data_6KWX # _model_server_result.job_id mhOBkdyrTdwtmngZy7yhmA _model_server_result.datetime_utc '2024-11-26 04:31:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kwx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1901}' # _entry.id 6KWX # _exptl.entry_id 6KWX _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 819.995 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(1~{S},2~{R},3~{R},4~{S},5~{S},6~{R})-2-[oxidanyl(phosphonooxy)phosphoryl]oxy-3,4,5,6-tetraphosphonooxy-cyclohexyl] phosphono hydrogen phosphate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6KWX _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KWX _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H20 O30 P8' _chem_comp.formula_weight 819.995 _chem_comp.id K0W _chem_comp.mon_nstd_flag . _chem_comp.name '[(1~{S},2~{R},3~{R},4~{S},5~{S},6~{R})-2-[oxidanyl(phosphonooxy)phosphoryl]oxy-3,4,5,6-tetraphosphonooxy-cyclohexyl] phosphono hydrogen phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O26 PA6 K0W doub 225 n n O71 PB1 K0W doub 226 n n O36 PA6 K0W sing 227 n n PA6 O46 K0W sing 228 n n PA6 O16 K0W sing 229 n n O61 PB1 K0W sing 230 n n O51 PB1 K0W sing 231 n n PB1 O76 K0W sing 232 n n O21 PA1 K0W doub 233 n n O16 C1 K0W sing 234 n n O22 PA2 K0W doub 235 n n O76 PA1 K0W sing 236 n n O32 PA2 K0W sing 237 n n PA1 O31 K0W sing 238 n n PA1 O11 K0W sing 239 n n C1 C6 K0W sing 240 n n C1 C2 K0W sing 241 n n PA2 O12 K0W sing 242 n n PA2 O42 K0W sing 243 n n O55 PB5 K0W doub 244 n n C6 O11 K0W sing 245 n n C6 C5 K0W sing 246 n n O12 C2 K0W sing 247 n n C2 C3 K0W sing 248 n n O35 PA5 K0W doub 249 n n O75 PB5 K0W sing 250 n n PB5 O65 K0W sing 251 n n PB5 O77 K0W sing 252 n n C5 O15 K0W sing 253 n n C5 C4 K0W sing 254 n n O33 PA3 K0W doub 255 n n PA5 O15 K0W sing 256 n n PA5 O77 K0W sing 257 n n PA5 O25 K0W sing 258 n n C3 C4 K0W sing 259 n n C3 O13 K0W sing 260 n n C4 O14 K0W sing 261 n n O13 PA3 K0W sing 262 n n PA3 O43 K0W sing 263 n n PA3 O23 K0W sing 264 n n O14 PA4 K0W sing 265 n n PA4 O44 K0W doub 266 n n PA4 O24 K0W sing 267 n n PA4 O34 K0W sing 268 n n C1 H1 K0W sing 269 n n C2 H2 K0W sing 270 n n C3 H3 K0W sing 271 n n C4 H4 K0W sing 272 n n C5 H5 K0W sing 273 n n C6 H6 K0W sing 274 n n O23 H7 K0W sing 275 n n O24 H8 K0W sing 276 n n O25 H9 K0W sing 277 n n O31 H10 K0W sing 278 n n O32 H11 K0W sing 279 n n O34 H12 K0W sing 280 n n O36 H13 K0W sing 281 n n O42 H14 K0W sing 282 n n O43 H15 K0W sing 283 n n O46 H16 K0W sing 284 n n O51 H17 K0W sing 285 n n O61 H18 K0W sing 286 n n O65 H19 K0W sing 287 n n O75 H20 K0W sing 288 n n # _atom_sites.entry_id 6KWX _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K0W A 1 1901 1901 K0W K0W . C 3 IHP A 1 1902 1902 IHP I6P . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 K0W . . . B 2 118.867 94.098 98.071 1 118.97 ? C1 K0W 1901 A 1 HETATM 2 C C2 K0W . . . B 2 118.52 94.128 99.561 1 118.97 ? C2 K0W 1901 A 1 HETATM 3 C C3 K0W . . . B 2 117.084 93.678 99.87 1 118.97 ? C3 K0W 1901 A 1 HETATM 4 C C4 K0W . . . B 2 116.616 92.38 99.181 1 118.97 ? C4 K0W 1901 A 1 HETATM 5 C C5 K0W . . . B 2 117.505 91.845 98.053 1 118.97 ? C5 K0W 1901 A 1 HETATM 6 P PA1 K0W . . . B 2 117.866 93.503 94.791 1 118.97 ? PA1 K0W 1901 A 1 HETATM 7 P PA2 K0W . . . B 2 119.427 95.933 101.264 1 118.97 ? PA2 K0W 1901 A 1 HETATM 8 P PA3 K0W . . . B 2 117.409 92.443 102.281 1 118.97 ? PA3 K0W 1901 A 1 HETATM 9 P PA4 K0W . . . B 2 114.029 91.93 99.166 1 118.97 ? PA4 K0W 1901 A 1 HETATM 10 P PA5 K0W . . . B 2 116.974 89.739 96.511 1 118.97 ? PA5 K0W 1901 A 1 HETATM 11 P PA6 K0W . . . B 2 121.049 95.511 97.816 1 118.97 ? PA6 K0W 1901 A 1 HETATM 12 P PB1 K0W . . . B 2 120.17 91.828 94.235 1 118.97 ? PB1 K0W 1901 A 1 HETATM 13 P PB5 K0W . . . B 2 116.406 89.631 93.599 1 118.97 ? PB5 K0W 1901 A 1 HETATM 14 C C6 K0W . . . B 2 118.261 92.936 97.272 1 118.97 ? C6 K0W 1901 A 1 HETATM 15 O O11 K0W . . . B 2 117.372 93.51 96.356 1 118.97 ? O11 K0W 1901 A 1 HETATM 16 O O12 K0W . . . B 2 118.575 95.469 99.941 1 118.97 ? O12 K0W 1901 A 1 HETATM 17 O O13 K0W . . . B 2 116.897 93.649 101.273 1 118.97 ? O13 K0W 1901 A 1 HETATM 18 O O14 K0W . . . B 2 115.379 92.662 98.588 1 118.97 ? O14 K0W 1901 A 1 HETATM 19 O O15 K0W . . . B 2 116.638 91.228 97.137 1 118.97 ? O15 K0W 1901 A 1 HETATM 20 O O16 K0W . . . B 2 120.261 94.073 97.929 1 118.97 ? O16 K0W 1901 A 1 HETATM 21 O O21 K0W . . . B 2 118.863 94.615 94.601 1 118.97 ? O21 K0W 1901 A 1 HETATM 22 O O22 K0W . . . B 2 120.004 97.28 100.938 1 118.97 ? O22 K0W 1901 A 1 HETATM 23 O O23 K0W . . . B 2 116.41 91.316 102.302 1 118.97 ? O23 K0W 1901 A 1 HETATM 24 O O24 K0W . . . B 2 113.131 91.552 98.014 1 118.97 ? O24 K0W 1901 A 1 HETATM 25 O O25 K0W . . . B 2 116.652 88.694 97.547 1 118.97 ? O25 K0W 1901 A 1 HETATM 26 O O26 K0W . . . B 2 121.99 95.501 96.64 1 118.97 ? O26 K0W 1901 A 1 HETATM 27 O O31 K0W . . . B 2 116.681 93.742 93.891 1 118.97 ? O31 K0W 1901 A 1 HETATM 28 O O32 K0W . . . B 2 120.545 94.97 101.565 1 118.97 ? O32 K0W 1901 A 1 HETATM 29 O O33 K0W . . . B 2 118.759 91.879 101.909 1 118.97 ? O33 K0W 1901 A 1 HETATM 30 O O34 K0W . . . B 2 113.305 92.89 100.076 1 118.97 ? O34 K0W 1901 A 1 HETATM 31 O O35 K0W . . . B 2 118.439 89.648 96.174 1 118.97 ? O35 K0W 1901 A 1 HETATM 32 O O36 K0W . . . B 2 121.834 95.758 99.076 1 118.97 ? O36 K0W 1901 A 1 HETATM 33 O O42 K0W . . . B 2 118.508 96.021 102.45 1 118.97 ? O42 K0W 1901 A 1 HETATM 34 O O43 K0W . . . B 2 117.501 93.03 103.664 1 118.97 ? O43 K0W 1901 A 1 HETATM 35 O O44 K0W . . . B 2 114.425 90.696 99.936 1 118.97 ? O44 K0W 1901 A 1 HETATM 36 O O46 K0W . . . B 2 120.04 96.615 97.636 1 118.97 ? O46 K0W 1901 A 1 HETATM 37 O O51 K0W . . . B 2 120.465 90.453 93.701 1 118.97 ? O51 K0W 1901 A 1 HETATM 38 O O55 K0W . . . B 2 117.852 89.287 93.363 1 118.97 ? O55 K0W 1901 A 1 HETATM 39 O O61 K0W . . . B 2 120.957 92.034 95.504 1 118.97 ? O61 K0W 1901 A 1 HETATM 40 O O65 K0W . . . B 2 115.553 88.722 92.749 1 118.97 ? O65 K0W 1901 A 1 HETATM 41 O O71 K0W . . . B 2 120.572 92.849 93.213 1 118.97 ? O71 K0W 1901 A 1 HETATM 42 O O75 K0W . . . B 2 116.138 91.045 93.164 1 118.97 ? O75 K0W 1901 A 1 HETATM 43 O O76 K0W . . . B 2 118.558 92.038 94.492 1 118.97 ? O76 K0W 1901 A 1 HETATM 44 O O77 K0W . . . B 2 116.011 89.469 95.195 1 118.97 ? O77 K0W 1901 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 44 #