data_6KYP # _model_server_result.job_id Wvzvz1craTIuwdLfgAuU4A _model_server_result.datetime_utc '2024-11-23 12:55:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kyp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 6KYP # _exptl.entry_id 6KYP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 276.675 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-chloro-5-nitro-N-phenylbenzamide _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.15 _cell.angle_gamma 90 _cell.entry_id 6KYP _cell.length_a 60.71 _cell.length_b 102.478 _cell.length_c 61.465 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KYP _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E 1 1 B,F,G,H,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 80 A CYS 275 1_555 D C9 GW9 . A GW9 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.8 ? covale ? covale2 A SG CYS 81 A CYS 276 1_555 C C9 GW9 . A GW9 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.799 ? covale ? covale3 A SG CYS 83 A CYS 278 1_555 E C9 GW9 . A GW9 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.799 ? covale ? covale4 B SG CYS 80 B CYS 275 1_555 G C9 GW9 . B GW9 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.799 ? covale ? covale5 B SG CYS 81 B CYS 276 1_555 F C9 GW9 . B GW9 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.8 ? covale ? covale6 B SG CYS 83 B CYS 278 1_555 H C9 GW9 . B GW9 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.798 ? # _chem_comp.formula 'C13 H9 Cl N2 O3' _chem_comp.formula_weight 276.675 _chem_comp.id GW9 _chem_comp.mon_nstd_flag . _chem_comp.name 2-chloro-5-nitro-N-phenylbenzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL C9 GW9 sing 154 n n C9 C10 GW9 doub 155 n y C9 C8 GW9 sing 156 n y C10 C11 GW9 sing 157 n y C10 H10 GW9 sing 158 n n C11 C12 GW9 doub 159 n y C11 H11 GW9 sing 160 n n C12 N2 GW9 sing 161 n n C12 C13 GW9 sing 162 n y N2 O3 GW9 sing 163 n n N2 O2 GW9 doub 164 n n C13 C8 GW9 doub 165 n y C13 H13 GW9 sing 166 n n C8 C1 GW9 sing 167 n n C1 O1 GW9 doub 168 n n C1 N1 GW9 sing 169 n n N1 C2 GW9 sing 170 n n N1 HN1 GW9 sing 171 n n C2 C7 GW9 doub 172 n y C2 C3 GW9 sing 173 n y C7 C6 GW9 sing 174 n y C7 H7 GW9 sing 175 n n C6 C5 GW9 doub 176 n y C6 H6 GW9 sing 177 n n C5 C4 GW9 sing 178 n y C5 H5 GW9 sing 179 n n C4 C3 GW9 doub 180 n y C4 H4 GW9 sing 181 n n C3 H3 GW9 sing 182 n n # _atom_sites.entry_id 6KYP _atom_sites.fract_transf_matrix[1][1] 0.016472 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002949 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009758 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016528 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GW9 A 1 501 1 GW9 GW9 . D 2 GW9 A 1 502 3 GW9 GW9 . E 2 GW9 A 1 503 5 GW9 GW9 . F 2 GW9 B 1 501 2 GW9 GW9 . G 2 GW9 B 1 502 4 GW9 GW9 . H 2 GW9 B 1 503 6 GW9 GW9 . I 3 E0O B 1 504 2 E0O C0F . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C9 GW9 . . . D 2 80.988 2.427 45.541 1 61.84 ? C9 GW9 502 A 1 HETATM 2 C C10 GW9 . . . D 2 80.659 3.191 46.652 1 62 ? C10 GW9 502 A 1 HETATM 3 C C11 GW9 . . . D 2 79.716 2.734 47.557 1 64.3 ? C11 GW9 502 A 1 HETATM 4 C C12 GW9 . . . D 2 79.1 1.511 47.353 1 71.86 ? C12 GW9 502 A 1 HETATM 5 N N2 GW9 . . . D 2 78.109 1.039 48.301 1 74.1 ? N2 GW9 502 A 1 HETATM 6 O O3 GW9 . . . D 2 77.119 0.136 47.89 1 73.89 -1 O3 GW9 502 A 1 HETATM 7 O O2 GW9 . . . D 2 78.135 1.426 49.41 1 76.18 ? O2 GW9 502 A 1 HETATM 8 C C13 GW9 . . . D 2 79.424 0.747 46.244 1 67.32 ? C13 GW9 502 A 1 HETATM 9 C C8 GW9 . . . D 2 80.368 1.203 45.338 1 64.56 ? C8 GW9 502 A 1 HETATM 10 C C1 GW9 . . . D 2 80.706 0.336 44.124 1 71.62 ? C1 GW9 502 A 1 HETATM 11 O O1 GW9 . . . D 2 81.464 0.731 43.304 1 70.55 ? O1 GW9 502 A 1 HETATM 12 N N1 GW9 . . . D 2 80.075 -0.974 44.008 1 74.16 ? N1 GW9 502 A 1 HETATM 13 C C2 GW9 . . . D 2 80.338 -1.867 42.888 1 76.25 ? C2 GW9 502 A 1 HETATM 14 C C7 GW9 . . . D 2 80.345 -3.237 43.106 1 89.15 ? C7 GW9 502 A 1 HETATM 15 C C6 GW9 . . . D 2 80.589 -4.112 42.059 1 88.83 ? C6 GW9 502 A 1 HETATM 16 C C5 GW9 . . . D 2 80.82 -3.612 40.786 1 89.38 ? C5 GW9 502 A 1 HETATM 17 C C4 GW9 . . . D 2 80.809 -2.243 40.565 1 80.72 ? C4 GW9 502 A 1 HETATM 18 C C3 GW9 . . . D 2 80.564 -1.37 41.614 1 70.97 ? C3 GW9 502 A 1 HETATM 19 H H10 GW9 . . . D 2 81.075 4.012 46.79 1 74.27 ? H10 GW9 502 A 1 HETATM 20 H H11 GW9 . . . D 2 79.497 3.247 48.301 1 77.03 ? H11 GW9 502 A 1 HETATM 21 H H13 GW9 . . . D 2 79.007 -0.074 46.108 1 80.66 ? H13 GW9 502 A 1 HETATM 22 H HN1 GW9 . . . D 2 79.53 -1.228 44.622 1 88.86 ? HN1 GW9 502 A 1 HETATM 23 H H7 GW9 . . . D 2 80.191 -3.57 43.961 1 106.85 ? H7 GW9 502 A 1 HETATM 24 H H6 GW9 . . . D 2 80.597 -5.03 42.209 1 106.47 ? H6 GW9 502 A 1 HETATM 25 H H5 GW9 . . . D 2 80.984 -4.195 40.081 1 107.13 ? H5 GW9 502 A 1 HETATM 26 H H4 GW9 . . . D 2 80.964 -1.91 39.711 1 96.74 ? H4 GW9 502 A 1 HETATM 27 H H3 GW9 . . . D 2 80.558 -0.453 41.464 1 85.04 ? H3 GW9 502 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #