data_6KYP # _model_server_result.job_id mH9VEFXvRIY8_RxMJ-jF3A _model_server_result.datetime_utc '2024-10-31 00:25:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kyp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 6KYP # _exptl.entry_id 6KYP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 276.675 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-chloro-5-nitro-N-phenylbenzamide _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.15 _cell.angle_gamma 90 _cell.entry_id 6KYP _cell.length_a 60.71 _cell.length_b 102.478 _cell.length_c 61.465 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KYP _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E 1 1 B,F,G,H,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 80 A CYS 275 1_555 D C9 GW9 . A GW9 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.8 ? covale ? covale2 A SG CYS 81 A CYS 276 1_555 C C9 GW9 . A GW9 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.799 ? covale ? covale3 A SG CYS 83 A CYS 278 1_555 E C9 GW9 . A GW9 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.799 ? covale ? covale4 B SG CYS 80 B CYS 275 1_555 G C9 GW9 . B GW9 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.799 ? covale ? covale5 B SG CYS 81 B CYS 276 1_555 F C9 GW9 . B GW9 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.8 ? covale ? covale6 B SG CYS 83 B CYS 278 1_555 H C9 GW9 . B GW9 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.798 ? # _chem_comp.formula 'C13 H9 Cl N2 O3' _chem_comp.formula_weight 276.675 _chem_comp.id GW9 _chem_comp.mon_nstd_flag . _chem_comp.name 2-chloro-5-nitro-N-phenylbenzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL C9 GW9 sing 154 n n C9 C10 GW9 doub 155 n y C9 C8 GW9 sing 156 n y C10 C11 GW9 sing 157 n y C10 H10 GW9 sing 158 n n C11 C12 GW9 doub 159 n y C11 H11 GW9 sing 160 n n C12 N2 GW9 sing 161 n n C12 C13 GW9 sing 162 n y N2 O3 GW9 sing 163 n n N2 O2 GW9 doub 164 n n C13 C8 GW9 doub 165 n y C13 H13 GW9 sing 166 n n C8 C1 GW9 sing 167 n n C1 O1 GW9 doub 168 n n C1 N1 GW9 sing 169 n n N1 C2 GW9 sing 170 n n N1 HN1 GW9 sing 171 n n C2 C7 GW9 doub 172 n y C2 C3 GW9 sing 173 n y C7 C6 GW9 sing 174 n y C7 H7 GW9 sing 175 n n C6 C5 GW9 doub 176 n y C6 H6 GW9 sing 177 n n C5 C4 GW9 sing 178 n y C5 H5 GW9 sing 179 n n C4 C3 GW9 doub 180 n y C4 H4 GW9 sing 181 n n C3 H3 GW9 sing 182 n n # _atom_sites.entry_id 6KYP _atom_sites.fract_transf_matrix[1][1] 0.016472 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002949 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009758 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016528 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GW9 A 1 501 1 GW9 GW9 . D 2 GW9 A 1 502 3 GW9 GW9 . E 2 GW9 A 1 503 5 GW9 GW9 . F 2 GW9 B 1 501 2 GW9 GW9 . G 2 GW9 B 1 502 4 GW9 GW9 . H 2 GW9 B 1 503 6 GW9 GW9 . I 3 E0O B 1 504 2 E0O C0F . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C9 GW9 . . . C 2 80.606 7.881 41.686 1 47.91 ? C9 GW9 501 A 1 HETATM 2 C C10 GW9 . . . C 2 81.14 8.191 40.443 1 47.45 ? C10 GW9 501 A 1 HETATM 3 C C11 GW9 . . . C 2 80.659 7.571 39.3 1 45.54 ? C11 GW9 501 A 1 HETATM 4 C C12 GW9 . . . C 2 79.639 6.638 39.399 1 48.89 ? C12 GW9 501 A 1 HETATM 5 N N2 GW9 . . . C 2 79.122 5.978 38.214 1 55.15 ? N2 GW9 501 A 1 HETATM 6 O O3 GW9 . . . C 2 78.617 4.672 38.309 1 55.4 -1 O3 GW9 501 A 1 HETATM 7 O O2 GW9 . . . C 2 79.13 6.538 37.18 1 48.96 ? O2 GW9 501 A 1 HETATM 8 C C13 GW9 . . . C 2 79.107 6.324 40.637 1 50.46 ? C13 GW9 501 A 1 HETATM 9 C C8 GW9 . . . C 2 79.593 6.94 41.779 1 46.41 ? C8 GW9 501 A 1 HETATM 10 C C1 GW9 . . . C 2 78.971 6.574 43.126 1 46.34 ? C1 GW9 501 A 1 HETATM 11 O O1 GW9 . . . C 2 78.809 7.413 43.943 1 43.33 ? O1 GW9 501 A 1 HETATM 12 N N1 GW9 . . . C 2 78.577 5.191 43.357 1 51.07 ? N1 GW9 501 A 1 HETATM 13 C C2 GW9 . . . C 2 77.955 4.744 44.599 1 54.72 ? C2 GW9 501 A 1 HETATM 14 C C7 GW9 . . . C 2 77.298 3.524 44.603 1 57.28 ? C7 GW9 501 A 1 HETATM 15 C C6 GW9 . . . C 2 76.686 3.061 45.756 1 60.67 ? C6 GW9 501 A 1 HETATM 16 C C5 GW9 . . . C 2 76.729 3.822 46.913 1 61.37 ? C5 GW9 501 A 1 HETATM 17 C C4 GW9 . . . C 2 77.382 5.043 46.912 1 57.69 ? C4 GW9 501 A 1 HETATM 18 C C3 GW9 . . . C 2 77.993 5.505 45.758 1 51.23 ? C3 GW9 501 A 1 HETATM 19 H H10 GW9 . . . C 2 81.823 8.818 40.377 1 56.82 ? H10 GW9 501 A 1 HETATM 20 H H11 GW9 . . . C 2 81.018 7.782 38.469 1 54.52 ? H11 GW9 501 A 1 HETATM 21 H H13 GW9 . . . C 2 78.423 5.697 40.703 1 60.43 ? H13 GW9 501 A 1 HETATM 22 H HN1 GW9 . . . C 2 78.704 4.616 42.73 1 61.15 ? HN1 GW9 501 A 1 HETATM 23 H H7 GW9 . . . C 2 77.268 3.013 43.826 1 68.61 ? H7 GW9 501 A 1 HETATM 24 H H6 GW9 . . . C 2 76.249 2.241 45.754 1 72.68 ? H6 GW9 501 A 1 HETATM 25 H H5 GW9 . . . C 2 76.32 3.513 47.689 1 73.51 ? H5 GW9 501 A 1 HETATM 26 H H4 GW9 . . . C 2 77.411 5.554 47.689 1 69.1 ? H4 GW9 501 A 1 HETATM 27 H H3 GW9 . . . C 2 78.431 6.326 45.761 1 61.35 ? H3 GW9 501 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #