data_6KWD # _model_server_result.job_id m5mz5_ofJ1m4fbl-aupKOQ _model_server_result.datetime_utc '2024-11-13 18:51:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kwd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 6KWD # _exptl.entry_id 6KWD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6KWD _cell.length_a 47.598 _cell.length_b 59.161 _cell.length_c 69.604 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KWD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 XYP XYP C1 O1 . O4 HO4 . sing 2 ? 2 3 2 XYP XYP C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B XYP 1 B 1 XYP A 203 XYP 2 n B XYP 2 B 2 XYP A 202 XYP 2 n B XYP 3 B 3 XYP A 201 XYP # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O4 XYP . B XYP 1 1_555 B C1 XYP . B XYP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? covale ? covale2 B O4 XYP . B XYP 2 1_555 B C1 XYP . B XYP 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.391 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 6KWD _atom_sites.fract_transf_matrix[1][1] 0.021009 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016903 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014367 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 201 204 GOL GOL . D 4 IOD A 1 202 1 IOD IOD . E 5 HOH A 1 301 236 HOH HOH . E 5 HOH A 2 302 245 HOH HOH . E 5 HOH A 3 303 83 HOH HOH . E 5 HOH A 4 304 243 HOH HOH . E 5 HOH A 5 305 158 HOH HOH . E 5 HOH A 6 306 92 HOH HOH . E 5 HOH A 7 307 197 HOH HOH . E 5 HOH A 8 308 105 HOH HOH . E 5 HOH A 9 309 186 HOH HOH . E 5 HOH A 10 310 88 HOH HOH . E 5 HOH A 11 311 165 HOH HOH . E 5 HOH A 12 312 181 HOH HOH . E 5 HOH A 13 313 238 HOH HOH . E 5 HOH A 14 314 203 HOH HOH . E 5 HOH A 15 315 28 HOH HOH . E 5 HOH A 16 316 212 HOH HOH . E 5 HOH A 17 317 90 HOH HOH . E 5 HOH A 18 318 198 HOH HOH . E 5 HOH A 19 319 120 HOH HOH . E 5 HOH A 20 320 37 HOH HOH . E 5 HOH A 21 321 170 HOH HOH . E 5 HOH A 22 322 39 HOH HOH . E 5 HOH A 23 323 122 HOH HOH . E 5 HOH A 24 324 46 HOH HOH . E 5 HOH A 25 325 76 HOH HOH . E 5 HOH A 26 326 32 HOH HOH . E 5 HOH A 27 327 61 HOH HOH . E 5 HOH A 28 328 190 HOH HOH . E 5 HOH A 29 329 16 HOH HOH . E 5 HOH A 30 330 199 HOH HOH . E 5 HOH A 31 331 208 HOH HOH . E 5 HOH A 32 332 152 HOH HOH . E 5 HOH A 33 333 187 HOH HOH . E 5 HOH A 34 334 5 HOH HOH . E 5 HOH A 35 335 182 HOH HOH . E 5 HOH A 36 336 240 HOH HOH . E 5 HOH A 37 337 234 HOH HOH . E 5 HOH A 38 338 210 HOH HOH . E 5 HOH A 39 339 207 HOH HOH . E 5 HOH A 40 340 12 HOH HOH . E 5 HOH A 41 341 19 HOH HOH . E 5 HOH A 42 342 127 HOH HOH . E 5 HOH A 43 343 179 HOH HOH . E 5 HOH A 44 344 104 HOH HOH . E 5 HOH A 45 345 15 HOH HOH . E 5 HOH A 46 346 45 HOH HOH . E 5 HOH A 47 347 178 HOH HOH . E 5 HOH A 48 348 159 HOH HOH . E 5 HOH A 49 349 3 HOH HOH . E 5 HOH A 50 350 155 HOH HOH . E 5 HOH A 51 351 101 HOH HOH . E 5 HOH A 52 352 13 HOH HOH . E 5 HOH A 53 353 7 HOH HOH . E 5 HOH A 54 354 168 HOH HOH . E 5 HOH A 55 355 6 HOH HOH . E 5 HOH A 56 356 142 HOH HOH . E 5 HOH A 57 357 34 HOH HOH . E 5 HOH A 58 358 48 HOH HOH . E 5 HOH A 59 359 21 HOH HOH . E 5 HOH A 60 360 192 HOH HOH . E 5 HOH A 61 361 80 HOH HOH . E 5 HOH A 62 362 40 HOH HOH . E 5 HOH A 63 363 183 HOH HOH . E 5 HOH A 64 364 112 HOH HOH . E 5 HOH A 65 365 125 HOH HOH . E 5 HOH A 66 366 128 HOH HOH . E 5 HOH A 67 367 54 HOH HOH . E 5 HOH A 68 368 47 HOH HOH . E 5 HOH A 69 369 62 HOH HOH . E 5 HOH A 70 370 91 HOH HOH . E 5 HOH A 71 371 188 HOH HOH . E 5 HOH A 72 372 68 HOH HOH . E 5 HOH A 73 373 124 HOH HOH . E 5 HOH A 74 374 235 HOH HOH . E 5 HOH A 75 375 22 HOH HOH . E 5 HOH A 76 376 26 HOH HOH . E 5 HOH A 77 377 224 HOH HOH . E 5 HOH A 78 378 1 HOH HOH . E 5 HOH A 79 379 44 HOH HOH . E 5 HOH A 80 380 229 HOH HOH . E 5 HOH A 81 381 150 HOH HOH . E 5 HOH A 82 382 29 HOH HOH . E 5 HOH A 83 383 79 HOH HOH . E 5 HOH A 84 384 133 HOH HOH . E 5 HOH A 85 385 59 HOH HOH . E 5 HOH A 86 386 31 HOH HOH . E 5 HOH A 87 387 2 HOH HOH . E 5 HOH A 88 388 123 HOH HOH . E 5 HOH A 89 389 99 HOH HOH . E 5 HOH A 90 390 231 HOH HOH . E 5 HOH A 91 391 102 HOH HOH . E 5 HOH A 92 392 111 HOH HOH . E 5 HOH A 93 393 43 HOH HOH . E 5 HOH A 94 394 157 HOH HOH . E 5 HOH A 95 395 174 HOH HOH . E 5 HOH A 96 396 69 HOH HOH . E 5 HOH A 97 397 189 HOH HOH . E 5 HOH A 98 398 4 HOH HOH . E 5 HOH A 99 399 228 HOH HOH . E 5 HOH A 100 400 84 HOH HOH . E 5 HOH A 101 401 75 HOH HOH . E 5 HOH A 102 402 85 HOH HOH . E 5 HOH A 103 403 166 HOH HOH . E 5 HOH A 104 404 161 HOH HOH . E 5 HOH A 105 405 67 HOH HOH . E 5 HOH A 106 406 51 HOH HOH . E 5 HOH A 107 407 86 HOH HOH . E 5 HOH A 108 408 30 HOH HOH . E 5 HOH A 109 409 42 HOH HOH . E 5 HOH A 110 410 50 HOH HOH . E 5 HOH A 111 411 41 HOH HOH . E 5 HOH A 112 412 74 HOH HOH . E 5 HOH A 113 413 164 HOH HOH . E 5 HOH A 114 414 218 HOH HOH . E 5 HOH A 115 415 167 HOH HOH . E 5 HOH A 116 416 58 HOH HOH . E 5 HOH A 117 417 9 HOH HOH . E 5 HOH A 118 418 71 HOH HOH . E 5 HOH A 119 419 130 HOH HOH . E 5 HOH A 120 420 35 HOH HOH . E 5 HOH A 121 421 195 HOH HOH . E 5 HOH A 122 422 103 HOH HOH . E 5 HOH A 123 423 65 HOH HOH . E 5 HOH A 124 424 132 HOH HOH . E 5 HOH A 125 425 25 HOH HOH . E 5 HOH A 126 426 73 HOH HOH . E 5 HOH A 127 427 200 HOH HOH . E 5 HOH A 128 428 64 HOH HOH . E 5 HOH A 129 429 156 HOH HOH . E 5 HOH A 130 430 121 HOH HOH . E 5 HOH A 131 431 213 HOH HOH . E 5 HOH A 132 432 162 HOH HOH . E 5 HOH A 133 433 180 HOH HOH . E 5 HOH A 134 434 119 HOH HOH . E 5 HOH A 135 435 56 HOH HOH . E 5 HOH A 136 436 193 HOH HOH . E 5 HOH A 137 437 129 HOH HOH . E 5 HOH A 138 438 78 HOH HOH . E 5 HOH A 139 439 14 HOH HOH . E 5 HOH A 140 440 230 HOH HOH . E 5 HOH A 141 441 53 HOH HOH . E 5 HOH A 142 442 17 HOH HOH . E 5 HOH A 143 443 108 HOH HOH . E 5 HOH A 144 444 66 HOH HOH . E 5 HOH A 145 445 163 HOH HOH . E 5 HOH A 146 446 55 HOH HOH . E 5 HOH A 147 447 201 HOH HOH . E 5 HOH A 148 448 82 HOH HOH . E 5 HOH A 149 449 63 HOH HOH . E 5 HOH A 150 450 95 HOH HOH . E 5 HOH A 151 451 24 HOH HOH . E 5 HOH A 152 452 149 HOH HOH . E 5 HOH A 153 453 77 HOH HOH . E 5 HOH A 154 454 205 HOH HOH . E 5 HOH A 155 455 98 HOH HOH . E 5 HOH A 156 456 106 HOH HOH . E 5 HOH A 157 457 232 HOH HOH . E 5 HOH A 158 458 52 HOH HOH . E 5 HOH A 159 459 118 HOH HOH . E 5 HOH A 160 460 36 HOH HOH . E 5 HOH A 161 461 23 HOH HOH . E 5 HOH A 162 462 131 HOH HOH . E 5 HOH A 163 463 136 HOH HOH . E 5 HOH A 164 464 214 HOH HOH . E 5 HOH A 165 465 11 HOH HOH . E 5 HOH A 166 466 57 HOH HOH . E 5 HOH A 167 467 27 HOH HOH . E 5 HOH A 168 468 244 HOH HOH . E 5 HOH A 169 469 114 HOH HOH . E 5 HOH A 170 470 89 HOH HOH . E 5 HOH A 171 471 140 HOH HOH . E 5 HOH A 172 472 191 HOH HOH . E 5 HOH A 173 473 81 HOH HOH . E 5 HOH A 174 474 172 HOH HOH . E 5 HOH A 175 475 209 HOH HOH . E 5 HOH A 176 476 20 HOH HOH . E 5 HOH A 177 477 242 HOH HOH . E 5 HOH A 178 478 177 HOH HOH . E 5 HOH A 179 479 93 HOH HOH . E 5 HOH A 180 480 215 HOH HOH . E 5 HOH A 181 481 196 HOH HOH . E 5 HOH A 182 482 219 HOH HOH . E 5 HOH A 183 483 138 HOH HOH . E 5 HOH A 184 484 116 HOH HOH . E 5 HOH A 185 485 202 HOH HOH . E 5 HOH A 186 486 153 HOH HOH . E 5 HOH A 187 487 113 HOH HOH . E 5 HOH A 188 488 194 HOH HOH . E 5 HOH A 189 489 137 HOH HOH . E 5 HOH A 190 490 220 HOH HOH . E 5 HOH A 191 491 173 HOH HOH . E 5 HOH A 192 492 169 HOH HOH . E 5 HOH A 193 493 147 HOH HOH . E 5 HOH A 194 494 115 HOH HOH . E 5 HOH A 195 495 211 HOH HOH . E 5 HOH A 196 496 217 HOH HOH . E 5 HOH A 197 497 227 HOH HOH . E 5 HOH A 198 498 171 HOH HOH . E 5 HOH A 199 499 223 HOH HOH . E 5 HOH A 200 500 134 HOH HOH . E 5 HOH A 201 501 87 HOH HOH . E 5 HOH A 202 502 8 HOH HOH . E 5 HOH A 203 503 94 HOH HOH . E 5 HOH A 204 504 176 HOH HOH . E 5 HOH A 205 505 222 HOH HOH . E 5 HOH A 206 506 148 HOH HOH . E 5 HOH A 207 507 110 HOH HOH . E 5 HOH A 208 508 226 HOH HOH . E 5 HOH A 209 509 237 HOH HOH . E 5 HOH A 210 510 206 HOH HOH . E 5 HOH A 211 511 225 HOH HOH . E 5 HOH A 212 512 175 HOH HOH . E 5 HOH A 213 513 139 HOH HOH . E 5 HOH A 214 514 241 HOH HOH . E 5 HOH A 215 515 117 HOH HOH . E 5 HOH A 216 516 38 HOH HOH . E 5 HOH A 217 517 107 HOH HOH . E 5 HOH A 218 518 96 HOH HOH . E 5 HOH A 219 519 135 HOH HOH . E 5 HOH A 220 520 216 HOH HOH . E 5 HOH A 221 521 154 HOH HOH . E 5 HOH A 222 522 160 HOH HOH . E 5 HOH A 223 523 233 HOH HOH . E 5 HOH A 224 524 72 HOH HOH . E 5 HOH A 225 525 204 HOH HOH . E 5 HOH A 226 526 126 HOH HOH . E 5 HOH A 227 527 100 HOH HOH . E 5 HOH A 228 528 151 HOH HOH . E 5 HOH A 229 529 185 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 2.874 30.961 -37.565 1 52.41 ? C1 GOL 201 A 1 HETATM 2 O O1 GOL . . . C 3 4.141 31.591 -37.357 1 60.77 ? O1 GOL 201 A 1 HETATM 3 C C2 GOL . . . C 3 1.801 31.827 -36.922 1 48.57 ? C2 GOL 201 A 1 HETATM 4 O O2 GOL . . . C 3 1.426 32.862 -37.836 1 61.99 ? O2 GOL 201 A 1 HETATM 5 C C3 GOL . . . C 3 0.574 30.994 -36.576 1 49.57 ? C3 GOL 201 A 1 HETATM 6 O O3 GOL . . . C 3 -0.526 31.427 -37.379 1 60.26 ? O3 GOL 201 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #