data_6KX3
#
_model_server_result.job_id            9TkBWJPAfQqlnthv0t95gA 
_model_server_result.datetime_utc      '2024-10-11 06:25:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6kx3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":202}' 
#
_entry.id    6KX3 
#
_exptl.entry_id    6KX3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              252.286 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'prop-2-enyl (3R)-1,1-bis(oxidanylidene)-2,3-dihydro-1-benzothiophene-3-carboxylate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6KX3 
_cell.length_a            91.784 
_cell.length_b            91.784 
_cell.length_c            55.813 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6KX3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             107 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              107 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            C 
_struct_conn.ptnr2_label_atom_id            C8 
_struct_conn.ptnr2_label_comp_id            8ZO 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             8ZO 
_struct_conn.ptnr2_auth_seq_id              202 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.677 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C12 H12 O4 S' 
_chem_comp.formula_weight    252.286 
_chem_comp.id                8ZO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'prop-2-enyl (3R)-1,1-bis(oxidanylidene)-2,3-dihydro-1-benzothiophene-3-carboxylate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O16 S9 8ZO doub 1 n n 
C4 C5 8ZO doub 2 n y 
C4 C3 8ZO sing 3 n y 
S9 C5 8ZO sing 4 n n 
S9 O17 8ZO doub 5 n n 
S9 C8 8ZO sing 6 n n 
C5 C6 8ZO sing 7 n y 
C3 C2 8ZO doub 8 n y 
C2 C1 8ZO sing 9 n y 
C6 C1 8ZO doub 10 n y 
C6 C7 8ZO sing 11 n n 
C8 C7 8ZO sing 12 n n 
C7 C10 8ZO sing 13 n n 
C13 C14 8ZO sing 14 n n 
C13 O12 8ZO sing 15 n n 
C15 C14 8ZO doub 16 n n 
C10 O12 8ZO sing 17 n n 
C10 O11 8ZO doub 18 n n 
C1 H1 8ZO sing 19 n n 
C2 H2 8ZO sing 20 n n 
C3 H3 8ZO sing 21 n n 
C4 H4 8ZO sing 22 n n 
C7 H5 8ZO sing 23 n n 
C8 H6 8ZO sing 24 n n 
C8 H7 8ZO sing 25 n n 
C13 H8 8ZO sing 26 n n 
C13 H9 8ZO sing 27 n n 
C14 H10 8ZO sing 28 n n 
C15 H12 8ZO sing 29 n n 
C15 H13 8ZO sing 30 n n 
#
_atom_sites.entry_id                     6KX3 
_atom_sites.fract_transf_matrix[1][1]    0.010895 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010895 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017917 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GDP A 1 201 200 GDP GDP . 
C 3 8ZO A 1 202 999 8ZO UNK . 
D 4 HOH A 1 301 77 HOH HOH . 
D 4 HOH A 2 302 64 HOH HOH . 
D 4 HOH A 3 303 60 HOH HOH . 
D 4 HOH A 4 304 43 HOH HOH . 
D 4 HOH A 5 305 47 HOH HOH . 
D 4 HOH A 6 306 70 HOH HOH . 
D 4 HOH A 7 307 35 HOH HOH . 
D 4 HOH A 8 308 17 HOH HOH . 
D 4 HOH A 9 309 4 HOH HOH . 
D 4 HOH A 10 310 29 HOH HOH . 
D 4 HOH A 11 311 15 HOH HOH . 
D 4 HOH A 12 312 30 HOH HOH . 
D 4 HOH A 13 313 79 HOH HOH . 
D 4 HOH A 14 314 34 HOH HOH . 
D 4 HOH A 15 315 22 HOH HOH . 
D 4 HOH A 16 316 23 HOH HOH . 
D 4 HOH A 17 317 33 HOH HOH . 
D 4 HOH A 18 318 25 HOH HOH . 
D 4 HOH A 19 319 27 HOH HOH . 
D 4 HOH A 20 320 57 HOH HOH . 
D 4 HOH A 21 321 28 HOH HOH . 
D 4 HOH A 22 322 10 HOH HOH . 
D 4 HOH A 23 323 13 HOH HOH . 
D 4 HOH A 24 324 21 HOH HOH . 
D 4 HOH A 25 325 37 HOH HOH . 
D 4 HOH A 26 326 16 HOH HOH . 
D 4 HOH A 27 327 65 HOH HOH . 
D 4 HOH A 28 328 19 HOH HOH . 
D 4 HOH A 29 329 14 HOH HOH . 
D 4 HOH A 30 330 1 HOH HOH . 
D 4 HOH A 31 331 55 HOH HOH . 
D 4 HOH A 32 332 18 HOH HOH . 
D 4 HOH A 33 333 46 HOH HOH . 
D 4 HOH A 34 334 31 HOH HOH . 
D 4 HOH A 35 335 38 HOH HOH . 
D 4 HOH A 36 336 2 HOH HOH . 
D 4 HOH A 37 337 56 HOH HOH . 
D 4 HOH A 38 338 42 HOH HOH . 
D 4 HOH A 39 339 32 HOH HOH . 
D 4 HOH A 40 340 20 HOH HOH . 
D 4 HOH A 41 341 54 HOH HOH . 
D 4 HOH A 42 342 7 HOH HOH . 
D 4 HOH A 43 343 49 HOH HOH . 
D 4 HOH A 44 344 8 HOH HOH . 
D 4 HOH A 45 345 5 HOH HOH . 
D 4 HOH A 46 346 82 HOH HOH . 
D 4 HOH A 47 347 81 HOH HOH . 
D 4 HOH A 48 348 69 HOH HOH . 
D 4 HOH A 49 349 9 HOH HOH . 
D 4 HOH A 50 350 24 HOH HOH . 
D 4 HOH A 51 351 44 HOH HOH . 
D 4 HOH A 52 352 52 HOH HOH . 
D 4 HOH A 53 353 6 HOH HOH . 
D 4 HOH A 54 354 3 HOH HOH . 
D 4 HOH A 55 355 76 HOH HOH . 
D 4 HOH A 56 356 12 HOH HOH . 
D 4 HOH A 57 357 58 HOH HOH . 
D 4 HOH A 58 358 41 HOH HOH . 
D 4 HOH A 59 359 11 HOH HOH . 
D 4 HOH A 60 360 85 HOH HOH . 
D 4 HOH A 61 361 75 HOH HOH . 
D 4 HOH A 62 362 61 HOH HOH . 
D 4 HOH A 63 363 51 HOH HOH . 
D 4 HOH A 64 364 45 HOH HOH . 
D 4 HOH A 65 365 36 HOH HOH . 
D 4 HOH A 66 366 53 HOH HOH . 
D 4 HOH A 67 367 83 HOH HOH . 
D 4 HOH A 68 368 40 HOH HOH . 
D 4 HOH A 69 369 63 HOH HOH . 
D 4 HOH A 70 370 50 HOH HOH . 
D 4 HOH A 71 371 84 HOH HOH . 
D 4 HOH A 72 372 78 HOH HOH . 
D 4 HOH A 73 373 74 HOH HOH . 
D 4 HOH A 74 374 72 HOH HOH . 
D 4 HOH A 75 375 48 HOH HOH . 
D 4 HOH A 76 376 62 HOH HOH . 
D 4 HOH A 77 377 59 HOH HOH . 
D 4 HOH A 78 378 71 HOH HOH . 
D 4 HOH A 79 379 26 HOH HOH . 
D 4 HOH A 80 380 68 HOH HOH . 
D 4 HOH A 81 381 39 HOH HOH . 
D 4 HOH A 82 382 80 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 8ZO . . . C 3 -7.844 -27.407 2.408 0.31 45.63 ? C1 8ZO 202 A 1 
HETATM 2 C C2 8ZO . . . C 3 -7.031 -26.39 1.941 0.78 46.14 ? C2 8ZO 202 A 1 
HETATM 3 C C3 8ZO . . . C 3 -5.885 -26.695 1.223 0.35 43.15 ? C3 8ZO 202 A 1 
HETATM 4 C C4 8ZO . . . C 3 -5.567 -28.024 0.99 1 48.75 ? C4 8ZO 202 A 1 
HETATM 5 C C5 8ZO . . . C 3 -6.378 -29.049 1.455 1 43.39 ? C5 8ZO 202 A 1 
HETATM 6 C C6 8ZO . . . C 3 -7.544 -28.741 2.178 1 45.51 ? C6 8ZO 202 A 1 
HETATM 7 C C7 8ZO . . . C 3 -8.296 -30.095 2.606 1 45.43 ? C7 8ZO 202 A 1 
HETATM 8 C C8 8ZO . . . C 3 -7.378 -31.308 2.342 0.71 46.75 ? C8 8ZO 202 A 1 
HETATM 9 S S9 8ZO . . . C 3 -6.158 -30.721 1.272 0.73 46.44 ? S9 8ZO 202 A 1 
HETATM 10 C C10 8ZO . . . C 3 -8.612 -29.98 4.043 1 54.64 ? C10 8ZO 202 A 1 
HETATM 11 O O11 8ZO . . . C 3 -7.775 -30.228 4.849 1 53.68 ? O11 8ZO 202 A 1 
HETATM 12 O O12 8ZO . . . C 3 -9.89 -29.564 4.461 1 55.14 ? O12 8ZO 202 A 1 
HETATM 13 C C13 8ZO . . . C 3 -9.939 -28.285 5.045 1 58.12 ? C13 8ZO 202 A 1 
HETATM 14 C C14 8ZO . . . C 3 -10.679 -27.302 4.133 1 50.18 ? C14 8ZO 202 A 1 
HETATM 15 C C15 8ZO . . . C 3 -10.296 -25.842 4.388 1 48.8 ? C15 8ZO 202 A 1 
HETATM 16 O O16 8ZO . . . C 3 -6.452 -31.193 -0.276 0.48 40.56 ? O16 8ZO 202 A 1 
HETATM 17 O O17 8ZO . . . C 3 -4.658 -31.164 1.799 0.37 43.64 ? O17 8ZO 202 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           17 
#