data_6KXD
#
_model_server_result.job_id            oGbDH9l-amPkZxiMZ2uXdw 
_model_server_result.datetime_utc      '2024-11-23 05:52:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6kxd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":402}' 
#
_entry.id    6KXD 
#
_exptl.entry_id    6KXD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6KXD 
_cell.length_a            67.603 
_cell.length_b            67.603 
_cell.length_c            261.781 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6KXD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 89 n n 
C1 C2 EDO sing 90 n n 
C1 H11 EDO sing 91 n n 
C1 H12 EDO sing 92 n n 
O1 HO1 EDO sing 93 n n 
C2 O2 EDO sing 94 n n 
C2 H21 EDO sing 95 n n 
C2 H22 EDO sing 96 n n 
O2 HO2 EDO sing 97 n n 
#
_atom_sites.entry_id                     6KXD 
_atom_sites.fract_transf_matrix[1][1]    0.014792 
_atom_sites.fract_transf_matrix[1][2]    0.00854 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017081 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00382 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 PO4 B 1 401 1 PO4 PO4 . 
D 4 EDO B 1 402 1 EDO EDO . 
E 5 ACT B 1 403 1 ACT ACT . 
F 6 HOH A 1 501 34 HOH HOH . 
F 6 HOH A 2 502 63 HOH HOH . 
F 6 HOH A 3 503 133 HOH HOH . 
F 6 HOH A 4 504 148 HOH HOH . 
F 6 HOH A 5 505 151 HOH HOH . 
F 6 HOH A 6 506 110 HOH HOH . 
F 6 HOH A 7 507 126 HOH HOH . 
F 6 HOH A 8 508 137 HOH HOH . 
F 6 HOH A 9 509 46 HOH HOH . 
F 6 HOH A 10 510 129 HOH HOH . 
F 6 HOH A 11 511 116 HOH HOH . 
F 6 HOH A 12 512 115 HOH HOH . 
F 6 HOH A 13 513 132 HOH HOH . 
F 6 HOH A 14 514 14 HOH HOH . 
F 6 HOH A 15 515 40 HOH HOH . 
F 6 HOH A 16 516 147 HOH HOH . 
F 6 HOH A 17 517 54 HOH HOH . 
F 6 HOH A 18 518 47 HOH HOH . 
F 6 HOH A 19 519 66 HOH HOH . 
F 6 HOH A 20 520 15 HOH HOH . 
F 6 HOH A 21 521 52 HOH HOH . 
F 6 HOH A 22 522 108 HOH HOH . 
F 6 HOH A 23 523 128 HOH HOH . 
F 6 HOH A 24 524 130 HOH HOH . 
F 6 HOH A 25 525 145 HOH HOH . 
F 6 HOH A 26 526 22 HOH HOH . 
F 6 HOH A 27 527 135 HOH HOH . 
F 6 HOH A 28 528 112 HOH HOH . 
F 6 HOH A 29 529 150 HOH HOH . 
F 6 HOH A 30 530 44 HOH HOH . 
F 6 HOH A 31 531 140 HOH HOH . 
F 6 HOH A 32 532 109 HOH HOH . 
F 6 HOH A 33 533 35 HOH HOH . 
F 6 HOH A 34 534 28 HOH HOH . 
F 6 HOH A 35 535 59 HOH HOH . 
F 6 HOH A 36 536 37 HOH HOH . 
F 6 HOH A 37 537 8 HOH HOH . 
F 6 HOH A 38 538 25 HOH HOH . 
F 6 HOH A 39 539 42 HOH HOH . 
F 6 HOH A 40 540 143 HOH HOH . 
F 6 HOH A 41 541 19 HOH HOH . 
F 6 HOH A 42 542 64 HOH HOH . 
F 6 HOH A 43 543 117 HOH HOH . 
F 6 HOH A 44 544 144 HOH HOH . 
F 6 HOH A 45 545 56 HOH HOH . 
F 6 HOH A 46 546 23 HOH HOH . 
F 6 HOH A 47 547 86 HOH HOH . 
F 6 HOH A 48 548 141 HOH HOH . 
F 6 HOH A 49 549 58 HOH HOH . 
F 6 HOH A 50 550 61 HOH HOH . 
F 6 HOH A 51 551 106 HOH HOH . 
F 6 HOH A 52 552 120 HOH HOH . 
F 6 HOH A 53 553 49 HOH HOH . 
F 6 HOH A 54 554 118 HOH HOH . 
F 6 HOH A 55 555 62 HOH HOH . 
F 6 HOH A 56 556 149 HOH HOH . 
F 6 HOH A 57 557 7 HOH HOH . 
F 6 HOH A 58 558 38 HOH HOH . 
F 6 HOH A 59 559 146 HOH HOH . 
F 6 HOH A 60 560 152 HOH HOH . 
F 6 HOH A 61 561 134 HOH HOH . 
F 6 HOH A 62 562 74 HOH HOH . 
F 6 HOH A 63 563 24 HOH HOH . 
F 6 HOH A 64 564 41 HOH HOH . 
F 6 HOH A 65 565 131 HOH HOH . 
F 6 HOH A 66 566 122 HOH HOH . 
F 6 HOH A 67 567 103 HOH HOH . 
F 6 HOH A 68 568 29 HOH HOH . 
F 6 HOH A 69 569 139 HOH HOH . 
F 6 HOH A 70 570 136 HOH HOH . 
F 6 HOH A 71 571 119 HOH HOH . 
F 6 HOH A 72 572 76 HOH HOH . 
F 6 HOH A 73 573 142 HOH HOH . 
G 6 HOH B 1 501 99 HOH HOH . 
G 6 HOH B 2 502 81 HOH HOH . 
G 6 HOH B 3 503 138 HOH HOH . 
G 6 HOH B 4 504 88 HOH HOH . 
G 6 HOH B 5 505 98 HOH HOH . 
G 6 HOH B 6 506 91 HOH HOH . 
G 6 HOH B 7 507 89 HOH HOH . 
G 6 HOH B 8 508 32 HOH HOH . 
G 6 HOH B 9 509 53 HOH HOH . 
G 6 HOH B 10 510 51 HOH HOH . 
G 6 HOH B 11 511 78 HOH HOH . 
G 6 HOH B 12 512 153 HOH HOH . 
G 6 HOH B 13 513 94 HOH HOH . 
G 6 HOH B 14 514 121 HOH HOH . 
G 6 HOH B 15 515 27 HOH HOH . 
G 6 HOH B 16 516 100 HOH HOH . 
G 6 HOH B 17 517 154 HOH HOH . 
G 6 HOH B 18 518 114 HOH HOH . 
G 6 HOH B 19 519 31 HOH HOH . 
G 6 HOH B 20 520 21 HOH HOH . 
G 6 HOH B 21 521 39 HOH HOH . 
G 6 HOH B 22 522 55 HOH HOH . 
G 6 HOH B 23 523 68 HOH HOH . 
G 6 HOH B 24 524 60 HOH HOH . 
G 6 HOH B 25 525 65 HOH HOH . 
G 6 HOH B 26 526 1 HOH HOH . 
G 6 HOH B 27 527 127 HOH HOH . 
G 6 HOH B 28 528 43 HOH HOH . 
G 6 HOH B 29 529 85 HOH HOH . 
G 6 HOH B 30 530 45 HOH HOH . 
G 6 HOH B 31 531 67 HOH HOH . 
G 6 HOH B 32 532 10 HOH HOH . 
G 6 HOH B 33 533 97 HOH HOH . 
G 6 HOH B 34 534 71 HOH HOH . 
G 6 HOH B 35 535 72 HOH HOH . 
G 6 HOH B 36 536 107 HOH HOH . 
G 6 HOH B 37 537 101 HOH HOH . 
G 6 HOH B 38 538 79 HOH HOH . 
G 6 HOH B 39 539 3 HOH HOH . 
G 6 HOH B 40 540 20 HOH HOH . 
G 6 HOH B 41 541 70 HOH HOH . 
G 6 HOH B 42 542 30 HOH HOH . 
G 6 HOH B 43 543 113 HOH HOH . 
G 6 HOH B 44 544 75 HOH HOH . 
G 6 HOH B 45 545 104 HOH HOH . 
G 6 HOH B 46 546 92 HOH HOH . 
G 6 HOH B 47 547 125 HOH HOH . 
G 6 HOH B 48 548 80 HOH HOH . 
G 6 HOH B 49 549 4 HOH HOH . 
G 6 HOH B 50 550 36 HOH HOH . 
G 6 HOH B 51 551 77 HOH HOH . 
G 6 HOH B 52 552 9 HOH HOH . 
G 6 HOH B 53 553 90 HOH HOH . 
G 6 HOH B 54 554 16 HOH HOH . 
G 6 HOH B 55 555 83 HOH HOH . 
G 6 HOH B 56 556 2 HOH HOH . 
G 6 HOH B 57 557 18 HOH HOH . 
G 6 HOH B 58 558 5 HOH HOH . 
G 6 HOH B 59 559 6 HOH HOH . 
G 6 HOH B 60 560 155 HOH HOH . 
G 6 HOH B 61 561 13 HOH HOH . 
G 6 HOH B 62 562 48 HOH HOH . 
G 6 HOH B 63 563 33 HOH HOH . 
G 6 HOH B 64 564 11 HOH HOH . 
G 6 HOH B 65 565 124 HOH HOH . 
G 6 HOH B 66 566 12 HOH HOH . 
G 6 HOH B 67 567 87 HOH HOH . 
G 6 HOH B 68 568 84 HOH HOH . 
G 6 HOH B 69 569 102 HOH HOH . 
G 6 HOH B 70 570 73 HOH HOH . 
G 6 HOH B 71 571 50 HOH HOH . 
G 6 HOH B 72 572 93 HOH HOH . 
G 6 HOH B 73 573 26 HOH HOH . 
G 6 HOH B 74 574 96 HOH HOH . 
G 6 HOH B 75 575 57 HOH HOH . 
G 6 HOH B 76 576 17 HOH HOH . 
G 6 HOH B 77 577 82 HOH HOH . 
G 6 HOH B 78 578 69 HOH HOH . 
G 6 HOH B 79 579 105 HOH HOH . 
G 6 HOH B 80 580 111 HOH HOH . 
G 6 HOH B 81 581 123 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 4 18.622 -17.94 6.303 1 59.41 ? C1 EDO 402 B 1 
HETATM 2 O O1 EDO . . . D 4 17.7 -18.043 7.419 1 52.24 ? O1 EDO 402 B 1 
HETATM 3 C C2 EDO . . . D 4 18.893 -16.556 5.699 1 60.13 ? C2 EDO 402 B 1 
HETATM 4 O O2 EDO . . . D 4 18.786 -16.775 4.295 1 61.08 ? O2 EDO 402 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          20 
_model_server_stats.element_count           4 
#