data_6KW0 # _model_server_result.job_id dTp-z03zmMxLU7kHxU4t6g _model_server_result.datetime_utc '2025-07-27 14:55:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kw0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":505}' # _entry.id 6KW0 # _exptl.entry_id 6KW0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 230.307 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description trimethyl-[(2S)-1-oxidanyl-1-oxidanylidene-3-(2-sulfanylidene-1,3-dihydroimidazol-4-yl)propan-2-yl]azanium _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.8 _cell.angle_gamma 90 _cell.entry_id 6KW0 _cell.length_a 59.206 _cell.length_b 87.413 _cell.length_c 92.106 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KW0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,M 1 1 B,H,I,J,K,L,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 415 A CYS 412 1_555 G S15 LW8 . A LW8 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? covale ? covale2 B SG CYS 415 B CYS 412 1_555 L S15 LW8 . B LW8 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc1 A O TRP 219 A TRP 216 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc2 A OD1 ASN 220 A ASN 217 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc3 A O THR 417 A THR 414 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc4 A O ASP 440 A ASP 437 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc5 A OD1 ASP 440 A ASP 437 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc6 D MG MG . A MG 502 1_555 M O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc7 B O TRP 219 B TRP 216 1_555 J MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc8 B OD1 ASN 220 B ASN 217 1_555 J MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc9 B O THR 417 B THR 414 1_555 J MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? metalc ? metalc10 B O ASP 440 B ASP 437 1_555 J MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc11 B OD1 ASP 440 B ASP 437 1_555 J MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc12 J MG MG . B MG 503 1_555 N O HOH . B HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? # _chem_comp.formula 'C9 H16 N3 O2 S 1' _chem_comp.formula_weight 230.307 _chem_comp.id LW8 _chem_comp.mon_nstd_flag . _chem_comp.name trimethyl-[(2S)-1-oxidanyl-1-oxidanylidene-3-(2-sulfanylidene-1,3-dihydroimidazol-4-yl)propan-2-yl]azanium _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C12 C10 LW8 doub 194 n n C12 N13 LW8 sing 195 n n C09 C10 LW8 sing 196 n n C09 C04 LW8 sing 197 n n C08 N05 LW8 sing 198 n n C10 N11 LW8 sing 199 n n N13 C14 LW8 sing 200 n n O03 C02 LW8 doub 201 n n N11 C14 LW8 sing 202 n n C14 S15 LW8 doub 203 n n N05 C04 LW8 sing 204 n n N05 C06 LW8 sing 205 n n N05 C07 LW8 sing 206 n n C04 C02 LW8 sing 207 n n C02 O01 LW8 sing 208 n n O01 H1 LW8 sing 209 n n C04 H2 LW8 sing 210 n n C06 H3 LW8 sing 211 n n C06 H4 LW8 sing 212 n n C06 H5 LW8 sing 213 n n C07 H6 LW8 sing 214 n n C07 H7 LW8 sing 215 n n C07 H8 LW8 sing 216 n n C08 H9 LW8 sing 217 n n C08 H10 LW8 sing 218 n n C08 H11 LW8 sing 219 n n C09 H12 LW8 sing 220 n n C09 H13 LW8 sing 221 n n C12 H14 LW8 sing 222 n n N11 H15 LW8 sing 223 n n N13 H16 LW8 sing 224 n n # _atom_sites.entry_id 6KW0 _atom_sites.fract_transf_matrix[1][1] 0.01689 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000531 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01144 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010862 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL A 1 501 1 CL CL . D 3 MG A 1 502 1 MG MG . E 4 BR A 1 503 2 BR BR . F 5 PGE A 1 504 1 PGE PGE . G 6 LW8 A 1 505 2 LW8 LW1 . H 2 CL B 1 501 4 CL CL . I 2 CL B 1 502 5 CL CL . J 3 MG B 1 503 2 MG MG . K 4 BR B 1 504 1 BR BR . L 6 LW8 B 1 505 1 LW8 LW1 . M 7 HOH A 1 601 1 HOH HOH . M 7 HOH A 2 602 6 HOH HOH . M 7 HOH A 3 603 5 HOH HOH . M 7 HOH A 4 604 2 HOH HOH . M 7 HOH A 5 605 8 HOH HOH . M 7 HOH A 6 606 11 HOH HOH . M 7 HOH A 7 607 9 HOH HOH . M 7 HOH A 8 608 12 HOH HOH . N 7 HOH B 1 601 4 HOH HOH . N 7 HOH B 2 602 10 HOH HOH . N 7 HOH B 3 603 3 HOH HOH . N 7 HOH B 4 604 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 LW8 . . . G 6 -13.641 24.828 233.14 1 31.22 ? O01 LW8 505 A 1 HETATM 2 C C02 LW8 . . . G 6 -12.921 24.985 232.149 1 33.05 ? C02 LW8 505 A 1 HETATM 3 O O03 LW8 . . . G 6 -12 25.766 231.92 1 30.92 ? O03 LW8 505 A 1 HETATM 4 C C04 LW8 . . . G 6 -13.277 23.926 230.946 1 30.9 ? C04 LW8 505 A 1 HETATM 5 N N05 LW8 . . . G 6 -13.801 24.738 229.693 1 29.96 ? N05 LW8 505 A 1 HETATM 6 C C06 LW8 . . . G 6 -12.676 25.322 228.843 1 29.7 ? C06 LW8 505 A 1 HETATM 7 C C07 LW8 . . . G 6 -14.689 25.897 230.142 1 30.93 ? C07 LW8 505 A 1 HETATM 8 C C08 LW8 . . . G 6 -14.638 23.823 228.813 1 31.69 ? C08 LW8 505 A 1 HETATM 9 C C09 LW8 . . . G 6 -12.073 23.077 230.549 1 27.8 ? C09 LW8 505 A 1 HETATM 10 C C10 LW8 . . . G 6 -11.933 21.774 231.242 1 28.36 ? C10 LW8 505 A 1 HETATM 11 N N11 LW8 . . . G 6 -12.99 20.807 231.076 1 29.28 ? N11 LW8 505 A 1 HETATM 12 C C14 LW8 . . . G 6 -12.847 19.852 232.183 1 33.59 ? C14 LW8 505 A 1 HETATM 13 S S15 LW8 . . . G 6 -12.985 18.063 231.6 1 40.17 ? S15 LW8 505 A 1 HETATM 14 N N13 LW8 . . . G 6 -11.544 20.159 232.809 1 30.22 ? N13 LW8 505 A 1 HETATM 15 C C12 LW8 . . . G 6 -11.1 21.393 232.249 1 26.09 ? C12 LW8 505 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 350 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 15 #