data_6KWR # _model_server_result.job_id hiY9kd6T5pyusrHyO-bmog _model_server_result.datetime_utc '2024-11-28 06:14:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kwr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 6KWR # _exptl.entry_id 6KWR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.92 _cell.angle_gamma 90 _cell.entry_id 6KWR _cell.length_a 130.008 _cell.length_b 76.454 _cell.length_c 68.075 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KWR _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C O3' A 12 C A 700 1_555 C P DOC 13 C DOC 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.554 ? metalc ? metalc1 A OD2 ASP 233 A ASP 233 1_555 D MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.962 ? metalc ? metalc2 A NE2 HIS 271 A HIS 271 1_555 E ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc3 A NE2 HIS 273 A HIS 273 1_555 E ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc4 A SG CYS 282 A CYS 282 1_555 E ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc5 A OD1 ASP 330 A ASP 330 1_555 D MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc6 D MG MG . A MG 501 1_555 G O HOH . A HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc7 D MG MG . A MG 501 1_555 G O HOH . A HOH 661 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? hydrog WATSON-CRICK hydrog1 B N1 G 2 B G 583 1_555 B N3 C 17 B C 598 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N2 G 2 B G 583 1_555 B O2 C 17 B C 598 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O6 G 2 B G 583 1_555 B N4 C 17 B C 598 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N1 G 3 B G 584 1_555 B N3 C 16 B C 597 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N2 G 3 B G 584 1_555 B O2 C 16 B C 597 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B O6 G 3 B G 584 1_555 B N4 C 16 B C 597 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N1 A 4 B A 585 1_555 B N3 U 15 B U 596 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N6 A 4 B A 585 1_555 B O4 U 15 B U 596 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N1 G 5 B G 586 1_555 B N3 C 14 B C 595 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N2 G 5 B G 586 1_555 B O2 C 14 B C 595 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B O6 G 5 B G 586 1_555 B N4 C 14 B C 595 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N1 A 6 B A 587 1_555 B N3 U 13 B U 594 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N6 A 6 B A 587 1_555 B O4 U 13 B U 594 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_28_PAIR hydrog14 B N3 U 7 B U 588 1_555 B O6 G 12 B G 593 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_28_PAIR hydrog15 B O2 U 7 B U 588 1_555 B N1 G 12 B G 593 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-A MISPAIR' hydrog16 B N2 G 8 B G 589 1_555 B N3 A 11 B A 592 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B N1 G 20 B G 601 1_555 C N3 DOC 13 C DOC 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B N2 G 20 B G 601 1_555 C O2 DOC 13 C DOC 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B O6 G 20 B G 601 1_555 C N4 DOC 13 C DOC 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B N3 U 21 B U 602 1_555 C N1 A 12 C A 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B O4 U 21 B U 602 1_555 C N6 A 12 C A 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B N3 C 22 B C 603 1_555 C N1 G 11 C G 699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 B N4 C 22 B C 603 1_555 C O6 G 11 C G 699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 B O2 C 22 B C 603 1_555 C N2 G 11 C G 699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 B N3 U 23 B U 604 1_555 C N1 A 10 C A 698 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 B O4 U 23 B U 604 1_555 C N6 A 10 C A 698 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 B N3 C 24 B C 605 1_555 C N1 G 9 C G 697 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 B N4 C 24 B C 605 1_555 C O6 G 9 C G 697 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 B O2 C 24 B C 605 1_555 C N2 G 9 C G 697 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 B N3 U 25 B U 606 1_555 C N1 A 8 C A 696 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 B O4 U 25 B U 606 1_555 C N6 A 8 C A 696 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'C-G PAIR' hydrog32 B O2 C 26 B C 607 1_555 C N2 G 7 C G 695 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6KWR _atom_sites.fract_transf_matrix[1][1] 0.007692 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000662 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01308 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014744 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG A 1 501 1 MG MG . E 5 ZN A 1 502 2001 ZN ZN . F 6 DCT A 1 503 0 DCT DCT . G 7 HOH A 1 601 163 HOH HOH . G 7 HOH A 2 602 143 HOH HOH . G 7 HOH A 3 603 100 HOH HOH . G 7 HOH A 4 604 127 HOH HOH . G 7 HOH A 5 605 160 HOH HOH . G 7 HOH A 6 606 6 HOH HOH . G 7 HOH A 7 607 117 HOH HOH . G 7 HOH A 8 608 20 HOH HOH . G 7 HOH A 9 609 155 HOH HOH . G 7 HOH A 10 610 164 HOH HOH . G 7 HOH A 11 611 102 HOH HOH . G 7 HOH A 12 612 109 HOH HOH . G 7 HOH A 13 613 27 HOH HOH . G 7 HOH A 14 614 39 HOH HOH . G 7 HOH A 15 615 136 HOH HOH . G 7 HOH A 16 616 34 HOH HOH . G 7 HOH A 17 617 41 HOH HOH . G 7 HOH A 18 618 51 HOH HOH . G 7 HOH A 19 619 119 HOH HOH . G 7 HOH A 20 620 104 HOH HOH . G 7 HOH A 21 621 124 HOH HOH . G 7 HOH A 22 622 139 HOH HOH . G 7 HOH A 23 623 44 HOH HOH . G 7 HOH A 24 624 128 HOH HOH . G 7 HOH A 25 625 50 HOH HOH . G 7 HOH A 26 626 132 HOH HOH . G 7 HOH A 27 627 121 HOH HOH . G 7 HOH A 28 628 103 HOH HOH . G 7 HOH A 29 629 38 HOH HOH . G 7 HOH A 30 630 108 HOH HOH . G 7 HOH A 31 631 36 HOH HOH . G 7 HOH A 32 632 35 HOH HOH . G 7 HOH A 33 633 9 HOH HOH . G 7 HOH A 34 634 159 HOH HOH . G 7 HOH A 35 635 140 HOH HOH . G 7 HOH A 36 636 152 HOH HOH . G 7 HOH A 37 637 11 HOH HOH . G 7 HOH A 38 638 19 HOH HOH . G 7 HOH A 39 639 125 HOH HOH . G 7 HOH A 40 640 131 HOH HOH . G 7 HOH A 41 641 16 HOH HOH . G 7 HOH A 42 642 115 HOH HOH . G 7 HOH A 43 643 129 HOH HOH . G 7 HOH A 44 644 2 HOH HOH . G 7 HOH A 45 645 45 HOH HOH . G 7 HOH A 46 646 31 HOH HOH . G 7 HOH A 47 647 135 HOH HOH . G 7 HOH A 48 648 158 HOH HOH . G 7 HOH A 49 649 13 HOH HOH . G 7 HOH A 50 650 118 HOH HOH . G 7 HOH A 51 651 157 HOH HOH . G 7 HOH A 52 652 105 HOH HOH . G 7 HOH A 53 653 1 HOH HOH . G 7 HOH A 54 654 42 HOH HOH . G 7 HOH A 55 655 23 HOH HOH . G 7 HOH A 56 656 24 HOH HOH . G 7 HOH A 57 657 107 HOH HOH . G 7 HOH A 58 658 113 HOH HOH . G 7 HOH A 59 659 114 HOH HOH . G 7 HOH A 60 660 101 HOH HOH . G 7 HOH A 61 661 126 HOH HOH . G 7 HOH A 62 662 144 HOH HOH . G 7 HOH A 63 663 32 HOH HOH . G 7 HOH A 64 664 130 HOH HOH . G 7 HOH A 65 665 106 HOH HOH . G 7 HOH A 66 666 112 HOH HOH . G 7 HOH A 67 667 156 HOH HOH . G 7 HOH A 68 668 137 HOH HOH . G 7 HOH A 69 669 150 HOH HOH . G 7 HOH A 70 670 154 HOH HOH . G 7 HOH A 71 671 99 HOH HOH . G 7 HOH A 72 672 141 HOH HOH . G 7 HOH A 73 673 58 HOH HOH . G 7 HOH A 74 674 123 HOH HOH . G 7 HOH A 75 675 134 HOH HOH . G 7 HOH A 76 676 142 HOH HOH . G 7 HOH A 77 677 138 HOH HOH . G 7 HOH A 78 678 111 HOH HOH . G 7 HOH A 79 679 26 HOH HOH . G 7 HOH A 80 680 33 HOH HOH . G 7 HOH A 81 681 110 HOH HOH . G 7 HOH A 82 682 37 HOH HOH . H 7 HOH B 1 701 120 HOH HOH . H 7 HOH B 2 702 165 HOH HOH . H 7 HOH B 3 703 12 HOH HOH . H 7 HOH B 4 704 153 HOH HOH . H 7 HOH B 5 705 49 HOH HOH . H 7 HOH B 6 706 116 HOH HOH . H 7 HOH B 7 707 162 HOH HOH . H 7 HOH B 8 708 145 HOH HOH . H 7 HOH B 9 709 168 HOH HOH . H 7 HOH B 10 710 62 HOH HOH . H 7 HOH B 11 711 146 HOH HOH . H 7 HOH B 12 712 29 HOH HOH . H 7 HOH B 13 713 167 HOH HOH . H 7 HOH B 14 714 148 HOH HOH . H 7 HOH B 15 715 47 HOH HOH . H 7 HOH B 16 716 166 HOH HOH . H 7 HOH B 17 717 149 HOH HOH . H 7 HOH B 18 718 21 HOH HOH . H 7 HOH B 19 719 147 HOH HOH . H 7 HOH B 20 720 151 HOH HOH . I 7 HOH C 1 801 122 HOH HOH . I 7 HOH C 2 802 161 HOH HOH . I 7 HOH C 3 803 133 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 10.725 _atom_site.Cartn_y -11.49 _atom_site.Cartn_z 97.095 _atom_site.occupancy 0.89 _atom_site.B_iso_or_equiv 63.66 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 33 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 1 #