data_6KYH
#
_model_server_result.job_id            jJSbcry7CIxtP8sc84x_YA 
_model_server_result.datetime_utc      '2024-10-20 19:11:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6kyh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":201}' 
#
_entry.id    6KYH 
#
_exptl.entry_id    6KYH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              522.196 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          108.35 
_cell.angle_gamma         90 
_cell.entry_id            6KYH 
_cell.length_a            80.569 
_cell.length_b            154.464 
_cell.length_c            116.949 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6KYH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
? dimeric 2 author_defined_assembly 3 
? dimeric 2 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,H,O,P 1 1 
B,E,I,J 2 1 
C,F,K,L 3 1 
D,G,M,N 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 I N N 
? 3 K N N 
? 3 M N N 
? 3 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 I O2B GNP . F GNP 201 1_555 J MG MG . F MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? 
metalc ? metalc2 F OG1 THR 39 G THR 35 1_555 L MG MG . G MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.926 ? 
metalc ? metalc3 K O3G GNP . G GNP 201 1_555 L MG MG . G MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? 
metalc ? metalc4 G NZ LYS 20 H LYS 16 1_555 N MG MG . H MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.948 ? 
metalc ? metalc5 G OG1 THR 39 H THR 35 1_555 N MG MG . H MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.792 ? 
metalc ? metalc6 M O3G GNP . H GNP 201 1_555 N MG MG . H MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? 
metalc ? metalc7 H OG1 THR 39 E THR 35 1_555 P MG MG . E MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.857 ? 
metalc ? metalc8 O O3G GNP . E GNP 201 1_555 P MG MG . E MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
metalc ? metalc9 O O2B GNP . E GNP 201 1_555 P MG MG . E MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
#
_chem_comp.formula           'C10 H17 N6 O13 P3' 
_chem_comp.formula_weight    522.196 
_chem_comp.id                GNP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GNP doub 129 n n 
PG O2G GNP sing 130 n n 
PG O3G GNP sing 131 n n 
PG N3B GNP sing 132 n n 
O2G HOG2 GNP sing 133 n n 
O3G HOG3 GNP sing 134 n n 
N3B PB GNP sing 135 n n 
N3B HNB3 GNP sing 136 n n 
PB O1B GNP doub 137 n n 
PB O2B GNP sing 138 n n 
PB O3A GNP sing 139 n n 
O2B HOB2 GNP sing 140 n n 
O3A PA GNP sing 141 n n 
PA O1A GNP doub 142 n n 
PA O2A GNP sing 143 n n 
PA O5' GNP sing 144 n n 
O2A HOA2 GNP sing 145 n n 
O5' C5' GNP sing 146 n n 
C5' C4' GNP sing 147 n n 
C5' "H5'2" GNP sing 148 n n 
C5' "H5'1" GNP sing 149 n n 
C4' O4' GNP sing 150 n n 
C4' C3' GNP sing 151 n n 
C4' H4' GNP sing 152 n n 
O4' C1' GNP sing 153 n n 
C3' O3' GNP sing 154 n n 
C3' C2' GNP sing 155 n n 
C3' H3' GNP sing 156 n n 
O3' HO3' GNP sing 157 n n 
C2' O2' GNP sing 158 n n 
C2' C1' GNP sing 159 n n 
C2' H2' GNP sing 160 n n 
O2' HO2' GNP sing 161 n n 
C1' N9 GNP sing 162 n n 
C1' H1' GNP sing 163 n n 
N9 C8 GNP sing 164 n y 
N9 C4 GNP sing 165 n y 
C8 N7 GNP doub 166 n y 
C8 H8 GNP sing 167 n n 
N7 C5 GNP sing 168 n y 
C5 C6 GNP sing 169 n y 
C5 C4 GNP doub 170 n y 
C6 O6 GNP doub 171 n n 
C6 N1 GNP sing 172 n y 
N1 C2 GNP sing 173 n y 
N1 HN1 GNP sing 174 n n 
C2 N2 GNP sing 175 n n 
C2 N3 GNP doub 176 n y 
N2 HN21 GNP sing 177 n n 
N2 HN22 GNP sing 178 n n 
N3 C4 GNP sing 179 n y 
#
_atom_sites.entry_id                     6KYH 
_atom_sites.fract_transf_matrix[1][1]    0.012412 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004116 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006474 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009009 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 GNP F 1 201 201 GNP GNP . 
J 4 MG F 1 202 202 MG MG . 
K 3 GNP G 1 201 201 GNP GNP . 
L 4 MG G 1 202 202 MG MG . 
M 3 GNP H 1 201 201 GNP GNP . 
N 4 MG H 1 202 202 MG MG . 
O 3 GNP E 1 201 201 GNP GNP . 
P 4 MG E 1 202 202 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GNP . . . O 3 -54.373 15.934 49.779 1 76.78 ? PG GNP 201 E 1 
HETATM 2 O O1G GNP . . . O 3 -53.734 15.775 48.418 1 71.28 ? O1G GNP 201 E 1 
HETATM 3 O O2G GNP . . . O 3 -55.346 14.797 49.967 1 71.93 ? O2G GNP 201 E 1 
HETATM 4 O O3G GNP . . . O 3 -53.284 15.774 50.816 1 81.37 ? O3G GNP 201 E 1 
HETATM 5 N N3B GNP . . . O 3 -54.994 17.45 49.995 1 76.95 ? N3B GNP 201 E 1 
HETATM 6 P PB GNP . . . O 3 -54.131 18.671 50.713 1 79 ? PB GNP 201 E 1 
HETATM 7 O O1B GNP . . . O 3 -54.955 19.483 51.656 1 76.77 ? O1B GNP 201 E 1 
HETATM 8 O O2B GNP . . . O 3 -52.872 18.091 51.283 1 90.8 ? O2B GNP 201 E 1 
HETATM 9 O O3A GNP . . . O 3 -53.588 19.726 49.622 1 71.38 ? O3A GNP 201 E 1 
HETATM 10 P PA GNP . . . O 3 -52.083 20.283 49.539 1 65.05 ? PA GNP 201 E 1 
HETATM 11 O O1A GNP . . . O 3 -51.308 19.304 48.711 1 64.62 ? O1A GNP 201 E 1 
HETATM 12 O O2A GNP . . . O 3 -51.698 20.574 50.96 1 60.39 ? O2A GNP 201 E 1 
HETATM 13 O O5' GNP . . . O 3 -52.205 21.666 48.727 1 71.07 ? O5' GNP 201 E 1 
HETATM 14 C C5' GNP . . . O 3 -52.683 21.719 47.358 1 75.98 ? C5' GNP 201 E 1 
HETATM 15 C C4' GNP . . . O 3 -51.642 22.32 46.451 1 80.89 ? C4' GNP 201 E 1 
HETATM 16 O O4' GNP . . . O 3 -51.968 23.705 46.187 1 80.93 ? O4' GNP 201 E 1 
HETATM 17 C C3' GNP . . . O 3 -50.209 22.308 46.994 1 87.48 ? C3' GNP 201 E 1 
HETATM 18 O O3' GNP . . . O 3 -49.384 21.634 46.056 1 93.77 ? O3' GNP 201 E 1 
HETATM 19 C C2' GNP . . . O 3 -49.807 23.778 47.172 1 87.46 ? C2' GNP 201 E 1 
HETATM 20 O O2' GNP . . . O 3 -48.745 24.158 46.323 1 89.61 ? O2' GNP 201 E 1 
HETATM 21 C C1' GNP . . . O 3 -51.075 24.568 46.856 1 86.22 ? C1' GNP 201 E 1 
HETATM 22 N N9 GNP . . . O 3 -51.726 25.106 48.048 1 86.7 ? N9 GNP 201 E 1 
HETATM 23 C C8 GNP . . . O 3 -52.112 24.383 49.146 1 85.3 ? C8 GNP 201 E 1 
HETATM 24 N N7 GNP . . . O 3 -52.672 25.113 50.082 1 84.58 ? N7 GNP 201 E 1 
HETATM 25 C C5 GNP . . . O 3 -52.647 26.409 49.577 1 85.24 ? C5 GNP 201 E 1 
HETATM 26 C C6 GNP . . . O 3 -53.107 27.629 50.146 1 82.91 ? C6 GNP 201 E 1 
HETATM 27 O O6 GNP . . . O 3 -53.645 27.806 51.245 1 83.56 ? O6 GNP 201 E 1 
HETATM 28 N N1 GNP . . . O 3 -52.869 28.724 49.315 1 80.11 ? N1 GNP 201 E 1 
HETATM 29 C C2 GNP . . . O 3 -52.286 28.644 48.077 1 81.3 ? C2 GNP 201 E 1 
HETATM 30 N N2 GNP . . . O 3 -52.161 29.796 47.409 1 79.48 ? N2 GNP 201 E 1 
HETATM 31 N N3 GNP . . . O 3 -51.855 27.503 47.532 1 86.29 ? N3 GNP 201 E 1 
HETATM 32 C C4 GNP . . . O 3 -52.058 26.422 48.33 1 87.17 ? C4 GNP 201 E 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           261 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           32 
#