data_6KVZ # _model_server_result.job_id QD1jGMX41N64w11G_VYbBg _model_server_result.datetime_utc '2024-11-27 01:06:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kvz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 6KVZ # _exptl.entry_id 6KVZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6KVZ _cell.length_a 87.415 _cell.length_b 111.423 _cell.length_c 60.352 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KVZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab' _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TYR 414 A TYR 411 1_555 A N CSS 415 A CSS 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C CSS 415 A CSS 412 1_555 A N GLY 416 A GLY 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? metalc ? metalc1 A NE2 HIS 77 A HIS 74 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc2 A OD2 ASP 153 A ASP 150 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc3 A O TRP 219 A TRP 216 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc4 A OD1 ASN 220 A ASN 217 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc5 A NE2 HIS 394 A HIS 391 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc6 A O VAL 417 A VAL 414 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc7 A O ASP 440 A ASP 437 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc8 A OD1 ASP 440 A ASP 437 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? metalc ? metalc9 C MG MG . A MG 502 1_555 H O HOH . A HOH 735 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc10 D MG MG . A MG 503 1_555 H O HOH . A HOH 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6KVZ _atom_sites.fract_transf_matrix[1][1] 0.01144 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008975 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016569 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AVJ A 1 501 1 AVJ AVJ . C 3 MG A 1 502 1 MG MG . D 3 MG A 1 503 2 MG MG . E 4 CL A 1 504 1 CL CL . F 4 CL A 1 505 2 CL CL . G 5 PEG A 1 506 1 PEG PEG . H 6 HOH A 1 601 45 HOH HOH . H 6 HOH A 2 602 59 HOH HOH . H 6 HOH A 3 603 166 HOH HOH . H 6 HOH A 4 604 48 HOH HOH . H 6 HOH A 5 605 25 HOH HOH . H 6 HOH A 6 606 49 HOH HOH . H 6 HOH A 7 607 123 HOH HOH . H 6 HOH A 8 608 72 HOH HOH . H 6 HOH A 9 609 85 HOH HOH . H 6 HOH A 10 610 117 HOH HOH . H 6 HOH A 11 611 77 HOH HOH . H 6 HOH A 12 612 94 HOH HOH . H 6 HOH A 13 613 144 HOH HOH . H 6 HOH A 14 614 230 HOH HOH . H 6 HOH A 15 615 137 HOH HOH . H 6 HOH A 16 616 204 HOH HOH . H 6 HOH A 17 617 81 HOH HOH . H 6 HOH A 18 618 21 HOH HOH . H 6 HOH A 19 619 53 HOH HOH . H 6 HOH A 20 620 136 HOH HOH . H 6 HOH A 21 621 41 HOH HOH . H 6 HOH A 22 622 4 HOH HOH . H 6 HOH A 23 623 12 HOH HOH . H 6 HOH A 24 624 10 HOH HOH . H 6 HOH A 25 625 92 HOH HOH . H 6 HOH A 26 626 196 HOH HOH . H 6 HOH A 27 627 69 HOH HOH . H 6 HOH A 28 628 168 HOH HOH . H 6 HOH A 29 629 30 HOH HOH . H 6 HOH A 30 630 159 HOH HOH . H 6 HOH A 31 631 24 HOH HOH . H 6 HOH A 32 632 42 HOH HOH . H 6 HOH A 33 633 8 HOH HOH . H 6 HOH A 34 634 125 HOH HOH . H 6 HOH A 35 635 18 HOH HOH . H 6 HOH A 36 636 227 HOH HOH . H 6 HOH A 37 637 47 HOH HOH . H 6 HOH A 38 638 7 HOH HOH . H 6 HOH A 39 639 9 HOH HOH . H 6 HOH A 40 640 261 HOH HOH . H 6 HOH A 41 641 165 HOH HOH . H 6 HOH A 42 642 220 HOH HOH . H 6 HOH A 43 643 23 HOH HOH . H 6 HOH A 44 644 111 HOH HOH . H 6 HOH A 45 645 218 HOH HOH . H 6 HOH A 46 646 199 HOH HOH . H 6 HOH A 47 647 78 HOH HOH . H 6 HOH A 48 648 176 HOH HOH . H 6 HOH A 49 649 70 HOH HOH . H 6 HOH A 50 650 52 HOH HOH . H 6 HOH A 51 651 240 HOH HOH . H 6 HOH A 52 652 145 HOH HOH . H 6 HOH A 53 653 102 HOH HOH . H 6 HOH A 54 654 13 HOH HOH . H 6 HOH A 55 655 122 HOH HOH . H 6 HOH A 56 656 74 HOH HOH . H 6 HOH A 57 657 46 HOH HOH . H 6 HOH A 58 658 205 HOH HOH . H 6 HOH A 59 659 149 HOH HOH . H 6 HOH A 60 660 14 HOH HOH . H 6 HOH A 61 661 6 HOH HOH . H 6 HOH A 62 662 39 HOH HOH . H 6 HOH A 63 663 162 HOH HOH . H 6 HOH A 64 664 65 HOH HOH . H 6 HOH A 65 665 64 HOH HOH . H 6 HOH A 66 666 187 HOH HOH . H 6 HOH A 67 667 58 HOH HOH . H 6 HOH A 68 668 112 HOH HOH . H 6 HOH A 69 669 35 HOH HOH . H 6 HOH A 70 670 100 HOH HOH . H 6 HOH A 71 671 146 HOH HOH . H 6 HOH A 72 672 16 HOH HOH . H 6 HOH A 73 673 36 HOH HOH . H 6 HOH A 74 674 51 HOH HOH . H 6 HOH A 75 675 95 HOH HOH . H 6 HOH A 76 676 68 HOH HOH . H 6 HOH A 77 677 109 HOH HOH . H 6 HOH A 78 678 257 HOH HOH . H 6 HOH A 79 679 252 HOH HOH . H 6 HOH A 80 680 19 HOH HOH . H 6 HOH A 81 681 143 HOH HOH . H 6 HOH A 82 682 169 HOH HOH . H 6 HOH A 83 683 97 HOH HOH . H 6 HOH A 84 684 63 HOH HOH . H 6 HOH A 85 685 37 HOH HOH . H 6 HOH A 86 686 154 HOH HOH . H 6 HOH A 87 687 93 HOH HOH . H 6 HOH A 88 688 222 HOH HOH . H 6 HOH A 89 689 86 HOH HOH . H 6 HOH A 90 690 181 HOH HOH . H 6 HOH A 91 691 67 HOH HOH . H 6 HOH A 92 692 234 HOH HOH . H 6 HOH A 93 693 5 HOH HOH . H 6 HOH A 94 694 54 HOH HOH . H 6 HOH A 95 695 27 HOH HOH . H 6 HOH A 96 696 83 HOH HOH . H 6 HOH A 97 697 200 HOH HOH . H 6 HOH A 98 698 202 HOH HOH . H 6 HOH A 99 699 186 HOH HOH . H 6 HOH A 100 700 266 HOH HOH . H 6 HOH A 101 701 177 HOH HOH . H 6 HOH A 102 702 62 HOH HOH . H 6 HOH A 103 703 34 HOH HOH . H 6 HOH A 104 704 57 HOH HOH . H 6 HOH A 105 705 38 HOH HOH . H 6 HOH A 106 706 66 HOH HOH . H 6 HOH A 107 707 128 HOH HOH . H 6 HOH A 108 708 139 HOH HOH . H 6 HOH A 109 709 104 HOH HOH . H 6 HOH A 110 710 87 HOH HOH . H 6 HOH A 111 711 89 HOH HOH . H 6 HOH A 112 712 33 HOH HOH . H 6 HOH A 113 713 80 HOH HOH . H 6 HOH A 114 714 20 HOH HOH . H 6 HOH A 115 715 129 HOH HOH . H 6 HOH A 116 716 192 HOH HOH . H 6 HOH A 117 717 15 HOH HOH . H 6 HOH A 118 718 116 HOH HOH . H 6 HOH A 119 719 44 HOH HOH . H 6 HOH A 120 720 156 HOH HOH . H 6 HOH A 121 721 152 HOH HOH . H 6 HOH A 122 722 40 HOH HOH . H 6 HOH A 123 723 71 HOH HOH . H 6 HOH A 124 724 99 HOH HOH . H 6 HOH A 125 725 183 HOH HOH . H 6 HOH A 126 726 82 HOH HOH . H 6 HOH A 127 727 56 HOH HOH . H 6 HOH A 128 728 219 HOH HOH . H 6 HOH A 129 729 22 HOH HOH . H 6 HOH A 130 730 172 HOH HOH . H 6 HOH A 131 731 150 HOH HOH . H 6 HOH A 132 732 75 HOH HOH . H 6 HOH A 133 733 135 HOH HOH . H 6 HOH A 134 734 26 HOH HOH . H 6 HOH A 135 735 1 HOH HOH . H 6 HOH A 136 736 101 HOH HOH . H 6 HOH A 137 737 133 HOH HOH . H 6 HOH A 138 738 197 HOH HOH . H 6 HOH A 139 739 17 HOH HOH . H 6 HOH A 140 740 31 HOH HOH . H 6 HOH A 141 741 73 HOH HOH . H 6 HOH A 142 742 148 HOH HOH . H 6 HOH A 143 743 259 HOH HOH . H 6 HOH A 144 744 119 HOH HOH . H 6 HOH A 145 745 79 HOH HOH . H 6 HOH A 146 746 113 HOH HOH . H 6 HOH A 147 747 147 HOH HOH . H 6 HOH A 148 748 194 HOH HOH . H 6 HOH A 149 749 158 HOH HOH . H 6 HOH A 150 750 84 HOH HOH . H 6 HOH A 151 751 251 HOH HOH . H 6 HOH A 152 752 244 HOH HOH . H 6 HOH A 153 753 127 HOH HOH . H 6 HOH A 154 754 264 HOH HOH . H 6 HOH A 155 755 216 HOH HOH . H 6 HOH A 156 756 151 HOH HOH . H 6 HOH A 157 757 138 HOH HOH . H 6 HOH A 158 758 190 HOH HOH . H 6 HOH A 159 759 201 HOH HOH . H 6 HOH A 160 760 28 HOH HOH . H 6 HOH A 161 761 164 HOH HOH . H 6 HOH A 162 762 88 HOH HOH . H 6 HOH A 163 763 134 HOH HOH . H 6 HOH A 164 764 238 HOH HOH . H 6 HOH A 165 765 98 HOH HOH . H 6 HOH A 166 766 61 HOH HOH . H 6 HOH A 167 767 211 HOH HOH . H 6 HOH A 168 768 105 HOH HOH . H 6 HOH A 169 769 155 HOH HOH . H 6 HOH A 170 770 103 HOH HOH . H 6 HOH A 171 771 11 HOH HOH . H 6 HOH A 172 772 76 HOH HOH . H 6 HOH A 173 773 106 HOH HOH . H 6 HOH A 174 774 223 HOH HOH . H 6 HOH A 175 775 132 HOH HOH . H 6 HOH A 176 776 188 HOH HOH . H 6 HOH A 177 777 140 HOH HOH . H 6 HOH A 178 778 60 HOH HOH . H 6 HOH A 179 779 265 HOH HOH . H 6 HOH A 180 780 175 HOH HOH . H 6 HOH A 181 781 203 HOH HOH . H 6 HOH A 182 782 250 HOH HOH . H 6 HOH A 183 783 262 HOH HOH . H 6 HOH A 184 784 209 HOH HOH . H 6 HOH A 185 785 90 HOH HOH . H 6 HOH A 186 786 256 HOH HOH . H 6 HOH A 187 787 258 HOH HOH . H 6 HOH A 188 788 248 HOH HOH . H 6 HOH A 189 789 120 HOH HOH . H 6 HOH A 190 790 126 HOH HOH . H 6 HOH A 191 791 185 HOH HOH . H 6 HOH A 192 792 124 HOH HOH . H 6 HOH A 193 793 178 HOH HOH . H 6 HOH A 194 794 193 HOH HOH . H 6 HOH A 195 795 254 HOH HOH . H 6 HOH A 196 796 245 HOH HOH . H 6 HOH A 197 797 50 HOH HOH . H 6 HOH A 198 798 110 HOH HOH . H 6 HOH A 199 799 167 HOH HOH . H 6 HOH A 200 800 182 HOH HOH . H 6 HOH A 201 801 224 HOH HOH . H 6 HOH A 202 802 189 HOH HOH . H 6 HOH A 203 803 267 HOH HOH . H 6 HOH A 204 804 236 HOH HOH . H 6 HOH A 205 805 191 HOH HOH . H 6 HOH A 206 806 226 HOH HOH . H 6 HOH A 207 807 229 HOH HOH . H 6 HOH A 208 808 235 HOH HOH . H 6 HOH A 209 809 161 HOH HOH . H 6 HOH A 210 810 241 HOH HOH . H 6 HOH A 211 811 107 HOH HOH . H 6 HOH A 212 812 239 HOH HOH . H 6 HOH A 213 813 141 HOH HOH . H 6 HOH A 214 814 210 HOH HOH . H 6 HOH A 215 815 255 HOH HOH . H 6 HOH A 216 816 260 HOH HOH . H 6 HOH A 217 817 142 HOH HOH . H 6 HOH A 218 818 231 HOH HOH . H 6 HOH A 219 819 157 HOH HOH . H 6 HOH A 220 820 253 HOH HOH . H 6 HOH A 221 821 163 HOH HOH . H 6 HOH A 222 822 130 HOH HOH . H 6 HOH A 223 823 160 HOH HOH . H 6 HOH A 224 824 225 HOH HOH . H 6 HOH A 225 825 118 HOH HOH . H 6 HOH A 226 826 173 HOH HOH . H 6 HOH A 227 827 217 HOH HOH . H 6 HOH A 228 828 170 HOH HOH . H 6 HOH A 229 829 214 HOH HOH . H 6 HOH A 230 830 179 HOH HOH . H 6 HOH A 231 831 249 HOH HOH . H 6 HOH A 232 832 213 HOH HOH . H 6 HOH A 233 833 242 HOH HOH . H 6 HOH A 234 834 96 HOH HOH . H 6 HOH A 235 835 55 HOH HOH . H 6 HOH A 236 836 198 HOH HOH . H 6 HOH A 237 837 247 HOH HOH . H 6 HOH A 238 838 180 HOH HOH . H 6 HOH A 239 839 232 HOH HOH . H 6 HOH A 240 840 243 HOH HOH . H 6 HOH A 241 841 195 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 21.013 _atom_site.Cartn_y 141.568 _atom_site.Cartn_z 48.623 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 27.72 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 502 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #