C3 H3A OLC sing 479 n n C2 H2 OLC sing 480 n n C2 H2A OLC sing 481 n n C21 H21 OLC sing 482 n n C21 H21A OLC sing 483 n n C22 H22 OLC sing 484 n n O25 HO25 OLC sing 485 n n O23 HO23 OLC sing 486 n n # _atom_sites.entry_id 6KUW _atom_sites.fract_transf_matrix[1][1] 0.013426 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0127 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005251 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 E33 A 1 1201 2002 E33 RS1 . D 3 CLR A 1 1202 2013 CLR CLR . E 4 OLC A 1 1203 2024 OLC OLC . F 4 OLC A 1 1204 2025 OLC OLC . G 4 OLC A 1 1205 2026 OLC OLC . H 4 OLC A 1 1206 2027 OLC OLC . I 4 OLC A 1 1207 2028 OLC OLC . J 5 OLA A 1 1208 2030 OLA OLA . K 5 OLA A 1 1209 2027 OLA OLA . L 2 E33 B 1 1201 2002 E33 RS1 . M 3 CLR B 1 1202 2013 CLR CLR . N 4 OLC B 1 1203 2024 OLC OLC . O 4 OLC B 1 1204 2025 OLC OLC . P 6 HOH A 1 1301 2036 HOH HOH . Q 6 HOH B 1 1301 2036 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 OLC . . . F 4 -33.234 -32.852 36.41 1 71.74 ? C10 OLC 1204 A 1 HETATM 2 C C9 OLC . . . F 4 -33.416 -32.916 35.08 1 71.26 ? C9 OLC 1204 A 1 HETATM 3 C C11 OLC . . . F 4 -34.252 -33.266 37.459 1 71.38 ? C11 OLC 1204 A 1 HETATM 4 C C8 OLC . . . F 4 -34.661 -33.424 34.375 1 71.02 ? C8 OLC 1204 A 1 HETATM 5 C C24 OLC . . . F 4 -33.784 -33.278 21.744 1 99.08 ? C24 OLC 1204 A 1 HETATM 6 C C12 OLC . . . F 4 -34.186 -32.331 38.663 1 70.82 ? C12 OLC 1204 A 1 HETATM 7 C C7 OLC . . . F 4 -35.202 -32.396 33.378 1 72.34 ? C7 OLC 1204 A 1 HETATM 8 C C15 OLC . . . F 4 -33.93 -32.847 42.504 1 70.96 ? C15 OLC 1204 A 1 HETATM 9 C C13 OLC . . . F 4 -33.868 -33.063 39.968 1 70.49 ? C13 OLC 1204 A 1 HETATM 10 C C6 OLC . . . F 4 -34.561 -32.5 31.996 1 73.6 ? C6 OLC 1204 A 1 HETATM 11 C C14 OLC . . . F 4 -34.079 -32.131 41.16 1 70.66 ? C14 OLC 1204 A 1 HETATM 12 C C5 OLC . . . F 4 -35.565 -32.852 30.904 1 75.76 ? C5 OLC 1204 A 1 HETATM 13 C C4 OLC . . . F 4 -34.968 -33.866 29.921 1 79.05 ? C4 OLC 1204 A 1 HETATM 14 C C3 OLC . . . F 4 -35.495 -33.701 28.495 1 82.97 ? C3 OLC 1204 A 1 HETATM 15 C C2 OLC . . . F 4 -34.432 -33.082 27.58 1 86.94 ? C2 OLC 1204 A 1 HETATM 16 C C21 OLC . . . F 4 -33.888 -32.979 24.261 1 97.19 ? C21 OLC 1204 A 1 HETATM 17 C C1 OLC . . . F 4 -34.974 -32.34 26.361 1 90.59 ? C1 OLC 1204 A 1 HETATM 18 C C22 OLC . . . F 4 -33.812 -32.276 22.902 1 98.31 ? C22 OLC 1204 A 1 HETATM 19 O O19 OLC . . . F 4 -36.144 -31.981 26.264 1 89.45 ? O19 OLC 1204 A 1 HETATM 20 O O25 OLC . . . F 4 -35.065 -33.872 21.491 1 98.93 ? O25 OLC 1204 A 1 HETATM 21 O O23 OLC . . . F 4 -34.877 -31.334 22.734 1 97.75 ? O23 OLC 1204 A 1 HETATM 22 O O20 OLC . . . F 4 -34.119 -32.041 25.322 1 94.54 ? O20 OLC 1204 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 22 #