data_6KZK # _model_server_result.job_id B1xquyY6R1tgC04x0i-hyA _model_server_result.datetime_utc '2025-08-31 15:38:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kzk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":304}' # _entry.id 6KZK # _exptl.entry_id 6KZK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6KZK _cell.length_a 105.77 _cell.length_b 188.316 _cell.length_c 91.106 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KZK _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G,J 1 1 B,E,H,K 2 1 C,F,I,L 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 I N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 BEM BEM C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BEM BEM C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n D BEM 1 D 1 BEM D 303 BEM 2 n D BEM 2 D 2 BEM D 302 BEM 2 n D BEM 3 D 3 BEM D 301 BEM 2 n E BEM 1 E 1 BEM D 311 BEM 2 n E BEM 2 E 2 BEM D 310 BEM 2 n E BEM 3 E 3 BEM D 309 BEM 2 n F BEM 1 F 1 BEM D 307 BEM 2 n F BEM 2 F 2 BEM D 306 BEM 2 n F BEM 3 F 3 BEM D 305 BEM # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 D O4 BEM . D BEM 1 1_555 D C1 BEM . D BEM 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.4 ? covale ? covale2 D O4 BEM . D BEM 2 1_555 D C1 BEM . D BEM 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? covale ? covale3 E O4 BEM . E BEM 1 1_555 E C1 BEM . E BEM 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.499 ? covale ? covale4 E O4 BEM . E BEM 2 1_555 E C1 BEM . E BEM 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale5 F O4 BEM . F BEM 1 1_555 F C1 BEM . F BEM 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.471 ? covale ? covale6 F O4 BEM . F BEM 2 1_555 F C1 BEM . F BEM 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.414 ? metalc ? metalc1 A O ASN 9 A ASN 27 1_555 G CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc2 A O GLY 43 A GLY 61 1_555 G CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? metalc ? metalc3 A OD1 ASP 233 A ASP 251 1_555 G CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc4 A OD2 ASP 233 A ASP 251 1_555 G CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.694 ? metalc ? metalc5 G CA CA . A CA 304 1_555 J O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc6 G CA CA . A CA 304 1_555 J O HOH . A HOH 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.788 ? metalc ? metalc7 B O ASN 9 B ASN 27 1_555 H CA CA . B CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc8 B OD1 ASN 11 B ASN 29 1_555 H CA CA . B CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc9 B O GLY 43 B GLY 61 1_555 H CA CA . B CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc10 B OD1 ASP 233 B ASP 251 1_555 H CA CA . B CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.779 ? metalc ? metalc11 B OD2 ASP 233 B ASP 251 1_555 H CA CA . B CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? metalc ? metalc12 H CA CA . B CA 304 1_555 K O HOH . B HOH 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.788 ? metalc ? metalc13 H CA CA . B CA 304 1_555 K O HOH . B HOH 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.684 ? metalc ? metalc14 C O ASN 9 C ASN 27 1_555 I CA CA . C CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc15 C O GLY 43 C GLY 61 1_555 I CA CA . C CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc16 C OD1 ASP 233 C ASP 251 1_555 I CA CA . C CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? metalc ? metalc17 C OD2 ASP 233 C ASP 251 1_555 I CA CA . C CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.121 ? metalc ? metalc18 I CA CA . C CA 304 1_555 L O HOH . C HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.175 ? metalc ? metalc19 I CA CA . C CA 304 1_555 L O HOH . C HOH 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6KZK _atom_sites.fract_transf_matrix[1][1] 0.009454 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00531 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010976 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 CA A 1 304 1 CA CA . H 3 CA B 1 304 2 CA CA . I 3 CA C 1 304 3 CA CA . J 4 HOH A 1 401 191 HOH HOH . J 4 HOH A 2 402 154 HOH HOH . J 4 HOH A 3 403 143 HOH HOH . J 4 HOH A 4 404 34 HOH HOH . J 4 HOH A 5 405 132 HOH HOH . J 4 HOH A 6 406 122 HOH HOH . J 4 HOH A 7 407 64 HOH HOH . J 4 HOH A 8 408 1 HOH HOH . J 4 HOH A 9 409 134 HOH HOH . J 4 HOH A 10 410 4 HOH HOH . J 4 HOH A 11 411 99 HOH HOH . J 4 HOH A 12 412 57 HOH HOH . J 4 HOH A 13 413 23 HOH HOH . J 4 HOH A 14 414 22 HOH HOH . J 4 HOH A 15 415 95 HOH HOH . J 4 HOH A 16 416 66 HOH HOH . J 4 HOH A 17 417 94 HOH HOH . J 4 HOH A 18 418 121 HOH HOH . J 4 HOH A 19 419 120 HOH HOH . J 4 HOH A 20 420 175 HOH HOH . J 4 HOH A 21 421 78 HOH HOH . J 4 HOH A 22 422 89 HOH HOH . J 4 HOH A 23 423 180 HOH HOH . J 4 HOH A 24 424 86 HOH HOH . J 4 HOH A 25 425 17 HOH HOH . J 4 HOH A 26 426 166 HOH HOH . J 4 HOH A 27 427 167 HOH HOH . J 4 HOH A 28 428 45 HOH HOH . J 4 HOH A 29 429 131 HOH HOH . J 4 HOH A 30 430 97 HOH HOH . J 4 HOH A 31 431 82 HOH HOH . J 4 HOH A 32 432 24 HOH HOH . J 4 HOH A 33 433 168 HOH HOH . J 4 HOH A 34 434 84 HOH HOH . J 4 HOH A 35 435 85 HOH HOH . J 4 HOH A 36 436 147 HOH HOH . J 4 HOH A 37 437 11 HOH HOH . J 4 HOH A 38 438 192 HOH HOH . J 4 HOH A 39 439 104 HOH HOH . J 4 HOH A 40 440 170 HOH HOH . J 4 HOH A 41 441 142 HOH HOH . J 4 HOH A 42 442 20 HOH HOH . J 4 HOH A 43 443 90 HOH HOH . J 4 HOH A 44 444 68 HOH HOH . J 4 HOH A 45 445 46 HOH HOH . J 4 HOH A 46 446 157 HOH HOH . J 4 HOH A 47 447 133 HOH HOH . J 4 HOH A 48 448 93 HOH HOH . J 4 HOH A 49 449 188 HOH HOH . J 4 HOH A 50 450 62 HOH HOH . J 4 HOH A 51 451 145 HOH HOH . J 4 HOH A 52 452 144 HOH HOH . J 4 HOH A 53 453 110 HOH HOH . J 4 HOH A 54 454 135 HOH HOH . J 4 HOH A 55 455 150 HOH HOH . J 4 HOH A 56 456 159 HOH HOH . J 4 HOH A 57 457 140 HOH HOH . J 4 HOH A 58 458 105 HOH HOH . J 4 HOH A 59 459 148 HOH HOH . J 4 HOH A 60 460 141 HOH HOH . J 4 HOH A 61 461 137 HOH HOH . J 4 HOH A 62 462 162 HOH HOH . K 4 HOH B 1 401 173 HOH HOH . K 4 HOH B 2 402 111 HOH HOH . K 4 HOH B 3 403 2 HOH HOH . K 4 HOH B 4 404 5 HOH HOH . K 4 HOH B 5 405 73 HOH HOH . K 4 HOH B 6 406 49 HOH HOH . K 4 HOH B 7 407 72 HOH HOH . K 4 HOH B 8 408 13 HOH HOH . K 4 HOH B 9 409 109 HOH HOH . K 4 HOH B 10 410 41 HOH HOH . K 4 HOH B 11 411 16 HOH HOH . K 4 HOH B 12 412 43 HOH HOH . K 4 HOH B 13 413 153 HOH HOH . K 4 HOH B 14 414 96 HOH HOH . K 4 HOH B 15 415 48 HOH HOH . K 4 HOH B 16 416 31 HOH HOH . K 4 HOH B 17 417 50 HOH HOH . K 4 HOH B 18 418 10 HOH HOH . K 4 HOH B 19 419 183 HOH HOH . K 4 HOH B 20 420 8 HOH HOH . K 4 HOH B 21 421 126 HOH HOH . K 4 HOH B 22 422 55 HOH HOH . K 4 HOH B 23 423 29 HOH HOH . K 4 HOH B 24 424 106 HOH HOH . K 4 HOH B 25 425 7 HOH HOH . K 4 HOH B 26 426 115 HOH HOH . K 4 HOH B 27 427 186 HOH HOH . K 4 HOH B 28 428 102 HOH HOH . K 4 HOH B 29 429 112 HOH HOH . K 4 HOH B 30 430 87 HOH HOH . K 4 HOH B 31 431 60 HOH HOH . K 4 HOH B 32 432 12 HOH HOH . K 4 HOH B 33 433 36 HOH HOH . K 4 HOH B 34 434 52 HOH HOH . K 4 HOH B 35 435 26 HOH HOH . K 4 HOH B 36 436 92 HOH HOH . K 4 HOH B 37 437 179 HOH HOH . K 4 HOH B 38 438 81 HOH HOH . K 4 HOH B 39 439 18 HOH HOH . K 4 HOH B 40 440 80 HOH HOH . K 4 HOH B 41 441 182 HOH HOH . K 4 HOH B 42 442 69 HOH HOH . K 4 HOH B 43 443 151 HOH HOH . K 4 HOH B 44 444 119 HOH HOH . K 4 HOH B 45 445 172 HOH HOH . K 4 HOH B 46 446 27 HOH HOH . K 4 HOH B 47 447 185 HOH HOH . K 4 HOH B 48 448 160 HOH HOH . K 4 HOH B 49 449 138 HOH HOH . K 4 HOH B 50 450 158 HOH HOH . K 4 HOH B 51 451 174 HOH HOH . K 4 HOH B 52 452 193 HOH HOH . K 4 HOH B 53 453 107 HOH HOH . K 4 HOH B 54 454 42 HOH HOH . K 4 HOH B 55 455 169 HOH HOH . K 4 HOH B 56 456 163 HOH HOH . K 4 HOH B 57 457 91 HOH HOH . K 4 HOH B 58 458 123 HOH HOH . K 4 HOH B 59 459 164 HOH HOH . K 4 HOH B 60 460 100 HOH HOH . K 4 HOH B 61 461 165 HOH HOH . K 4 HOH B 62 462 130 HOH HOH . L 4 HOH C 1 401 194 HOH HOH . L 4 HOH C 2 402 65 HOH HOH . L 4 HOH C 3 403 178 HOH HOH . L 4 HOH C 4 404 70 HOH HOH . L 4 HOH C 5 405 149 HOH HOH . L 4 HOH C 6 406 58 HOH HOH . L 4 HOH C 7 407 79 HOH HOH . L 4 HOH C 8 408 128 HOH HOH . L 4 HOH C 9 409 61 HOH HOH . L 4 HOH C 10 410 15 HOH HOH . L 4 HOH C 11 411 67 HOH HOH . L 4 HOH C 12 412 35 HOH HOH . L 4 HOH C 13 413 113 HOH HOH . L 4 HOH C 14 414 39 HOH HOH . L 4 HOH C 15 415 71 HOH HOH . L 4 HOH C 16 416 51 HOH HOH . L 4 HOH C 17 417 19 HOH HOH . L 4 HOH C 18 418 30 HOH HOH . L 4 HOH C 19 419 44 HOH HOH . L 4 HOH C 20 420 189 HOH HOH . L 4 HOH C 21 421 161 HOH HOH . L 4 HOH C 22 422 98 HOH HOH . L 4 HOH C 23 423 38 HOH HOH . L 4 HOH C 24 424 54 HOH HOH . L 4 HOH C 25 425 37 HOH HOH . L 4 HOH C 26 426 139 HOH HOH . L 4 HOH C 27 427 125 HOH HOH . L 4 HOH C 28 428 76 HOH HOH . L 4 HOH C 29 429 152 HOH HOH . L 4 HOH C 30 430 103 HOH HOH . L 4 HOH C 31 431 171 HOH HOH . L 4 HOH C 32 432 40 HOH HOH . L 4 HOH C 33 433 108 HOH HOH . L 4 HOH C 34 434 6 HOH HOH . L 4 HOH C 35 435 129 HOH HOH . L 4 HOH C 36 436 3 HOH HOH . L 4 HOH C 37 437 156 HOH HOH . L 4 HOH C 38 438 25 HOH HOH . L 4 HOH C 39 439 77 HOH HOH . L 4 HOH C 40 440 32 HOH HOH . L 4 HOH C 41 441 14 HOH HOH . L 4 HOH C 42 442 33 HOH HOH . L 4 HOH C 43 443 9 HOH HOH . L 4 HOH C 44 444 59 HOH HOH . L 4 HOH C 45 445 74 HOH HOH . L 4 HOH C 46 446 56 HOH HOH . L 4 HOH C 47 447 28 HOH HOH . L 4 HOH C 48 448 47 HOH HOH . L 4 HOH C 49 449 21 HOH HOH . L 4 HOH C 50 450 155 HOH HOH . L 4 HOH C 51 451 63 HOH HOH . L 4 HOH C 52 452 116 HOH HOH . L 4 HOH C 53 453 187 HOH HOH . L 4 HOH C 54 454 53 HOH HOH . L 4 HOH C 55 455 124 HOH HOH . L 4 HOH C 56 456 75 HOH HOH . L 4 HOH C 57 457 83 HOH HOH . L 4 HOH C 58 458 117 HOH HOH . L 4 HOH C 59 459 88 HOH HOH . L 4 HOH C 60 460 190 HOH HOH . L 4 HOH C 61 461 146 HOH HOH . L 4 HOH C 62 462 101 HOH HOH . L 4 HOH C 63 463 177 HOH HOH . L 4 HOH C 64 464 118 HOH HOH . L 4 HOH C 65 465 176 HOH HOH . L 4 HOH C 66 466 136 HOH HOH . L 4 HOH C 67 467 184 HOH HOH . L 4 HOH C 68 468 127 HOH HOH . L 4 HOH C 69 469 114 HOH HOH . L 4 HOH C 70 470 181 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 3 _atom_site.Cartn_x -34.103 _atom_site.Cartn_y -14.799 _atom_site.Cartn_z 7.484 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 35.07 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 304 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 421 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #