data_6KVK # _model_server_result.job_id MjOHstYnxi9-98JzAD99eg _model_server_result.datetime_utc '2025-07-16 19:36:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kvk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 6KVK # _exptl.entry_id 6KVK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 480.591 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Steviolmonoside _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6KVK _cell.length_a 98.013 _cell.length_b 98.013 _cell.length_c 89.529 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KVK _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C26 H40 O8' _chem_comp.formula_weight 480.591 _chem_comp.id DX0 _chem_comp.mon_nstd_flag . _chem_comp.name Steviolmonoside _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAB CAA DX0 sing 83 n n CAB CAC DX0 sing 84 n n CAA CAF DX0 sing 85 n n CAL CAC DX0 sing 86 n n OBH CAK DX0 doub 87 n n CAC CAK DX0 sing 88 n n CAC CAD DX0 sing 89 n n CAF CAE DX0 sing 90 n n CAK OBG DX0 sing 91 n n CAD CAE DX0 sing 92 n n CAD CAG DX0 sing 93 n n CAE CAJ DX0 sing 94 n n CAE CAM DX0 sing 95 n n CAJ CAQ DX0 sing 96 n n CAJ CAI DX0 sing 97 n n CAG CAH DX0 sing 98 n n CAQ CAP DX0 sing 99 n n CAH CAI DX0 sing 100 n n CAI CAS DX0 sing 101 n n CAI CAN DX0 sing 102 n n CAS CAR DX0 sing 103 n n CAP CAO DX0 sing 104 n n CAN CAO DX0 sing 105 n n CAR CAO DX0 sing 106 n n CAR CAT DX0 doub 107 n n CAO O1 DX0 sing 108 n n O6 C6 DX0 sing 109 n n O1 C1 DX0 sing 110 n n O5 C1 DX0 sing 111 n n O5 C5 DX0 sing 112 n n C6 C5 DX0 sing 113 n n C1 C2 DX0 sing 114 n n C5 C4 DX0 sing 115 n n C2 O2 DX0 sing 116 n n C2 C3 DX0 sing 117 n n C4 C3 DX0 sing 118 n n C4 O4 DX0 sing 119 n n C3 O3 DX0 sing 120 n n C4 H1 DX0 sing 121 n n C5 H2 DX0 sing 122 n n C6 H3 DX0 sing 123 n n C6 H4 DX0 sing 124 n n C3 H5 DX0 sing 125 n n CAT H6 DX0 sing 126 n n CAT H7 DX0 sing 127 n n CAS H8 DX0 sing 128 n n CAS H9 DX0 sing 129 n n CAN H10 DX0 sing 130 n n CAN H11 DX0 sing 131 n n CAH H12 DX0 sing 132 n n CAH H13 DX0 sing 133 n n CAG H14 DX0 sing 134 n n CAG H15 DX0 sing 135 n n CAD H16 DX0 sing 136 n n CAL H17 DX0 sing 137 n n CAL H18 DX0 sing 138 n n CAL H19 DX0 sing 139 n n OBG H20 DX0 sing 140 n n CAB H21 DX0 sing 141 n n CAB H22 DX0 sing 142 n n CAA H23 DX0 sing 143 n n CAA H24 DX0 sing 144 n n CAF H25 DX0 sing 145 n n CAF H26 DX0 sing 146 n n CAM H27 DX0 sing 147 n n CAM H28 DX0 sing 148 n n CAM H29 DX0 sing 149 n n CAJ H30 DX0 sing 150 n n CAQ H31 DX0 sing 151 n n CAQ H32 DX0 sing 152 n n CAP H33 DX0 sing 153 n n CAP H34 DX0 sing 154 n n C1 H35 DX0 sing 155 n n O6 H36 DX0 sing 156 n n O4 H37 DX0 sing 157 n n O3 H38 DX0 sing 158 n n C2 H39 DX0 sing 159 n n O2 H40 DX0 sing 160 n n # _atom_sites.entry_id 6KVK _atom_sites.fract_transf_matrix[1][1] 0.010203 _atom_sites.fract_transf_matrix[1][2] 0.005891 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011781 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01117 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UDP A 1 501 1 UDP UDP . C 3 DX0 A 1 502 1 DX0 DRG . D 4 HOH A 1 601 55 HOH HOH . D 4 HOH A 2 602 94 HOH HOH . D 4 HOH A 3 603 2 HOH HOH . D 4 HOH A 4 604 75 HOH HOH . D 4 HOH A 5 605 69 HOH HOH . D 4 HOH A 6 606 90 HOH HOH . D 4 HOH A 7 607 12 HOH HOH . D 4 HOH A 8 608 7 HOH HOH . D 4 HOH A 9 609 41 HOH HOH . D 4 HOH A 10 610 78 HOH HOH . D 4 HOH A 11 611 21 HOH HOH . D 4 HOH A 12 612 86 HOH HOH . D 4 HOH A 13 613 1 HOH HOH . D 4 HOH A 14 614 16 HOH HOH . D 4 HOH A 15 615 76 HOH HOH . D 4 HOH A 16 616 57 HOH HOH . D 4 HOH A 17 617 23 HOH HOH . D 4 HOH A 18 618 13 HOH HOH . D 4 HOH A 19 619 67 HOH HOH . D 4 HOH A 20 620 8 HOH HOH . D 4 HOH A 21 621 44 HOH HOH . D 4 HOH A 22 622 11 HOH HOH . D 4 HOH A 23 623 65 HOH HOH . D 4 HOH A 24 624 19 HOH HOH . D 4 HOH A 25 625 79 HOH HOH . D 4 HOH A 26 626 33 HOH HOH . D 4 HOH A 27 627 48 HOH HOH . D 4 HOH A 28 628 9 HOH HOH . D 4 HOH A 29 629 38 HOH HOH . D 4 HOH A 30 630 53 HOH HOH . D 4 HOH A 31 631 47 HOH HOH . D 4 HOH A 32 632 5 HOH HOH . D 4 HOH A 33 633 80 HOH HOH . D 4 HOH A 34 634 34 HOH HOH . D 4 HOH A 35 635 37 HOH HOH . D 4 HOH A 36 636 26 HOH HOH . D 4 HOH A 37 637 32 HOH HOH . D 4 HOH A 38 638 82 HOH HOH . D 4 HOH A 39 639 29 HOH HOH . D 4 HOH A 40 640 56 HOH HOH . D 4 HOH A 41 641 3 HOH HOH . D 4 HOH A 42 642 30 HOH HOH . D 4 HOH A 43 643 22 HOH HOH . D 4 HOH A 44 644 4 HOH HOH . D 4 HOH A 45 645 20 HOH HOH . D 4 HOH A 46 646 28 HOH HOH . D 4 HOH A 47 647 31 HOH HOH . D 4 HOH A 48 648 49 HOH HOH . D 4 HOH A 49 649 52 HOH HOH . D 4 HOH A 50 650 6 HOH HOH . D 4 HOH A 51 651 50 HOH HOH . D 4 HOH A 52 652 83 HOH HOH . D 4 HOH A 53 653 39 HOH HOH . D 4 HOH A 54 654 93 HOH HOH . D 4 HOH A 55 655 74 HOH HOH . D 4 HOH A 56 656 24 HOH HOH . D 4 HOH A 57 657 27 HOH HOH . D 4 HOH A 58 658 62 HOH HOH . D 4 HOH A 59 659 40 HOH HOH . D 4 HOH A 60 660 87 HOH HOH . D 4 HOH A 61 661 58 HOH HOH . D 4 HOH A 62 662 61 HOH HOH . D 4 HOH A 63 663 68 HOH HOH . D 4 HOH A 64 664 51 HOH HOH . D 4 HOH A 65 665 92 HOH HOH . D 4 HOH A 66 666 25 HOH HOH . D 4 HOH A 67 667 17 HOH HOH . D 4 HOH A 68 668 66 HOH HOH . D 4 HOH A 69 669 73 HOH HOH . D 4 HOH A 70 670 81 HOH HOH . D 4 HOH A 71 671 15 HOH HOH . D 4 HOH A 72 672 35 HOH HOH . D 4 HOH A 73 673 72 HOH HOH . D 4 HOH A 74 674 63 HOH HOH . D 4 HOH A 75 675 64 HOH HOH . D 4 HOH A 76 676 84 HOH HOH . D 4 HOH A 77 677 91 HOH HOH . D 4 HOH A 78 678 85 HOH HOH . D 4 HOH A 79 679 18 HOH HOH . D 4 HOH A 80 680 70 HOH HOH . D 4 HOH A 81 681 95 HOH HOH . D 4 HOH A 82 682 60 HOH HOH . D 4 HOH A 83 683 77 HOH HOH . D 4 HOH A 84 684 46 HOH HOH . D 4 HOH A 85 685 59 HOH HOH . D 4 HOH A 86 686 54 HOH HOH . D 4 HOH A 87 687 10 HOH HOH . D 4 HOH A 88 688 71 HOH HOH . D 4 HOH A 89 689 88 HOH HOH . D 4 HOH A 90 690 45 HOH HOH . D 4 HOH A 91 691 36 HOH HOH . D 4 HOH A 92 692 43 HOH HOH . D 4 HOH A 93 693 96 HOH HOH . D 4 HOH A 94 694 89 HOH HOH . D 4 HOH A 95 695 42 HOH HOH . D 4 HOH A 96 696 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 DX0 . . . C 3 -24.377 11.079 -6.175 1 52.8 ? C4 DX0 502 A 1 HETATM 2 C C5 DX0 . . . C 3 -25.097 9.926 -6.892 1 49.47 ? C5 DX0 502 A 1 HETATM 3 C C6 DX0 . . . C 3 -24.043 9.005 -7.527 1 50.66 ? C6 DX0 502 A 1 HETATM 4 C C3 DX0 . . . C 3 -25.427 11.896 -5.458 1 48.2 ? C3 DX0 502 A 1 HETATM 5 C CAT DX0 . . . C 3 -30.401 12.939 -9.334 1 43.43 ? CAT DX0 502 A 1 HETATM 6 C CAR DX0 . . . C 3 -29.728 11.899 -9.841 1 52.02 ? CAR DX0 502 A 1 HETATM 7 C CAS DX0 . . . C 3 -30.35 10.923 -10.656 1 48.28 ? CAS DX0 502 A 1 HETATM 8 C CAI DX0 . . . C 3 -29.164 10.152 -11.215 1 55.68 ? CAI DX0 502 A 1 HETATM 9 C CAN DX0 . . . C 3 -28.3 10.11 -9.927 1 50.67 ? CAN DX0 502 A 1 HETATM 10 C CAH DX0 . . . C 3 -29.575 8.762 -11.666 1 50.64 ? CAH DX0 502 A 1 HETATM 11 C CAG DX0 . . . C 3 -28.387 8.036 -12.318 1 53.5 ? CAG DX0 502 A 1 HETATM 12 C CAD DX0 . . . C 3 -27.957 8.818 -13.565 1 56.67 ? CAD DX0 502 A 1 HETATM 13 C CAC DX0 . . . C 3 -26.99 7.996 -14.463 1 64.63 ? CAC DX0 502 A 1 HETATM 14 C CAL DX0 . . . C 3 -27.756 6.75 -14.93 1 65.67 ? CAL DX0 502 A 1 HETATM 15 C CAK DX0 . . . C 3 -25.693 7.506 -13.778 1 68.22 ? CAK DX0 502 A 1 HETATM 16 O OBH DX0 . . . C 3 -24.678 7.399 -14.516 1 68.57 ? OBH DX0 502 A 1 HETATM 17 O OBG DX0 . . . C 3 -25.755 7.197 -12.561 1 65.54 ? OBG DX0 502 A 1 HETATM 18 C CAB DX0 . . . C 3 -26.612 8.865 -15.685 1 65.83 ? CAB DX0 502 A 1 HETATM 19 C CAA DX0 . . . C 3 -25.982 10.18 -15.236 1 59.07 ? CAA DX0 502 A 1 HETATM 20 C CAF DX0 . . . C 3 -27.001 10.967 -14.427 1 57.46 ? CAF DX0 502 A 1 HETATM 21 C CAE DX0 . . . C 3 -27.395 10.187 -13.158 1 56.71 ? CAE DX0 502 A 1 HETATM 22 C CAM DX0 . . . C 3 -26.167 10.046 -12.257 1 53.39 ? CAM DX0 502 A 1 HETATM 23 C CAJ DX0 . . . C 3 -28.541 10.947 -12.427 1 54.91 ? CAJ DX0 502 A 1 HETATM 24 C CAQ DX0 . . . C 3 -28.11 12.36 -11.992 1 47.4 ? CAQ DX0 502 A 1 HETATM 25 C CAP DX0 . . . C 3 -27.46 12.371 -10.588 1 42.21 ? CAP DX0 502 A 1 HETATM 26 C CAO DX0 . . . C 3 -28.348 11.604 -9.598 1 49.4 ? CAO DX0 502 A 1 HETATM 27 O O1 DX0 . . . C 3 -27.991 11.976 -8.214 1 46.04 ? O1 DX0 502 A 1 HETATM 28 C C1 DX0 . . . C 3 -27.017 11.358 -7.297 1 42.95 ? C1 DX0 502 A 1 HETATM 29 O O5 DX0 . . . C 3 -26.002 10.496 -7.871 1 46.73 ? O5 DX0 502 A 1 HETATM 30 O O6 DX0 . . . C 3 -24.526 8.395 -8.734 1 58.9 ? O6 DX0 502 A 1 HETATM 31 O O4 DX0 . . . C 3 -23.398 10.567 -5.27 1 57 ? O4 DX0 502 A 1 HETATM 32 O O3 DX0 . . . C 3 -24.822 12.94 -4.683 1 60.22 ? O3 DX0 502 A 1 HETATM 33 C C2 DX0 . . . C 3 -26.316 12.489 -6.554 1 50.85 ? C2 DX0 502 A 1 HETATM 34 O O2 DX0 . . . C 3 -27.279 13.399 -5.997 1 44.55 ? O2 DX0 502 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 34 #