data_6KXD # _model_server_result.job_id 3zQWXOR4crNwa2GQ0jAnAw _model_server_result.datetime_utc '2024-11-26 22:05:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kxd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 6KXD # _exptl.entry_id 6KXD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6KXD _cell.length_a 67.603 _cell.length_b 67.603 _cell.length_c 261.781 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KXD _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 275 n n P O2 PO4 sing 276 n n P O3 PO4 sing 277 n n P O4 PO4 sing 278 n n # _atom_sites.entry_id 6KXD _atom_sites.fract_transf_matrix[1][1] 0.014792 _atom_sites.fract_transf_matrix[1][2] 0.00854 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017081 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00382 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PO4 B 1 401 1 PO4 PO4 . D 4 EDO B 1 402 1 EDO EDO . E 5 ACT B 1 403 1 ACT ACT . F 6 HOH A 1 501 34 HOH HOH . F 6 HOH A 2 502 63 HOH HOH . F 6 HOH A 3 503 133 HOH HOH . F 6 HOH A 4 504 148 HOH HOH . F 6 HOH A 5 505 151 HOH HOH . F 6 HOH A 6 506 110 HOH HOH . F 6 HOH A 7 507 126 HOH HOH . F 6 HOH A 8 508 137 HOH HOH . F 6 HOH A 9 509 46 HOH HOH . F 6 HOH A 10 510 129 HOH HOH . F 6 HOH A 11 511 116 HOH HOH . F 6 HOH A 12 512 115 HOH HOH . F 6 HOH A 13 513 132 HOH HOH . F 6 HOH A 14 514 14 HOH HOH . F 6 HOH A 15 515 40 HOH HOH . F 6 HOH A 16 516 147 HOH HOH . F 6 HOH A 17 517 54 HOH HOH . F 6 HOH A 18 518 47 HOH HOH . F 6 HOH A 19 519 66 HOH HOH . F 6 HOH A 20 520 15 HOH HOH . F 6 HOH A 21 521 52 HOH HOH . F 6 HOH A 22 522 108 HOH HOH . F 6 HOH A 23 523 128 HOH HOH . F 6 HOH A 24 524 130 HOH HOH . F 6 HOH A 25 525 145 HOH HOH . F 6 HOH A 26 526 22 HOH HOH . F 6 HOH A 27 527 135 HOH HOH . F 6 HOH A 28 528 112 HOH HOH . F 6 HOH A 29 529 150 HOH HOH . F 6 HOH A 30 530 44 HOH HOH . F 6 HOH A 31 531 140 HOH HOH . F 6 HOH A 32 532 109 HOH HOH . F 6 HOH A 33 533 35 HOH HOH . F 6 HOH A 34 534 28 HOH HOH . F 6 HOH A 35 535 59 HOH HOH . F 6 HOH A 36 536 37 HOH HOH . F 6 HOH A 37 537 8 HOH HOH . F 6 HOH A 38 538 25 HOH HOH . F 6 HOH A 39 539 42 HOH HOH . F 6 HOH A 40 540 143 HOH HOH . F 6 HOH A 41 541 19 HOH HOH . F 6 HOH A 42 542 64 HOH HOH . F 6 HOH A 43 543 117 HOH HOH . F 6 HOH A 44 544 144 HOH HOH . F 6 HOH A 45 545 56 HOH HOH . F 6 HOH A 46 546 23 HOH HOH . F 6 HOH A 47 547 86 HOH HOH . F 6 HOH A 48 548 141 HOH HOH . F 6 HOH A 49 549 58 HOH HOH . F 6 HOH A 50 550 61 HOH HOH . F 6 HOH A 51 551 106 HOH HOH . F 6 HOH A 52 552 120 HOH HOH . F 6 HOH A 53 553 49 HOH HOH . F 6 HOH A 54 554 118 HOH HOH . F 6 HOH A 55 555 62 HOH HOH . F 6 HOH A 56 556 149 HOH HOH . F 6 HOH A 57 557 7 HOH HOH . F 6 HOH A 58 558 38 HOH HOH . F 6 HOH A 59 559 146 HOH HOH . F 6 HOH A 60 560 152 HOH HOH . F 6 HOH A 61 561 134 HOH HOH . F 6 HOH A 62 562 74 HOH HOH . F 6 HOH A 63 563 24 HOH HOH . F 6 HOH A 64 564 41 HOH HOH . F 6 HOH A 65 565 131 HOH HOH . F 6 HOH A 66 566 122 HOH HOH . F 6 HOH A 67 567 103 HOH HOH . F 6 HOH A 68 568 29 HOH HOH . F 6 HOH A 69 569 139 HOH HOH . F 6 HOH A 70 570 136 HOH HOH . F 6 HOH A 71 571 119 HOH HOH . F 6 HOH A 72 572 76 HOH HOH . F 6 HOH A 73 573 142 HOH HOH . G 6 HOH B 1 501 99 HOH HOH . G 6 HOH B 2 502 81 HOH HOH . G 6 HOH B 3 503 138 HOH HOH . G 6 HOH B 4 504 88 HOH HOH . G 6 HOH B 5 505 98 HOH HOH . G 6 HOH B 6 506 91 HOH HOH . G 6 HOH B 7 507 89 HOH HOH . G 6 HOH B 8 508 32 HOH HOH . G 6 HOH B 9 509 53 HOH HOH . G 6 HOH B 10 510 51 HOH HOH . G 6 HOH B 11 511 78 HOH HOH . G 6 HOH B 12 512 153 HOH HOH . G 6 HOH B 13 513 94 HOH HOH . G 6 HOH B 14 514 121 HOH HOH . G 6 HOH B 15 515 27 HOH HOH . G 6 HOH B 16 516 100 HOH HOH . G 6 HOH B 17 517 154 HOH HOH . G 6 HOH B 18 518 114 HOH HOH . G 6 HOH B 19 519 31 HOH HOH . G 6 HOH B 20 520 21 HOH HOH . G 6 HOH B 21 521 39 HOH HOH . G 6 HOH B 22 522 55 HOH HOH . G 6 HOH B 23 523 68 HOH HOH . G 6 HOH B 24 524 60 HOH HOH . G 6 HOH B 25 525 65 HOH HOH . G 6 HOH B 26 526 1 HOH HOH . G 6 HOH B 27 527 127 HOH HOH . G 6 HOH B 28 528 43 HOH HOH . G 6 HOH B 29 529 85 HOH HOH . G 6 HOH B 30 530 45 HOH HOH . G 6 HOH B 31 531 67 HOH HOH . G 6 HOH B 32 532 10 HOH HOH . G 6 HOH B 33 533 97 HOH HOH . G 6 HOH B 34 534 71 HOH HOH . G 6 HOH B 35 535 72 HOH HOH . G 6 HOH B 36 536 107 HOH HOH . G 6 HOH B 37 537 101 HOH HOH . G 6 HOH B 38 538 79 HOH HOH . G 6 HOH B 39 539 3 HOH HOH . G 6 HOH B 40 540 20 HOH HOH . G 6 HOH B 41 541 70 HOH HOH . G 6 HOH B 42 542 30 HOH HOH . G 6 HOH B 43 543 113 HOH HOH . G 6 HOH B 44 544 75 HOH HOH . G 6 HOH B 45 545 104 HOH HOH . G 6 HOH B 46 546 92 HOH HOH . G 6 HOH B 47 547 125 HOH HOH . G 6 HOH B 48 548 80 HOH HOH . G 6 HOH B 49 549 4 HOH HOH . G 6 HOH B 50 550 36 HOH HOH . G 6 HOH B 51 551 77 HOH HOH . G 6 HOH B 52 552 9 HOH HOH . G 6 HOH B 53 553 90 HOH HOH . G 6 HOH B 54 554 16 HOH HOH . G 6 HOH B 55 555 83 HOH HOH . G 6 HOH B 56 556 2 HOH HOH . G 6 HOH B 57 557 18 HOH HOH . G 6 HOH B 58 558 5 HOH HOH . G 6 HOH B 59 559 6 HOH HOH . G 6 HOH B 60 560 155 HOH HOH . G 6 HOH B 61 561 13 HOH HOH . G 6 HOH B 62 562 48 HOH HOH . G 6 HOH B 63 563 33 HOH HOH . G 6 HOH B 64 564 11 HOH HOH . G 6 HOH B 65 565 124 HOH HOH . G 6 HOH B 66 566 12 HOH HOH . G 6 HOH B 67 567 87 HOH HOH . G 6 HOH B 68 568 84 HOH HOH . G 6 HOH B 69 569 102 HOH HOH . G 6 HOH B 70 570 73 HOH HOH . G 6 HOH B 71 571 50 HOH HOH . G 6 HOH B 72 572 93 HOH HOH . G 6 HOH B 73 573 26 HOH HOH . G 6 HOH B 74 574 96 HOH HOH . G 6 HOH B 75 575 57 HOH HOH . G 6 HOH B 76 576 17 HOH HOH . G 6 HOH B 77 577 82 HOH HOH . G 6 HOH B 78 578 69 HOH HOH . G 6 HOH B 79 579 105 HOH HOH . G 6 HOH B 80 580 111 HOH HOH . G 6 HOH B 81 581 123 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . C 3 -1.415 -37.817 5.919 1 107.78 ? P PO4 401 B 1 HETATM 2 O O1 PO4 . . . C 3 -2.081 -37.577 4.543 1 57.99 ? O1 PO4 401 B 1 HETATM 3 O O2 PO4 . . . C 3 -0.717 -36.485 6.295 1 64.3 ? O2 PO4 401 B 1 HETATM 4 O O3 PO4 . . . C 3 -0.337 -38.909 5.921 1 90.82 ? O3 PO4 401 B 1 HETATM 5 O O4 PO4 . . . C 3 -2.484 -38.318 6.907 1 92.35 ? O4 PO4 401 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #