data_6KZO
#
_model_server_result.job_id            kx9EnpICqIgubV37eCCmfA 
_model_server_result.datetime_utc      '2024-11-14 16:37:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6kzo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":2310}' 
#
_entry.id    6KZO 
#
_exptl.entry_id    6KZO 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              748.065 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-Distearoyl-sn-glycerophosphoethanolamine 
_entity.pdbx_number_of_molecules    13 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6KZO 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6KZO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 I N N 
? 4 J N N 
? 4 K N N 
? 4 L N N 
? 4 M N N 
? 4 N N N 
? 4 O N N 
? 4 P N N 
? 4 Q N N 
? 4 R N N 
? 4 S N N 
? 4 T N N 
? 4 U N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 104 A CYS 104 1_555 A SG CYS 889 A CYS 889 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? 
disulf ? disulf2 A SG CYS 271 A CYS 271 1_555 A SG CYS 282 A CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.911 ? 
disulf ? disulf3 A SG CYS 1418 A CYS 1418 1_555 A SG CYS 1432 A CYS 1432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf4 A SG CYS 1747 A CYS 1747 1_555 A SG CYS 1753 A CYS 1753 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
covale ? covale1 A ND2 ASN 246 A ASN 246 1_555 D C1 NAG . A NAG 2303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? 
covale ? covale2 A ND2 ASN 322 A ASN 322 1_555 E C1 NAG . A NAG 2304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? 
covale ? covale3 A ND2 ASN 1425 A ASN 1425 1_555 F C1 NAG . A NAG 2305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.478 ? 
covale ? covale4 A ND2 ASN 1428 A ASN 1428 1_555 G C1 NAG . A NAG 2306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.517 ? 
covale ? covale5 A ND2 ASN 1675 A ASN 1675 1_555 H C1 NAG . A NAG 2307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.471 ? 
metalc ? metalc1 A OE1 GLU 354 A GLU 354 1_555 B CA CA . A CA 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.157 ? 
metalc ? metalc2 A OE2 GLU 354 A GLU 354 1_555 B CA CA . A CA 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? 
#
_chem_comp.formula           'C41 H82 N O8 P' 
_chem_comp.formula_weight    748.065 
_chem_comp.id                3PE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-Distearoyl-sn-glycerophosphoethanolamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     3-SN-PHOSPHATIDYLETHANOLAMINE;1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O11 3PE sing 1 n n 
P O12 3PE sing 2 n n 
P O13 3PE sing 3 n n 
P O14 3PE doub 4 n n 
N C12 3PE sing 5 n n 
N HN1 3PE sing 6 n n 
N HN2 3PE sing 7 n n 
O11 C1 3PE sing 8 n n 
O13 C11 3PE sing 9 n n 
C11 C12 3PE sing 10 n n 
C11 H111 3PE sing 11 n n 
C11 H112 3PE sing 12 n n 
C12 H121 3PE sing 13 n n 
C12 H122 3PE sing 14 n n 
C1 C2 3PE sing 15 n n 
C1 H11 3PE sing 16 n n 
C1 H12 3PE sing 17 n n 
C2 C3 3PE sing 18 n n 
C2 O21 3PE sing 19 n n 
C2 H2 3PE sing 20 n n 
C3 O31 3PE sing 21 n n 
C3 H31 3PE sing 22 n n 
C3 H32 3PE sing 23 n n 
O31 C31 3PE sing 24 n n 
O32 C31 3PE doub 25 n n 
C31 C32 3PE sing 26 n n 
C32 C33 3PE sing 27 n n 
C32 H321 3PE sing 28 n n 
C32 H322 3PE sing 29 n n 
C33 C34 3PE sing 30 n n 
C33 H331 3PE sing 31 n n 
C33 H332 3PE sing 32 n n 
C34 C35 3PE sing 33 n n 
C34 H341 3PE sing 34 n n 
C34 H342 3PE sing 35 n n 
C35 C36 3PE sing 36 n n 
C35 H351 3PE sing 37 n n 
C35 H352 3PE sing 38 n n 
C36 C37 3PE sing 39 n n 
C36 H361 3PE sing 40 n n 
C36 H362 3PE sing 41 n n 
C37 C38 3PE sing 42 n n 
C37 H371 3PE sing 43 n n 
C37 H372 3PE sing 44 n n 
C38 C39 3PE sing 45 n n 
C38 H381 3PE sing 46 n n 
C38 H382 3PE sing 47 n n 
C39 C3A 3PE sing 48 n n 
C39 H391 3PE sing 49 n n 
C39 H392 3PE sing 50 n n 
C3A C3B 3PE sing 51 n n 
C3A H3A1 3PE sing 52 n n 
C3A H3A2 3PE sing 53 n n 
C3B C3C 3PE sing 54 n n 
C3B H3B1 3PE sing 55 n n 
C3B H3B2 3PE sing 56 n n 
C3C C3D 3PE sing 57 n n 
C3C H3C1 3PE sing 58 n n 
C3C H3C2 3PE sing 59 n n 
C3D C3E 3PE sing 60 n n 
C3D H3D1 3PE sing 61 n n 
C3D H3D2 3PE sing 62 n n 
C3E C3F 3PE sing 63 n n 
C3E H3E1 3PE sing 64 n n 
C3E H3E2 3PE sing 65 n n 
C3F C3G 3PE sing 66 n n 
C3F H3F1 3PE sing 67 n n 
C3F H3F2 3PE sing 68 n n 
C3G C3H 3PE sing 69 n n 
C3G H3G1 3PE sing 70 n n 
C3G H3G2 3PE sing 71 n n 
C3H C3I 3PE sing 72 n n 
C3H H3H1 3PE sing 73 n n 
C3H H3H2 3PE sing 74 n n 
C3I H3I1 3PE sing 75 n n 
C3I H3I2 3PE sing 76 n n 
C3I H3I3 3PE sing 77 n n 
O21 C21 3PE sing 78 n n 
O22 C21 3PE doub 79 n n 
C21 C22 3PE sing 80 n n 
C22 C23 3PE sing 81 n n 
C22 H221 3PE sing 82 n n 
C22 H222 3PE sing 83 n n 
C23 C24 3PE sing 84 n n 
C23 H231 3PE sing 85 n n 
C23 H232 3PE sing 86 n n 
C24 C25 3PE sing 87 n n 
C24 H241 3PE sing 88 n n 
C24 H242 3PE sing 89 n n 
C25 C26 3PE sing 90 n n 
C25 H251 3PE sing 91 n n 
C25 H252 3PE sing 92 n n 
C26 C27 3PE sing 93 n n 
C26 H261 3PE sing 94 n n 
C26 H262 3PE sing 95 n n 
C27 C28 3PE sing 96 n n 
C27 H271 3PE sing 97 n n 
C27 H272 3PE sing 98 n n 
C28 C29 3PE sing 99 n n 
C28 H281 3PE sing 100 n n 
C28 H282 3PE sing 101 n n 
C29 C2A 3PE sing 102 n n 
C29 H291 3PE sing 103 n n 
C29 H292 3PE sing 104 n n 
C2A C2B 3PE sing 105 n n 
C2A H2A1 3PE sing 106 n n 
C2A H2A2 3PE sing 107 n n 
C2B C2C 3PE sing 108 n n 
C2B H2B1 3PE sing 109 n n 
C2B H2B2 3PE sing 110 n n 
C2C C2D 3PE sing 111 n n 
C2C H2C1 3PE sing 112 n n 
C2C H2C2 3PE sing 113 n n 
C2D C2E 3PE sing 114 n n 
C2D H2D1 3PE sing 115 n n 
C2D H2D2 3PE sing 116 n n 
C2E C2F 3PE sing 117 n n 
C2E H2E1 3PE sing 118 n n 
C2E H2E2 3PE sing 119 n n 
C2F C2G 3PE sing 120 n n 
C2F H2F1 3PE sing 121 n n 
C2F H2F2 3PE sing 122 n n 
C2G C2H 3PE sing 123 n n 
C2G H2G1 3PE sing 124 n n 
C2G H2G2 3PE sing 125 n n 
C2H C2I 3PE sing 126 n n 
C2H H2H1 3PE sing 127 n n 
C2H H2H2 3PE sing 128 n n 
C2I H2I1 3PE sing 129 n n 
C2I H2I2 3PE sing 130 n n 
C2I H2I3 3PE sing 131 n n 
O12 H1 3PE sing 132 n n 
#
_atom_sites.entry_id                     6KZO 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 2301 2001 CA CA . 
C 2 CA A 1 2302 2002 CA CA . 
D 3 NAG A 1 2303 1 NAG NAG . 
E 3 NAG A 1 2304 2 NAG NAG . 
F 3 NAG A 1 2305 3 NAG NAG . 
G 3 NAG A 1 2306 4 NAG NAG . 
H 3 NAG A 1 2307 5 NAG NAG . 
I 4 3PE A 1 2308 1 3PE 3PE . 
J 4 3PE A 1 2309 2 3PE 3PE . 
K 4 3PE A 1 2310 3 3PE 3PE . 
L 4 3PE A 1 2311 4 3PE 3PE . 
M 4 3PE A 1 2312 5 3PE 3PE . 
N 4 3PE A 1 2313 6 3PE 3PE . 
O 4 3PE A 1 2314 7 3PE 3PE . 
P 4 3PE A 1 2315 8 3PE 3PE . 
Q 4 3PE A 1 2316 9 3PE 3PE . 
R 4 3PE A 1 2317 10 3PE 3PE . 
S 4 3PE A 1 2318 11 3PE 3PE . 
T 4 3PE A 1 2319 12 3PE 3PE . 
U 4 3PE A 1 2320 13 3PE 3PE . 
V 5 Y01 A 1 2321 3 Y01 LIG . 
W 5 Y01 A 1 2322 4 Y01 LIG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P 3PE . . . K 4 183.094 195.292 206.647 1 20 ? P 3PE 2310 A 1 
HETATM 2 N N 3PE . . . K 4 183.527 193.935 210.85 1 20 ? N 3PE 2310 A 1 
HETATM 3 O O11 3PE . . . K 4 182.188 195.687 205.373 1 20 ? O11 3PE 2310 A 1 
HETATM 4 O O12 3PE . . . K 4 184.413 194.756 206.146 1 20 ? O12 3PE 2310 A 1 
HETATM 5 O O13 3PE . . . K 4 182.28 194.078 207.319 1 20 ? O13 3PE 2310 A 1 
HETATM 6 O O14 3PE . . . K 4 183.084 196.453 207.61 1 20 ? O14 3PE 2310 A 1 
HETATM 7 C C11 3PE . . . K 4 182.216 193.946 208.74 1 20 ? C11 3PE 2310 A 1 
HETATM 8 C C12 3PE . . . K 4 183.605 194.066 209.368 1 20 ? C12 3PE 2310 A 1 
HETATM 9 C C1 3PE . . . K 4 180.989 194.981 205.047 1 20 ? C1 3PE 2310 A 1 
HETATM 10 C C2 3PE . . . K 4 180.028 195.927 204.324 1 20 ? C2 3PE 2310 A 1 
HETATM 11 C C3 3PE . . . K 4 179.422 196.965 205.278 1 20 ? C3 3PE 2310 A 1 
HETATM 12 O O31 3PE . . . K 4 178.836 198.036 204.542 1 20 ? O31 3PE 2310 A 1 
HETATM 13 O O32 3PE . . . K 4 176.542 198.165 204.314 1 20 ? O32 3PE 2310 A 1 
HETATM 14 C C31 3PE . . . K 4 177.602 197.872 203.788 1 20 ? C31 3PE 2310 A 1 
HETATM 15 C C32 3PE . . . K 4 177.636 197.36 202.367 1 20 ? C32 3PE 2310 A 1 
HETATM 16 C C33 3PE . . . K 4 176.455 197.914 201.573 1 20 ? C33 3PE 2310 A 1 
HETATM 17 C C34 3PE . . . K 4 176.544 197.474 200.116 1 20 ? C34 3PE 2310 A 1 
HETATM 18 C C35 3PE . . . K 4 175.337 197.923 199.3 1 20 ? C35 3PE 2310 A 1 
HETATM 19 C C36 3PE . . . K 4 175.501 197.533 197.833 1 20 ? C36 3PE 2310 A 1 
HETATM 20 C C37 3PE . . . K 4 174.237 197.829 197.035 1 20 ? C37 3PE 2310 A 1 
HETATM 21 C C38 3PE . . . K 4 174.383 197.363 195.59 1 20 ? C38 3PE 2310 A 1 
HETATM 22 O O21 3PE . . . K 4 180.742 196.577 203.269 1 20 ? O21 3PE 2310 A 1 
HETATM 23 O O22 3PE . . . K 4 182.57 195.754 202.138 1 20 ? O22 3PE 2310 A 1 
HETATM 24 C C21 3PE . . . K 4 181.37 195.631 202.346 1 20 ? C21 3PE 2310 A 1 
HETATM 25 C C22 3PE . . . K 4 180.562 194.534 201.66 1 20 ? C22 3PE 2310 A 1 
HETATM 26 C C23 3PE . . . K 4 180.495 194.756 200.144 1 20 ? C23 3PE 2310 A 1 
HETATM 27 C C24 3PE . . . K 4 179.494 193.811 199.471 1 20 ? C24 3PE 2310 A 1 
HETATM 28 C C25 3PE . . . K 4 179.301 194.033 197.959 1 20 ? C25 3PE 2310 A 1 
HETATM 29 C C26 3PE . . . K 4 180.224 193.192 197.063 1 20 ? C26 3PE 2310 A 1 
HETATM 30 C C27 3PE . . . K 4 180.368 193.686 195.613 1 20 ? C27 3PE 2310 A 1 
HETATM 31 C C28 3PE . . . K 4 179.506 193.002 194.551 1 20 ? C28 3PE 2310 A 1 
HETATM 32 C C29 3PE . . . K 4 179.876 193.5 193.153 1 20 ? C29 3PE 2310 A 1 
HETATM 33 C C2A 3PE . . . K 4 178.953 192.949 192.077 1 20 ? C2A 3PE 2310 A 1 
HETATM 34 C C2B 3PE . . . K 4 179.41 193.403 190.696 1 20 ? C2B 3PE 2310 A 1 
HETATM 35 C C2C 3PE . . . K 4 178.442 192.938 189.616 1 20 ? C2C 3PE 2310 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           35 
#