data_6KXR # _model_server_result.job_id 4tYUazJ7lw7tvKiznfHCxw _model_server_result.datetime_utc '2024-12-22 01:35:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kxr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 6KXR # _exptl.entry_id 6KXR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 134.087 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description D-MALATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6KXR _cell.length_a 97.09 _cell.length_b 101.58 _cell.length_c 117.42 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KXR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,F,I 1 1 B,C,E,G,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H6 O5' _chem_comp.formula_weight 134.087 _chem_comp.id MLT _chem_comp.mon_nstd_flag . _chem_comp.name D-MALATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(2R)-2-HYDROXYBUTANEDIOIC ACID;2-HYDROXY-SUCCINIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 MLT doub 237 n n C1 O2 MLT sing 238 n n C1 C2 MLT sing 239 n n C2 O3 MLT sing 240 n n C2 C3 MLT sing 241 n n C2 H2 MLT sing 242 n n O3 HO3 MLT sing 243 n n C3 C4 MLT sing 244 n n C3 H31 MLT sing 245 n n C3 H32 MLT sing 246 n n C4 O4 MLT doub 247 n n C4 O5 MLT sing 248 n n O5 HO5 MLT sing 249 n n O2 H6 MLT sing 250 n n # _atom_sites.entry_id 6KXR _atom_sites.fract_transf_matrix[1][1] 0.0103 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009844 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008516 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MLT C 1 401 1 MLT MLT . F 3 HOH A 1 401 55 HOH HOH . F 3 HOH A 2 402 28 HOH HOH . F 3 HOH A 3 403 2 HOH HOH . F 3 HOH A 4 404 63 HOH HOH . F 3 HOH A 5 405 42 HOH HOH . F 3 HOH A 6 406 5 HOH HOH . F 3 HOH A 7 407 51 HOH HOH . F 3 HOH A 8 408 17 HOH HOH . F 3 HOH A 9 409 21 HOH HOH . F 3 HOH A 10 410 108 HOH HOH . F 3 HOH A 11 411 133 HOH HOH . F 3 HOH A 12 412 30 HOH HOH . F 3 HOH A 13 413 102 HOH HOH . F 3 HOH A 14 414 58 HOH HOH . F 3 HOH A 15 415 39 HOH HOH . F 3 HOH A 16 416 33 HOH HOH . F 3 HOH A 17 417 35 HOH HOH . F 3 HOH A 18 418 87 HOH HOH . F 3 HOH A 19 419 60 HOH HOH . F 3 HOH A 20 420 70 HOH HOH . F 3 HOH A 21 421 57 HOH HOH . F 3 HOH A 22 422 34 HOH HOH . F 3 HOH A 23 423 62 HOH HOH . F 3 HOH A 24 424 40 HOH HOH . F 3 HOH A 25 425 47 HOH HOH . F 3 HOH A 26 426 50 HOH HOH . F 3 HOH A 27 427 93 HOH HOH . F 3 HOH A 28 428 22 HOH HOH . F 3 HOH A 29 429 14 HOH HOH . F 3 HOH A 30 430 45 HOH HOH . F 3 HOH A 31 431 127 HOH HOH . F 3 HOH A 32 432 53 HOH HOH . F 3 HOH A 33 433 38 HOH HOH . F 3 HOH A 34 434 126 HOH HOH . F 3 HOH A 35 435 76 HOH HOH . F 3 HOH A 36 436 48 HOH HOH . F 3 HOH A 37 437 59 HOH HOH . F 3 HOH A 38 438 64 HOH HOH . F 3 HOH A 39 439 44 HOH HOH . F 3 HOH A 40 440 117 HOH HOH . F 3 HOH A 41 441 134 HOH HOH . F 3 HOH A 42 442 77 HOH HOH . F 3 HOH A 43 443 91 HOH HOH . F 3 HOH A 44 444 114 HOH HOH . F 3 HOH A 45 445 125 HOH HOH . F 3 HOH A 46 446 8 HOH HOH . F 3 HOH A 47 447 119 HOH HOH . F 3 HOH A 48 448 115 HOH HOH . F 3 HOH A 49 449 104 HOH HOH . F 3 HOH A 50 450 105 HOH HOH . F 3 HOH A 51 451 120 HOH HOH . F 3 HOH A 52 452 100 HOH HOH . G 3 HOH B 1 401 107 HOH HOH . G 3 HOH B 2 402 122 HOH HOH . G 3 HOH B 3 403 74 HOH HOH . G 3 HOH B 4 404 9 HOH HOH . G 3 HOH B 5 405 112 HOH HOH . G 3 HOH B 6 406 142 HOH HOH . G 3 HOH B 7 407 25 HOH HOH . G 3 HOH B 8 408 109 HOH HOH . G 3 HOH B 9 409 137 HOH HOH . G 3 HOH B 10 410 16 HOH HOH . G 3 HOH B 11 411 136 HOH HOH . G 3 HOH B 12 412 69 HOH HOH . G 3 HOH B 13 413 37 HOH HOH . G 3 HOH B 14 414 36 HOH HOH . G 3 HOH B 15 415 56 HOH HOH . G 3 HOH B 16 416 130 HOH HOH . G 3 HOH B 17 417 89 HOH HOH . G 3 HOH B 18 418 32 HOH HOH . G 3 HOH B 19 419 132 HOH HOH . G 3 HOH B 20 420 4 HOH HOH . G 3 HOH B 21 421 15 HOH HOH . G 3 HOH B 22 422 121 HOH HOH . G 3 HOH B 23 423 79 HOH HOH . G 3 HOH B 24 424 85 HOH HOH . G 3 HOH B 25 425 95 HOH HOH . G 3 HOH B 26 426 6 HOH HOH . G 3 HOH B 27 427 49 HOH HOH . G 3 HOH B 28 428 84 HOH HOH . G 3 HOH B 29 429 11 HOH HOH . G 3 HOH B 30 430 111 HOH HOH . G 3 HOH B 31 431 65 HOH HOH . G 3 HOH B 32 432 73 HOH HOH . G 3 HOH B 33 433 23 HOH HOH . G 3 HOH B 34 434 86 HOH HOH . G 3 HOH B 35 435 29 HOH HOH . G 3 HOH B 36 436 3 HOH HOH . G 3 HOH B 37 437 78 HOH HOH . G 3 HOH B 38 438 131 HOH HOH . G 3 HOH B 39 439 81 HOH HOH . H 3 HOH C 1 501 75 HOH HOH . H 3 HOH C 2 502 71 HOH HOH . H 3 HOH C 3 503 68 HOH HOH . H 3 HOH C 4 504 24 HOH HOH . H 3 HOH C 5 505 66 HOH HOH . H 3 HOH C 6 506 54 HOH HOH . H 3 HOH C 7 507 92 HOH HOH . H 3 HOH C 8 508 12 HOH HOH . H 3 HOH C 9 509 118 HOH HOH . H 3 HOH C 10 510 26 HOH HOH . H 3 HOH C 11 511 52 HOH HOH . H 3 HOH C 12 512 88 HOH HOH . H 3 HOH C 13 513 135 HOH HOH . H 3 HOH C 14 514 101 HOH HOH . H 3 HOH C 15 515 61 HOH HOH . H 3 HOH C 16 516 19 HOH HOH . H 3 HOH C 17 517 80 HOH HOH . H 3 HOH C 18 518 27 HOH HOH . H 3 HOH C 19 519 41 HOH HOH . H 3 HOH C 20 520 97 HOH HOH . H 3 HOH C 21 521 124 HOH HOH . I 3 HOH D 1 401 140 HOH HOH . I 3 HOH D 2 402 90 HOH HOH . I 3 HOH D 3 403 83 HOH HOH . I 3 HOH D 4 404 43 HOH HOH . I 3 HOH D 5 405 139 HOH HOH . I 3 HOH D 6 406 110 HOH HOH . I 3 HOH D 7 407 103 HOH HOH . I 3 HOH D 8 408 82 HOH HOH . I 3 HOH D 9 409 99 HOH HOH . I 3 HOH D 10 410 67 HOH HOH . I 3 HOH D 11 411 116 HOH HOH . I 3 HOH D 12 412 128 HOH HOH . I 3 HOH D 13 413 94 HOH HOH . I 3 HOH D 14 414 138 HOH HOH . I 3 HOH D 15 415 141 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLT . . . E 2 1.624 20.337 -43.403 1 47.14 ? C1 MLT 401 C 1 HETATM 2 O O1 MLT . . . E 2 1.669 19.088 -43.17 1 45.06 ? O1 MLT 401 C 1 HETATM 3 O O2 MLT . . . E 2 0.637 20.996 -42.945 1 45.86 ? O2 MLT 401 C 1 HETATM 4 C C2 MLT . . . E 2 2.717 21.014 -44.236 1 48.71 ? C2 MLT 401 C 1 HETATM 5 O O3 MLT . . . E 2 3.925 20.32 -44.212 1 51.86 ? O3 MLT 401 C 1 HETATM 6 C C3 MLT . . . E 2 3.037 22.381 -43.696 1 48.75 ? C3 MLT 401 C 1 HETATM 7 C C4 MLT . . . E 2 4.187 23.118 -44.366 1 52.07 ? C4 MLT 401 C 1 HETATM 8 O O4 MLT . . . E 2 3.943 24.197 -45.001 1 54.48 ? O4 MLT 401 C 1 HETATM 9 O O5 MLT . . . E 2 5.379 22.694 -44.259 1 51.32 ? O5 MLT 401 C 1 HETATM 10 H H2 MLT . . . E 2 2.412 21.096 -45.162 1 58.45 ? H2 MLT 401 C 1 HETATM 11 H HO3 MLT . . . E 2 4.464 20.64 -44.842 1 62.23 ? HO3 MLT 401 C 1 HETATM 12 H H31 MLT . . . E 2 2.234 22.934 -43.777 1 58.5 ? H31 MLT 401 C 1 HETATM 13 H H32 MLT . . . E 2 3.249 22.289 -42.745 1 58.5 ? H32 MLT 401 C 1 # _model_server_stats.io_time_ms 115 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 13 #