data_6KX0 # _model_server_result.job_id pa-MBYz8r6XNXQyl-TPZVQ _model_server_result.datetime_utc '2025-06-27 17:22:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kx0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 6KX0 # _exptl.entry_id 6KX0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.83 _cell.angle_gamma 90 _cell.entry_id 6KX0 _cell.length_a 159.86 _cell.length_b 40.1 _cell.length_c 67.78 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KX0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 41 A CYS 21 1_555 A SG CYS 117 A CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 162 A CYS 142 1_555 A SG CYS 217 A CYS 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 B SG CYS 42 B CYS 23 1_555 B SG CYS 112 B CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 B SG CYS 159 B CYS 140 1_555 B SG CYS 219 B CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 334 n n C C2 TRS sing 335 n n C C3 TRS sing 336 n n C N TRS sing 337 n n C1 O1 TRS sing 338 n n C1 H11 TRS sing 339 n n C1 H12 TRS sing 340 n n C2 O2 TRS sing 341 n n C2 H21 TRS sing 342 n n C2 H22 TRS sing 343 n n C3 O3 TRS sing 344 n n C3 H31 TRS sing 345 n n C3 H32 TRS sing 346 n n N HN1 TRS sing 347 n n N HN2 TRS sing 348 n n N HN3 TRS sing 349 n n O1 HO1 TRS sing 350 n n O2 HO2 TRS sing 351 n n O3 HO3 TRS sing 352 n n # _atom_sites.entry_id 6KX0 _atom_sites.fract_transf_matrix[1][1] 0.006255 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001084 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024938 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014973 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 TRS A 1 301 1 TRS TRS . D 3 TRS A 1 302 2 TRS TRS . E 4 HOH A 1 401 4 HOH HOH . E 4 HOH A 2 402 6 HOH HOH . E 4 HOH A 3 403 17 HOH HOH . E 4 HOH A 4 404 7 HOH HOH . E 4 HOH A 5 405 19 HOH HOH . E 4 HOH A 6 406 14 HOH HOH . E 4 HOH A 7 407 21 HOH HOH . E 4 HOH A 8 408 5 HOH HOH . E 4 HOH A 9 409 10 HOH HOH . E 4 HOH A 10 410 39 HOH HOH . E 4 HOH A 11 411 40 HOH HOH . E 4 HOH A 12 412 35 HOH HOH . E 4 HOH A 13 413 22 HOH HOH . F 4 HOH B 1 301 13 HOH HOH . F 4 HOH B 2 302 32 HOH HOH . F 4 HOH B 3 303 2 HOH HOH . F 4 HOH B 4 304 23 HOH HOH . F 4 HOH B 5 305 3 HOH HOH . F 4 HOH B 6 306 16 HOH HOH . F 4 HOH B 7 307 25 HOH HOH . F 4 HOH B 8 308 9 HOH HOH . F 4 HOH B 9 309 29 HOH HOH . F 4 HOH B 10 310 8 HOH HOH . F 4 HOH B 11 311 1 HOH HOH . F 4 HOH B 12 312 41 HOH HOH . F 4 HOH B 13 313 33 HOH HOH . F 4 HOH B 14 314 24 HOH HOH . F 4 HOH B 15 315 30 HOH HOH . F 4 HOH B 16 316 18 HOH HOH . F 4 HOH B 17 317 11 HOH HOH . F 4 HOH B 18 318 20 HOH HOH . F 4 HOH B 19 319 27 HOH HOH . F 4 HOH B 20 320 34 HOH HOH . F 4 HOH B 21 321 15 HOH HOH . F 4 HOH B 22 322 12 HOH HOH . F 4 HOH B 23 323 36 HOH HOH . F 4 HOH B 24 324 38 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . C 3 -28.391 7.969 49.196 1 81.13 ? C TRS 301 A 1 HETATM 2 C C1 TRS . . . C 3 -27.821 9.151 48.411 1 73 ? C1 TRS 301 A 1 HETATM 3 C C2 TRS . . . C 3 -28.571 6.74 48.312 1 69.29 ? C2 TRS 301 A 1 HETATM 4 C C3 TRS . . . C 3 -29.723 8.332 49.843 1 79.97 ? C3 TRS 301 A 1 HETATM 5 N N TRS . . . C 3 -27.452 7.631 50.268 1 87.5 ? N TRS 301 A 1 HETATM 6 O O1 TRS . . . C 3 -28.793 9.692 47.54 1 56.12 ? O1 TRS 301 A 1 HETATM 7 O O2 TRS . . . C 3 -29.284 5.759 49.039 1 70.61 ? O2 TRS 301 A 1 HETATM 8 O O3 TRS . . . C 3 -29.499 8.866 51.13 1 85.37 ? O3 TRS 301 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 1037 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 8 #