data_6KYL # _model_server_result.job_id G2CKRulvTbnuUiGiB1x6qQ _model_server_result.datetime_utc '2024-11-08 03:45:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kyl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 6KYL # _exptl.entry_id 6KYL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 368.36 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-3-(phosphonooxy)propane-1,2-diyl dihexanoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6KYL _cell.length_a 90.14 _cell.length_b 90.14 _cell.length_c 81.319 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KYL _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E 1 1 C,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 13 A CYS 13 1_555 A SG CYS 52 A CYS 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 23 A CYS 23 1_555 A SG CYS 42 A CYS 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 C SG CYS 13 C CYS 13 1_555 C SG CYS 52 C CYS 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 C SG CYS 23 C CYS 23 1_555 C SG CYS 42 C CYS 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? # _chem_comp.formula 'C15 H29 O8 P' _chem_comp.formula_weight 368.36 _chem_comp.id 44E _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-3-(phosphonooxy)propane-1,2-diyl dihexanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O22 C21 44E doub 1 n n O12 P 44E doub 2 n n C1 C2 44E sing 3 n n C1 O11 44E sing 4 n n C2 C3 44E sing 5 n n C2 O21 44E sing 6 n n C23 C22 44E sing 7 n n C21 O21 44E sing 8 n n C21 C22 44E sing 9 n n C3 O31 44E sing 10 n n O11 P 44E sing 11 n n P O14 44E sing 12 n n P O13 44E sing 13 n n C32 C33 44E sing 14 n n C32 C31 44E sing 15 n n O31 C31 44E sing 16 n n C33 C34 44E sing 17 n n C31 O32 44E doub 18 n n C34 C35 44E sing 19 n n C36 C35 44E sing 20 n n O13 H1 44E sing 21 n n O14 H2 44E sing 22 n n C1 H3 44E sing 23 n n C1 H4 44E sing 24 n n C2 H5 44E sing 25 n n C22 H6 44E sing 26 n n C22 H7 44E sing 27 n n C23 H8 44E sing 28 n n C23 H9 44E sing 29 n n C3 H11 44E sing 30 n n C3 H12 44E sing 31 n n C32 H13 44E sing 32 n n C32 H14 44E sing 33 n n C33 H15 44E sing 34 n n C33 H16 44E sing 35 n n C34 H17 44E sing 36 n n C34 H18 44E sing 37 n n C35 H19 44E sing 38 n n C35 H20 44E sing 39 n n C36 H21 44E sing 40 n n C36 H22 44E sing 41 n n C36 H23 44E sing 42 n n C23 C4 44E sing 43 n n C4 C5 44E sing 44 n n C5 C6 44E sing 45 n n C4 H10 44E sing 46 n n C4 H24 44E sing 47 n n C5 H25 44E sing 48 n n C5 H26 44E sing 49 n n C6 H27 44E sing 50 n n C6 H28 44E sing 51 n n C6 H29 44E sing 52 n n # _atom_sites.entry_id 6KYL _atom_sites.fract_transf_matrix[1][1] 0.011094 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011094 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012297 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 44E B 1 201 1 44E PX2 . F 3 44E D 1 201 2 44E PX2 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O13 44E . . . E 3 -14.301 24.757 -15.983 1 69.57 ? O13 44E 201 B 1 HETATM 2 P P 44E . . . E 3 -14.968 25.277 -14.732 1 61.45 ? P 44E 201 B 1 HETATM 3 O O14 44E . . . E 3 -16.129 24.38 -14.372 1 58.68 ? O14 44E 201 B 1 HETATM 4 O O12 44E . . . E 3 -15.468 26.682 -14.976 1 43.69 ? O12 44E 201 B 1 HETATM 5 O O11 44E . . . E 3 -13.88 25.292 -13.493 1 43.45 ? O11 44E 201 B 1 HETATM 6 C C1 44E . . . E 3 -12.515 25.344 -13.799 1 40.45 ? C1 44E 201 B 1 HETATM 7 C C2 44E . . . E 3 -11.768 26.055 -12.672 1 39.9 ? C2 44E 201 B 1 HETATM 8 O O21 44E . . . E 3 -11.489 25.142 -11.648 1 50.75 ? O21 44E 201 B 1 HETATM 9 C C21 44E . . . E 3 -10.156 25.143 -11.22 1 45.8 ? C21 44E 201 B 1 HETATM 10 O O22 44E . . . E 3 -9.317 24.628 -11.882 1 51.54 ? O22 44E 201 B 1 HETATM 11 C C22 44E . . . E 3 -9.786 25.811 -9.897 1 31.97 ? C22 44E 201 B 1 HETATM 12 C C23 44E . . . E 3 -8.669 25.027 -9.212 1 23.84 ? C23 44E 201 B 1 HETATM 13 C C3 44E . . . E 3 -12.638 27.187 -12.127 1 37.76 ? C3 44E 201 B 1 HETATM 14 O O31 44E . . . E 3 -11.965 27.849 -11.094 1 31.88 ? O31 44E 201 B 1 HETATM 15 C C31 44E . . . E 3 -12.806 28.384 -10.111 1 29.08 ? C31 44E 201 B 1 HETATM 16 O O32 44E . . . E 3 -13.903 28.736 -10.392 1 27.04 ? O32 44E 201 B 1 HETATM 17 C C32 44E . . . E 3 -12.312 28.509 -8.672 1 23.76 ? C32 44E 201 B 1 HETATM 18 C C33 44E . . . E 3 -11.781 29.921 -8.431 1 23.5 ? C33 44E 201 B 1 HETATM 19 C C34 44E . . . E 3 -10.279 29.849 -8.165 1 23.28 ? C34 44E 201 B 1 HETATM 20 C C35 44E . . . E 3 -9.972 30.423 -6.783 1 23 ? C35 44E 201 B 1 HETATM 21 C C4 44E . . . E 3 -8.164 25.814 -8.005 1 23.47 ? C4 44E 201 B 1 HETATM 22 C C5 44E . . . E 3 -6.637 25.837 -8.009 1 23.32 ? C5 44E 201 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 222 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 22 #