data_6KYK
#
_model_server_result.job_id            qBhVQOWkUqzKIuIXljyhng 
_model_server_result.datetime_utc      '2024-10-19 10:19:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6kyk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":202}' 
#
_entry.id    6KYK 
#
_exptl.entry_id    6KYK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.51 
_cell.angle_gamma         90 
_cell.entry_id            6KYK 
_cell.length_a            171.032 
_cell.length_b            54.107 
_cell.length_c            203.11 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6KYK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? trimeric 3 author_defined_assembly 1 
? trimeric 3 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G,H,I,J,O,Q,R 1 1 
B,E,F,K,L,M,N,P,S,T 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 H N N 
? 4 J N N 
? 4 L N N 
? 4 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 264 A CYS 258 1_555 A SG CYS 296 A CYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? 
disulf ? disulf2 B SG CYS 264 B CYS 258 1_555 B SG CYS 296 B CYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? 
metalc ? metalc1 C OG1 THR 38 C THR 35 1_555 H MG MG . C MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.732 ? 
metalc ? metalc2 G O3G GNP . C GNP 201 1_555 H MG MG . C MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? 
metalc ? metalc3 G O2B GNP . C GNP 201 1_555 H MG MG . C MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? 
metalc ? metalc4 H MG MG . C MG 202 1_555 Q O HOH . C HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? 
metalc ? metalc5 H MG MG . C MG 202 1_555 Q O HOH . C HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? 
metalc ? metalc6 I O3G GNP . D GNP 201 1_555 J MG MG . D MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? 
metalc ? metalc7 I O2B GNP . D GNP 201 1_555 J MG MG . D MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
metalc ? metalc8 J MG MG . D MG 202 1_555 R O HOH . D HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? 
metalc ? metalc9 J MG MG . D MG 202 1_555 R O HOH . D HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? 
metalc ? metalc10 E OG1 THR 38 E THR 35 1_555 L MG MG . E MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? 
metalc ? metalc11 K O3G GNP . E GNP 201 1_555 L MG MG . E MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
metalc ? metalc12 K O2B GNP . E GNP 201 1_555 L MG MG . E MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? 
metalc ? metalc13 L MG MG . E MG 202 1_555 S O HOH . E HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc14 L MG MG . E MG 202 1_555 S O HOH . E HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? 
metalc ? metalc15 F OG1 THR 38 F THR 35 1_555 N MG MG . F MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.77 ? 
metalc ? metalc16 M O3G GNP . F GNP 201 1_555 N MG MG . F MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc17 M O2B GNP . F GNP 201 1_555 N MG MG . F MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
metalc ? metalc18 N MG MG . F MG 202 1_555 T O HOH . F HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6KYK 
_atom_sites.fract_transf_matrix[1][1]    0.005847 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002072 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018482 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005223 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 GNP C 1 201 201 GNP GNP . 
H 4 MG C 1 202 202 MG MG . 
I 3 GNP D 1 201 201 GNP GNP . 
J 4 MG D 1 202 202 MG MG . 
K 3 GNP E 1 201 201 GNP GNP . 
L 4 MG E 1 202 202 MG MG . 
M 3 GNP F 1 201 201 GNP GNP . 
N 4 MG F 1 202 202 MG MG . 
O 5 HOH A 1 401 58 HOH HOH . 
O 5 HOH A 2 402 62 HOH HOH . 
O 5 HOH A 3 403 35 HOH HOH . 
O 5 HOH A 4 404 23 HOH HOH . 
O 5 HOH A 5 405 66 HOH HOH . 
O 5 HOH A 6 406 49 HOH HOH . 
O 5 HOH A 7 407 69 HOH HOH . 
O 5 HOH A 8 408 31 HOH HOH . 
O 5 HOH A 9 409 60 HOH HOH . 
O 5 HOH A 10 410 54 HOH HOH . 
O 5 HOH A 11 411 29 HOH HOH . 
O 5 HOH A 12 412 25 HOH HOH . 
O 5 HOH A 13 413 55 HOH HOH . 
O 5 HOH A 14 414 61 HOH HOH . 
O 5 HOH A 15 415 68 HOH HOH . 
O 5 HOH A 16 416 26 HOH HOH . 
O 5 HOH A 17 417 41 HOH HOH . 
P 5 HOH B 1 401 8 HOH HOH . 
P 5 HOH B 2 402 18 HOH HOH . 
P 5 HOH B 3 403 32 HOH HOH . 
P 5 HOH B 4 404 27 HOH HOH . 
P 5 HOH B 5 405 42 HOH HOH . 
P 5 HOH B 6 406 11 HOH HOH . 
P 5 HOH B 7 407 48 HOH HOH . 
P 5 HOH B 8 408 65 HOH HOH . 
P 5 HOH B 9 409 45 HOH HOH . 
P 5 HOH B 10 410 51 HOH HOH . 
P 5 HOH B 11 411 9 HOH HOH . 
P 5 HOH B 12 412 20 HOH HOH . 
P 5 HOH B 13 413 47 HOH HOH . 
P 5 HOH B 14 414 64 HOH HOH . 
P 5 HOH B 15 415 50 HOH HOH . 
P 5 HOH B 16 416 12 HOH HOH . 
P 5 HOH B 17 417 52 HOH HOH . 
P 5 HOH B 18 418 19 HOH HOH . 
Q 5 HOH C 1 301 72 HOH HOH . 
Q 5 HOH C 2 302 33 HOH HOH . 
Q 5 HOH C 3 303 73 HOH HOH . 
Q 5 HOH C 4 304 43 HOH HOH . 
Q 5 HOH C 5 305 56 HOH HOH . 
Q 5 HOH C 6 306 44 HOH HOH . 
Q 5 HOH C 7 307 36 HOH HOH . 
Q 5 HOH C 8 308 46 HOH HOH . 
R 5 HOH D 1 301 7 HOH HOH . 
R 5 HOH D 2 302 63 HOH HOH . 
R 5 HOH D 3 303 1 HOH HOH . 
R 5 HOH D 4 304 5 HOH HOH . 
R 5 HOH D 5 305 2 HOH HOH . 
R 5 HOH D 6 306 39 HOH HOH . 
R 5 HOH D 7 307 67 HOH HOH . 
R 5 HOH D 8 308 6 HOH HOH . 
S 5 HOH E 1 301 10 HOH HOH . 
S 5 HOH E 2 302 71 HOH HOH . 
S 5 HOH E 3 303 70 HOH HOH . 
S 5 HOH E 4 304 38 HOH HOH . 
S 5 HOH E 5 305 59 HOH HOH . 
S 5 HOH E 6 306 16 HOH HOH . 
S 5 HOH E 7 307 17 HOH HOH . 
S 5 HOH E 8 308 15 HOH HOH . 
S 5 HOH E 9 309 14 HOH HOH . 
S 5 HOH E 10 310 13 HOH HOH . 
T 5 HOH F 1 301 4 HOH HOH . 
T 5 HOH F 2 302 28 HOH HOH . 
T 5 HOH F 3 303 3 HOH HOH . 
T 5 HOH F 4 304 40 HOH HOH . 
T 5 HOH F 5 305 57 HOH HOH . 
T 5 HOH F 6 306 53 HOH HOH . 
T 5 HOH F 7 307 34 HOH HOH . 
T 5 HOH F 8 308 22 HOH HOH . 
T 5 HOH F 9 309 24 HOH HOH . 
T 5 HOH F 10 310 21 HOH HOH . 
T 5 HOH F 11 311 30 HOH HOH . 
T 5 HOH F 12 312 37 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         J 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               -10.884 
_atom_site.Cartn_y               -39.697 
_atom_site.Cartn_z               90.701 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        91.79 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           202 
_atom_site.auth_asym_id          D 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#