data_6KYY # _model_server_result.job_id SU2AgjhEb_iY7kjOTzgOIw _model_server_result.datetime_utc '2025-02-05 08:59:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kyy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":502}' # _entry.id 6KYY # _exptl.entry_id 6KYY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 63.546 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COPPER (II) ION' _entity.pdbx_number_of_molecules 32 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.62 _cell.angle_gamma 90 _cell.entry_id 6KYY _cell.length_a 72.694 _cell.length_b 188.955 _cell.length_c 95.056 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KYY _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W 1 1 C,D,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 S N N ? 3 T N N ? 3 U N N ? 3 V N N ? 3 X N N ? 3 Z N N ? 3 AA N N ? 3 BA N N ? 3 CA N N ? 3 DA N N ? 3 EA N N ? 3 FA N N ? 3 HA N N ? 3 JA N N ? 3 KA N N ? 3 LA N N ? 3 MA N N ? 3 NA N N ? 3 OA N N ? 3 PA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 50 A CYS 43 1_555 M CU CU . A CU 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc2 A SG CYS 55 A CYS 48 1_555 M CU CU . A CU 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc3 A NE2 HIS 68 A HIS 61 1_555 F CU CU . A CU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc4 A NE2 HIS 117 A HIS 110 1_555 J CU CU . A CU 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc5 A ND1 HIS 167 A HIS 160 1_555 I CU CU . A CU 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc6 A NE2 HIS 242 A HIS 235 1_555 H CU CU . A CU 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc7 A NE2 HIS 267 A HIS 260 1_555 L CU CU . A CU 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc8 A OG1 THR 307 A THR 300 1_555 M CU CU . A CU 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc9 B SG CYS 55 B CYS 48 1_555 V CU CU . B CU 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc10 B NE2 HIS 68 B HIS 61 1_555 Q CU CU . B CU 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc11 B ND2 ASN 87 B ASN 80 1_555 R CU CU . B CU 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc12 B NE2 HIS 91 B HIS 84 1_555 R CU CU . B CU 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? metalc ? metalc13 B NE2 HIS 228 B HIS 221 1_555 S CU CU . B CU 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc14 B ND1 HIS 242 B HIS 235 1_555 U CU CU . B CU 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc15 B NE2 HIS 245 B HIS 238 1_555 T CU CU . B CU 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc16 B NE2 HIS 267 B HIS 260 1_555 P CU CU . B CU 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc17 C NE2 HIS 68 C HIS 61 1_555 DA CU CU . C CU 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc18 C NE2 HIS 91 C HIS 84 1_555 EA CU CU . C CU 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? metalc ? metalc19 C NE2 HIS 228 C HIS 221 1_555 BA CU CU . C CU 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc20 C NE2 HIS 234 C HIS 227 1_555 AA CU CU . C CU 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc21 C NE2 HIS 267 C HIS 260 1_555 CA CU CU . C CU 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc22 D SG CYS 50 D CYS 43 1_555 PA CU CU . D CU 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc23 D SG CYS 55 D CYS 48 1_555 PA CU CU . D CU 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc24 D NE2 HIS 68 D HIS 61 1_555 MA CU CU . D CU 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? metalc ? metalc25 D NE2 HIS 91 D HIS 84 1_555 OA CU CU . D CU 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc26 D NE2 HIS 117 D HIS 110 1_555 KA CU CU . D CU 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc27 D NE2 HIS 234 D HIS 227 1_555 LA CU CU . D CU 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc28 D NE2 HIS 267 D HIS 260 1_555 JA CU CU . D CU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? # _chem_comp.formula 'Cu 2' _chem_comp.formula_weight 63.546 _chem_comp.id CU _chem_comp.mon_nstd_flag . _chem_comp.name 'COPPER (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6KYY _atom_sites.fract_transf_matrix[1][1] 0.013756 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004369 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005292 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011038 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FAD A 1 501 442 FAD FAD . F 3 CU A 1 502 443 CU CU . G 3 CU A 1 503 444 CU CU . H 3 CU A 1 504 445 CU CU . I 3 CU A 1 505 446 CU CU . J 3 CU A 1 506 447 CU CU . K 3 CU A 1 507 448 CU CU . L 3 CU A 1 508 449 CU CU . M 3 CU A 1 509 450 CU CU . N 2 FAD B 1 501 442 FAD FAD . O 3 CU B 1 502 443 CU CU . P 3 CU B 1 503 444 CU CU . Q 3 CU B 1 504 445 CU CU . R 3 CU B 1 505 446 CU CU . S 3 CU B 1 506 447 CU CU . T 3 CU B 1 507 448 CU CU . U 3 CU B 1 508 449 CU CU . V 3 CU B 1 509 450 CU CU . W 4 CL B 1 510 451 CL CL . X 3 CU C 1 501 442 CU CU . Y 2 FAD C 1 502 443 FAD FAD . Z 3 CU C 1 503 444 CU CU . AA 3 CU C 1 504 445 CU CU . BA 3 CU C 1 505 446 CU CU . CA 3 CU C 1 506 447 CU CU . DA 3 CU C 1 507 448 CU CU . EA 3 CU C 1 508 449 CU CU . FA 3 CU C 1 509 450 CU CU . GA 4 CL C 1 510 451 CL CL . HA 3 CU C 1 511 452 CU CU . IA 2 FAD D 1 501 442 FAD FAD . JA 3 CU D 1 502 443 CU CU . KA 3 CU D 1 503 444 CU CU . LA 3 CU D 1 504 445 CU CU . MA 3 CU D 1 505 446 CU CU . NA 3 CU D 1 506 447 CU CU . OA 3 CU D 1 507 448 CU CU . PA 3 CU D 1 508 449 CU CU . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CU _atom_site.label_atom_id CU _atom_site.label_comp_id CU _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id O _atom_site.label_entity_id 3 _atom_site.Cartn_x -12.726 _atom_site.Cartn_y -30.126 _atom_site.Cartn_z 58.945 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 72.49 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CU _atom_site.auth_comp_id CU _atom_site.auth_seq_id 502 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #