data_6KZO # _model_server_result.job_id 8VVQUTpdz21INU_pxDtiSA _model_server_result.datetime_utc '2024-11-21 14:28:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kzo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":2321}' # _entry.id 6KZO # _exptl.entry_id 6KZO _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6KZO _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KZO _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 V N N ? 5 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 104 A CYS 104 1_555 A SG CYS 889 A CYS 889 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? disulf ? disulf2 A SG CYS 271 A CYS 271 1_555 A SG CYS 282 A CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.911 ? disulf ? disulf3 A SG CYS 1418 A CYS 1418 1_555 A SG CYS 1432 A CYS 1432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf4 A SG CYS 1747 A CYS 1747 1_555 A SG CYS 1753 A CYS 1753 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? covale ? covale1 A ND2 ASN 246 A ASN 246 1_555 D C1 NAG . A NAG 2303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale2 A ND2 ASN 322 A ASN 322 1_555 E C1 NAG . A NAG 2304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale3 A ND2 ASN 1425 A ASN 1425 1_555 F C1 NAG . A NAG 2305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.478 ? covale ? covale4 A ND2 ASN 1428 A ASN 1428 1_555 G C1 NAG . A NAG 2306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.517 ? covale ? covale5 A ND2 ASN 1675 A ASN 1675 1_555 H C1 NAG . A NAG 2307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.471 ? metalc ? metalc1 A OE1 GLU 354 A GLU 354 1_555 B CA CA . A CA 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.157 ? metalc ? metalc2 A OE2 GLU 354 A GLU 354 1_555 B CA CA . A CA 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 536 n n CBA CAB Y01 sing 537 n n CBA CAN Y01 sing 538 n n CAN CAJ Y01 sing 539 n n CAJ CAO Y01 sing 540 n n CAO CBB Y01 sing 541 n n CBB CAC Y01 sing 542 n n CBB CBE Y01 sing 543 n n CBE CAP Y01 sing 544 n n CBE CBI Y01 sing 545 n n CAP CAQ Y01 sing 546 n n CAQ CBG Y01 sing 547 n n CBG CBI Y01 sing 548 n n CBG CBD Y01 sing 549 n n CBI CAE Y01 sing 550 n n CBI CAU Y01 sing 551 n n CAU CAS Y01 sing 552 n n CAS CBF Y01 sing 553 n n CBF CBD Y01 sing 554 n n CBF CBH Y01 sing 555 n n CBD CAK Y01 sing 556 n n CAK CAI Y01 sing 557 n n CAI CAZ Y01 doub 558 n n CAZ CAV Y01 sing 559 n n CAZ CBH Y01 sing 560 n n CAV CBC Y01 sing 561 n n CBH CAD Y01 sing 562 n n CBH CAT Y01 sing 563 n n CAT CAR Y01 sing 564 n n CAR CBC Y01 sing 565 n n CBC OAW Y01 sing 566 n n OAW CAY Y01 sing 567 n n CAY OAG Y01 doub 568 n n CAY CAM Y01 sing 569 n n CAM CAL Y01 sing 570 n n CAL CAX Y01 sing 571 n n CAX OAH Y01 sing 572 n n CAX OAF Y01 doub 573 n n CAA HAA1 Y01 sing 574 n n CAA HAA2 Y01 sing 575 n n CAA HAA3 Y01 sing 576 n n CBA HBA Y01 sing 577 n n CAB HAB1 Y01 sing 578 n n CAB HAB2 Y01 sing 579 n n CAB HAB3 Y01 sing 580 n n CAN HAN1 Y01 sing 581 n n CAN HAN2 Y01 sing 582 n n CAJ HAJ1 Y01 sing 583 n n CAJ HAJ2 Y01 sing 584 n n CAO HAO1 Y01 sing 585 n n CAO HAO2 Y01 sing 586 n n CBB HBB Y01 sing 587 n n CAC HAC1 Y01 sing 588 n n CAC HAC2 Y01 sing 589 n n CAC HAC3 Y01 sing 590 n n CBE HBE Y01 sing 591 n n CAP HAP1 Y01 sing 592 n n CAP HAP2 Y01 sing 593 n n CAQ HAQ1 Y01 sing 594 n n CAQ HAQ2 Y01 sing 595 n n CBG HBG Y01 sing 596 n n CBD HBD Y01 sing 597 n n CAE HAE1 Y01 sing 598 n n CAE HAE2 Y01 sing 599 n n CAE HAE3 Y01 sing 600 n n CAU HAU1 Y01 sing 601 n n CAU HAU2 Y01 sing 602 n n CAS HAS1 Y01 sing 603 n n CAS HAS2 Y01 sing 604 n n CBF HBF Y01 sing 605 n n CAK HAK1 Y01 sing 606 n n CAK HAK2 Y01 sing 607 n n CAI HAI Y01 sing 608 n n CAV HAV1 Y01 sing 609 n n CAV HAV2 Y01 sing 610 n n CBC HBC Y01 sing 611 n n CAD HAD1 Y01 sing 612 n n CAD HAD2 Y01 sing 613 n n CAD HAD3 Y01 sing 614 n n CAT HAT1 Y01 sing 615 n n CAT HAT2 Y01 sing 616 n n CAR HAR1 Y01 sing 617 n n CAR HAR2 Y01 sing 618 n n CAM HAM1 Y01 sing 619 n n CAM HAM2 Y01 sing 620 n n CAL HAL1 Y01 sing 621 n n CAL HAL2 Y01 sing 622 n n OAH HAH Y01 sing 623 n n # _atom_sites.entry_id 6KZO _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 2301 2001 CA CA . C 2 CA A 1 2302 2002 CA CA . D 3 NAG A 1 2303 1 NAG NAG . E 3 NAG A 1 2304 2 NAG NAG . F 3 NAG A 1 2305 3 NAG NAG . G 3 NAG A 1 2306 4 NAG NAG . H 3 NAG A 1 2307 5 NAG NAG . I 4 3PE A 1 2308 1 3PE 3PE . J 4 3PE A 1 2309 2 3PE 3PE . K 4 3PE A 1 2310 3 3PE 3PE . L 4 3PE A 1 2311 4 3PE 3PE . M 4 3PE A 1 2312 5 3PE 3PE . N 4 3PE A 1 2313 6 3PE 3PE . O 4 3PE A 1 2314 7 3PE 3PE . P 4 3PE A 1 2315 8 3PE 3PE . Q 4 3PE A 1 2316 9 3PE 3PE . R 4 3PE A 1 2317 10 3PE 3PE . S 4 3PE A 1 2318 11 3PE 3PE . T 4 3PE A 1 2319 12 3PE 3PE . U 4 3PE A 1 2320 13 3PE 3PE . V 5 Y01 A 1 2321 3 Y01 LIG . W 5 Y01 A 1 2322 4 Y01 LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . V 5 191.046 178.902 181.894 1 20 ? CAA Y01 2321 A 1 HETATM 2 C CBA Y01 . . . V 5 189.823 179.786 182.189 1 20 ? CBA Y01 2321 A 1 HETATM 3 C CAB Y01 . . . V 5 190.294 181.201 182.53 1 20 ? CAB Y01 2321 A 1 HETATM 4 C CAN Y01 . . . V 5 189.045 179.201 183.391 1 20 ? CAN Y01 2321 A 1 HETATM 5 C CAJ Y01 . . . V 5 190.035 178.48 184.361 1 20 ? CAJ Y01 2321 A 1 HETATM 6 C CAO Y01 . . . V 5 191.149 179.484 184.783 1 20 ? CAO Y01 2321 A 1 HETATM 7 C CBB Y01 . . . V 5 191.886 178.962 186.094 1 20 ? CBB Y01 2321 A 1 HETATM 8 C CAC Y01 . . . V 5 190.972 177.958 186.837 1 20 ? CAC Y01 2321 A 1 HETATM 9 C CBE Y01 . . . V 5 193.105 178.323 185.721 1 20 ? CBE Y01 2321 A 1 HETATM 10 C CAP Y01 . . . V 5 193.869 179.2 184.687 1 20 ? CAP Y01 2321 A 1 HETATM 11 C CAQ Y01 . . . V 5 195.537 178.87 184.981 1 20 ? CAQ Y01 2321 A 1 HETATM 12 C CBG Y01 . . . V 5 195.564 178.092 186.43 1 20 ? CBG Y01 2321 A 1 HETATM 13 C CBI Y01 . . . V 5 194.119 178.215 187.013 1 20 ? CBI Y01 2321 A 1 HETATM 14 C CAE Y01 . . . V 5 194.084 179.587 187.672 1 20 ? CAE Y01 2321 A 1 HETATM 15 C CAU Y01 . . . V 5 193.913 177.301 188.07 1 20 ? CAU Y01 2321 A 1 HETATM 16 C CAS Y01 . . . V 5 195.001 177.585 189.282 1 20 ? CAS Y01 2321 A 1 HETATM 17 C CBF Y01 . . . V 5 196.433 177.57 188.762 1 20 ? CBF Y01 2321 A 1 HETATM 18 C CBD Y01 . . . V 5 196.612 178.405 187.497 1 20 ? CBD Y01 2321 A 1 HETATM 19 C CAK Y01 . . . V 5 198.102 178.216 186.865 1 20 ? CAK Y01 2321 A 1 HETATM 20 C CAI Y01 . . . V 5 199.199 178.496 187.882 1 20 ? CAI Y01 2321 A 1 HETATM 21 C CAZ Y01 . . . V 5 198.898 178.09 189.495 1 20 ? CAZ Y01 2321 A 1 HETATM 22 C CAV Y01 . . . V 5 199.806 178.706 190.578 1 20 ? CAV Y01 2321 A 1 HETATM 23 C CBH Y01 . . . V 5 197.49 178.1 189.941 1 20 ? CBH Y01 2321 A 1 HETATM 24 C CAD Y01 . . . V 5 197.122 179.551 190.265 1 20 ? CAD Y01 2321 A 1 HETATM 25 C CAT Y01 . . . V 5 197.333 177.288 191.238 1 20 ? CAT Y01 2321 A 1 HETATM 26 C CAR Y01 . . . V 5 198.166 177.925 192.359 1 20 ? CAR Y01 2321 A 1 HETATM 27 C CBC Y01 . . . V 5 199.601 178.145 191.984 1 20 ? CBC Y01 2321 A 1 HETATM 28 O OAW Y01 . . . V 5 200.173 179.119 192.876 1 20 ? OAW Y01 2321 A 1 HETATM 29 C CAY Y01 . . . V 5 200.588 178.599 194.124 1 20 ? CAY Y01 2321 A 1 HETATM 30 O OAG Y01 . . . V 5 199.962 177.729 194.627 1 20 ? OAG Y01 2321 A 1 HETATM 31 C CAM Y01 . . . V 5 201.843 179.165 194.822 1 20 ? CAM Y01 2321 A 1 HETATM 32 C CAL Y01 . . . V 5 201.935 178.6 196.25 1 20 ? CAL Y01 2321 A 1 HETATM 33 C CAX Y01 . . . V 5 201.091 179.472 197.192 1 20 ? CAX Y01 2321 A 1 HETATM 34 O OAH Y01 . . . V 5 200.325 180.348 196.715 1 20 -1 OAH Y01 2321 A 1 HETATM 35 O OAF Y01 . . . V 5 201.16 179.306 198.436 1 20 ? OAF Y01 2321 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 35 #