data_6KZO # _model_server_result.job_id 69mVKum4qi21MdA34fGUuA _model_server_result.datetime_utc '2024-11-21 14:22:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kzo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":2306}' # _entry.id 6KZO # _exptl.entry_id 6KZO _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6KZO _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KZO _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 104 A CYS 104 1_555 A SG CYS 889 A CYS 889 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? disulf ? disulf2 A SG CYS 271 A CYS 271 1_555 A SG CYS 282 A CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.911 ? disulf ? disulf3 A SG CYS 1418 A CYS 1418 1_555 A SG CYS 1432 A CYS 1432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf4 A SG CYS 1747 A CYS 1747 1_555 A SG CYS 1753 A CYS 1753 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? covale ? covale1 A ND2 ASN 246 A ASN 246 1_555 D C1 NAG . A NAG 2303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale2 A ND2 ASN 322 A ASN 322 1_555 E C1 NAG . A NAG 2304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale3 A ND2 ASN 1425 A ASN 1425 1_555 F C1 NAG . A NAG 2305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.478 ? covale ? covale4 A ND2 ASN 1428 A ASN 1428 1_555 G C1 NAG . A NAG 2306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.517 ? covale ? covale5 A ND2 ASN 1675 A ASN 1675 1_555 H C1 NAG . A NAG 2307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.471 ? metalc ? metalc1 A OE1 GLU 354 A GLU 354 1_555 B CA CA . A CA 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.157 ? metalc ? metalc2 A OE2 GLU 354 A GLU 354 1_555 B CA CA . A CA 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 367 n n C1 O1 NAG sing 368 n n C1 O5 NAG sing 369 n n C1 H1 NAG sing 370 n n C2 C3 NAG sing 371 n n C2 N2 NAG sing 372 n n C2 H2 NAG sing 373 n n C3 C4 NAG sing 374 n n C3 O3 NAG sing 375 n n C3 H3 NAG sing 376 n n C4 C5 NAG sing 377 n n C4 O4 NAG sing 378 n n C4 H4 NAG sing 379 n n C5 C6 NAG sing 380 n n C5 O5 NAG sing 381 n n C5 H5 NAG sing 382 n n C6 O6 NAG sing 383 n n C6 H61 NAG sing 384 n n C6 H62 NAG sing 385 n n C7 C8 NAG sing 386 n n C7 N2 NAG sing 387 n n C7 O7 NAG doub 388 n n C8 H81 NAG sing 389 n n C8 H82 NAG sing 390 n n C8 H83 NAG sing 391 n n N2 HN2 NAG sing 392 n n O1 HO1 NAG sing 393 n n O3 HO3 NAG sing 394 n n O4 HO4 NAG sing 395 n n O6 HO6 NAG sing 396 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6KZO _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 2301 2001 CA CA . C 2 CA A 1 2302 2002 CA CA . D 3 NAG A 1 2303 1 NAG NAG . E 3 NAG A 1 2304 2 NAG NAG . F 3 NAG A 1 2305 3 NAG NAG . G 3 NAG A 1 2306 4 NAG NAG . H 3 NAG A 1 2307 5 NAG NAG . I 4 3PE A 1 2308 1 3PE 3PE . J 4 3PE A 1 2309 2 3PE 3PE . K 4 3PE A 1 2310 3 3PE 3PE . L 4 3PE A 1 2311 4 3PE 3PE . M 4 3PE A 1 2312 5 3PE 3PE . N 4 3PE A 1 2313 6 3PE 3PE . O 4 3PE A 1 2314 7 3PE 3PE . P 4 3PE A 1 2315 8 3PE 3PE . Q 4 3PE A 1 2316 9 3PE 3PE . R 4 3PE A 1 2317 10 3PE 3PE . S 4 3PE A 1 2318 11 3PE 3PE . T 4 3PE A 1 2319 12 3PE 3PE . U 4 3PE A 1 2320 13 3PE 3PE . V 5 Y01 A 1 2321 3 Y01 LIG . W 5 Y01 A 1 2322 4 Y01 LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . G 3 192.658 187.96 221.031 1 61.22 ? C1 NAG 2306 A 1 HETATM 2 C C2 NAG . . . G 3 192.526 189.472 220.967 1 61.22 ? C2 NAG 2306 A 1 HETATM 3 C C3 NAG . . . G 3 191.867 190.1 222.202 1 61.22 ? C3 NAG 2306 A 1 HETATM 4 C C4 NAG . . . G 3 191.651 189.198 223.423 1 61.22 ? C4 NAG 2306 A 1 HETATM 5 C C5 NAG . . . G 3 192.058 187.736 223.256 1 61.22 ? C5 NAG 2306 A 1 HETATM 6 C C6 NAG . . . G 3 190.885 186.896 222.767 1 61.22 ? C6 NAG 2306 A 1 HETATM 7 C C7 NAG . . . G 3 194.877 189.881 221.536 1 61.22 ? C7 NAG 2306 A 1 HETATM 8 C C8 NAG . . . G 3 194.589 189.795 223.004 1 61.22 ? C8 NAG 2306 A 1 HETATM 9 N N2 NAG . . . G 3 193.828 190.075 220.738 1 61.22 ? N2 NAG 2306 A 1 HETATM 10 O O3 NAG . . . G 3 190.597 190.646 221.823 1 61.22 ? O3 NAG 2306 A 1 HETATM 11 O O4 NAG . . . G 3 192.359 189.761 224.533 1 61.22 ? O4 NAG 2306 A 1 HETATM 12 O O5 NAG . . . G 3 193.124 187.626 222.327 1 61.22 ? O5 NAG 2306 A 1 HETATM 13 O O6 NAG . . . G 3 190.137 186.419 223.889 1 61.22 ? O6 NAG 2306 A 1 HETATM 14 O O7 NAG . . . G 3 196.012 189.786 221.099 1 61.22 ? O7 NAG 2306 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #