data_6KZO
#
_model_server_result.job_id            EFIoKbcNM7Clyubiu7BA_g 
_model_server_result.datetime_utc      '2024-11-21 14:17:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6kzo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"W","auth_seq_id":2322}' 
#
_entry.id    6KZO 
#
_exptl.entry_id    6KZO 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              486.726 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CHOLESTEROL HEMISUCCINATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6KZO 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6KZO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 V N N 
? 5 W N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 104 A CYS 104 1_555 A SG CYS 889 A CYS 889 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? 
disulf ? disulf2 A SG CYS 271 A CYS 271 1_555 A SG CYS 282 A CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.911 ? 
disulf ? disulf3 A SG CYS 1418 A CYS 1418 1_555 A SG CYS 1432 A CYS 1432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf4 A SG CYS 1747 A CYS 1747 1_555 A SG CYS 1753 A CYS 1753 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
covale ? covale1 A ND2 ASN 246 A ASN 246 1_555 D C1 NAG . A NAG 2303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? 
covale ? covale2 A ND2 ASN 322 A ASN 322 1_555 E C1 NAG . A NAG 2304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? 
covale ? covale3 A ND2 ASN 1425 A ASN 1425 1_555 F C1 NAG . A NAG 2305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.478 ? 
covale ? covale4 A ND2 ASN 1428 A ASN 1428 1_555 G C1 NAG . A NAG 2306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.517 ? 
covale ? covale5 A ND2 ASN 1675 A ASN 1675 1_555 H C1 NAG . A NAG 2307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.471 ? 
metalc ? metalc1 A OE1 GLU 354 A GLU 354 1_555 B CA CA . A CA 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.157 ? 
metalc ? metalc2 A OE2 GLU 354 A GLU 354 1_555 B CA CA . A CA 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? 
#
_chem_comp.formula           'C31 H50 O4' 
_chem_comp.formula_weight    486.726 
_chem_comp.id                Y01 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CHOLESTEROL HEMISUCCINATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA CBA Y01 sing 536 n n 
CBA CAB Y01 sing 537 n n 
CBA CAN Y01 sing 538 n n 
CAN CAJ Y01 sing 539 n n 
CAJ CAO Y01 sing 540 n n 
CAO CBB Y01 sing 541 n n 
CBB CAC Y01 sing 542 n n 
CBB CBE Y01 sing 543 n n 
CBE CAP Y01 sing 544 n n 
CBE CBI Y01 sing 545 n n 
CAP CAQ Y01 sing 546 n n 
CAQ CBG Y01 sing 547 n n 
CBG CBI Y01 sing 548 n n 
CBG CBD Y01 sing 549 n n 
CBI CAE Y01 sing 550 n n 
CBI CAU Y01 sing 551 n n 
CAU CAS Y01 sing 552 n n 
CAS CBF Y01 sing 553 n n 
CBF CBD Y01 sing 554 n n 
CBF CBH Y01 sing 555 n n 
CBD CAK Y01 sing 556 n n 
CAK CAI Y01 sing 557 n n 
CAI CAZ Y01 doub 558 n n 
CAZ CAV Y01 sing 559 n n 
CAZ CBH Y01 sing 560 n n 
CAV CBC Y01 sing 561 n n 
CBH CAD Y01 sing 562 n n 
CBH CAT Y01 sing 563 n n 
CAT CAR Y01 sing 564 n n 
CAR CBC Y01 sing 565 n n 
CBC OAW Y01 sing 566 n n 
OAW CAY Y01 sing 567 n n 
CAY OAG Y01 doub 568 n n 
CAY CAM Y01 sing 569 n n 
CAM CAL Y01 sing 570 n n 
CAL CAX Y01 sing 571 n n 
CAX OAH Y01 sing 572 n n 
CAX OAF Y01 doub 573 n n 
CAA HAA1 Y01 sing 574 n n 
CAA HAA2 Y01 sing 575 n n 
CAA HAA3 Y01 sing 576 n n 
CBA HBA Y01 sing 577 n n 
CAB HAB1 Y01 sing 578 n n 
CAB HAB2 Y01 sing 579 n n 
CAB HAB3 Y01 sing 580 n n 
CAN HAN1 Y01 sing 581 n n 
CAN HAN2 Y01 sing 582 n n 
CAJ HAJ1 Y01 sing 583 n n 
CAJ HAJ2 Y01 sing 584 n n 
CAO HAO1 Y01 sing 585 n n 
CAO HAO2 Y01 sing 586 n n 
CBB HBB Y01 sing 587 n n 
CAC HAC1 Y01 sing 588 n n 
CAC HAC2 Y01 sing 589 n n 
CAC HAC3 Y01 sing 590 n n 
CBE HBE Y01 sing 591 n n 
CAP HAP1 Y01 sing 592 n n 
CAP HAP2 Y01 sing 593 n n 
CAQ HAQ1 Y01 sing 594 n n 
CAQ HAQ2 Y01 sing 595 n n 
CBG HBG Y01 sing 596 n n 
CBD HBD Y01 sing 597 n n 
CAE HAE1 Y01 sing 598 n n 
CAE HAE2 Y01 sing 599 n n 
CAE HAE3 Y01 sing 600 n n 
CAU HAU1 Y01 sing 601 n n 
CAU HAU2 Y01 sing 602 n n 
CAS HAS1 Y01 sing 603 n n 
CAS HAS2 Y01 sing 604 n n 
CBF HBF Y01 sing 605 n n 
CAK HAK1 Y01 sing 606 n n 
CAK HAK2 Y01 sing 607 n n 
CAI HAI Y01 sing 608 n n 
CAV HAV1 Y01 sing 609 n n 
CAV HAV2 Y01 sing 610 n n 
CBC HBC Y01 sing 611 n n 
CAD HAD1 Y01 sing 612 n n 
CAD HAD2 Y01 sing 613 n n 
CAD HAD3 Y01 sing 614 n n 
CAT HAT1 Y01 sing 615 n n 
CAT HAT2 Y01 sing 616 n n 
CAR HAR1 Y01 sing 617 n n 
CAR HAR2 Y01 sing 618 n n 
CAM HAM1 Y01 sing 619 n n 
CAM HAM2 Y01 sing 620 n n 
CAL HAL1 Y01 sing 621 n n 
CAL HAL2 Y01 sing 622 n n 
OAH HAH Y01 sing 623 n n 
#
_atom_sites.entry_id                     6KZO 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 2301 2001 CA CA . 
C 2 CA A 1 2302 2002 CA CA . 
D 3 NAG A 1 2303 1 NAG NAG . 
E 3 NAG A 1 2304 2 NAG NAG . 
F 3 NAG A 1 2305 3 NAG NAG . 
G 3 NAG A 1 2306 4 NAG NAG . 
H 3 NAG A 1 2307 5 NAG NAG . 
I 4 3PE A 1 2308 1 3PE 3PE . 
J 4 3PE A 1 2309 2 3PE 3PE . 
K 4 3PE A 1 2310 3 3PE 3PE . 
L 4 3PE A 1 2311 4 3PE 3PE . 
M 4 3PE A 1 2312 5 3PE 3PE . 
N 4 3PE A 1 2313 6 3PE 3PE . 
O 4 3PE A 1 2314 7 3PE 3PE . 
P 4 3PE A 1 2315 8 3PE 3PE . 
Q 4 3PE A 1 2316 9 3PE 3PE . 
R 4 3PE A 1 2317 10 3PE 3PE . 
S 4 3PE A 1 2318 11 3PE 3PE . 
T 4 3PE A 1 2319 12 3PE 3PE . 
U 4 3PE A 1 2320 13 3PE 3PE . 
V 5 Y01 A 1 2321 3 Y01 LIG . 
W 5 Y01 A 1 2322 4 Y01 LIG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA Y01 . . . W 5 197.096 183.706 182.799 1 20 ? CAA Y01 2322 A 1 
HETATM 2 C CBA Y01 . . . W 5 197.407 183.173 184.214 1 20 ? CBA Y01 2322 A 1 
HETATM 3 C CAB Y01 . . . W 5 196.103 182.896 184.974 1 20 ? CAB Y01 2322 A 1 
HETATM 4 C CAN Y01 . . . W 5 198.257 184.214 184.99 1 20 ? CAN Y01 2322 A 1 
HETATM 5 C CAJ Y01 . . . W 5 198.581 183.675 186.425 1 20 ? CAJ Y01 2322 A 1 
HETATM 6 C CAO Y01 . . . W 5 199.525 184.671 187.167 1 20 ? CAO Y01 2322 A 1 
HETATM 7 C CBB Y01 . . . W 5 199.915 184.085 188.606 1 20 ? CBB Y01 2322 A 1 
HETATM 8 C CAC Y01 . . . W 5 200.549 182.675 188.422 1 20 ? CAC Y01 2322 A 1 
HETATM 9 C CBE Y01 . . . W 5 200.796 185.017 189.289 1 20 ? CBE Y01 2322 A 1 
HETATM 10 C CAP Y01 . . . W 5 200.167 186.446 189.458 1 20 ? CAP Y01 2322 A 1 
HETATM 11 C CAQ Y01 . . . W 5 201.112 187.14 190.721 1 20 ? CAQ Y01 2322 A 1 
HETATM 12 C CBG Y01 . . . W 5 201.882 185.858 191.4 1 20 ? CBG Y01 2322 A 1 
HETATM 13 C CBI Y01 . . . W 5 201.122 184.585 190.848 1 20 ? CBI Y01 2322 A 1 
HETATM 14 C CAE Y01 . . . W 5 199.733 184.597 191.584 1 20 ? CAE Y01 2322 A 1 
HETATM 15 C CAU Y01 . . . W 5 201.836 183.363 191.139 1 20 ? CAU Y01 2322 A 1 
HETATM 16 C CAS Y01 . . . W 5 202.118 183.245 192.768 1 20 ? CAS Y01 2322 A 1 
HETATM 17 C CBF Y01 . . . W 5 202.836 184.478 193.316 1 20 ? CBF Y01 2322 A 1 
HETATM 18 C CBD Y01 . . . W 5 202.134 185.775 192.908 1 20 ? CBD Y01 2322 A 1 
HETATM 19 C CAK Y01 . . . W 5 202.948 187.104 193.395 1 20 ? CAK Y01 2322 A 1 
HETATM 20 C CAI Y01 . . . W 5 203.24 187.083 194.886 1 20 ? CAI Y01 2322 A 1 
HETATM 21 C CAZ Y01 . . . W 5 203.618 185.586 195.569 1 20 ? CAZ Y01 2322 A 1 
HETATM 22 C CAV Y01 . . . W 5 203.75 185.464 197.102 1 20 ? CAV Y01 2322 A 1 
HETATM 23 C CBH Y01 . . . W 5 203.008 184.366 194.977 1 20 ? CBH Y01 2322 A 1 
HETATM 24 C CAD Y01 . . . W 5 201.573 184.169 195.54 1 20 ? CAD Y01 2322 A 1 
HETATM 25 C CAT Y01 . . . W 5 203.869 183.126 195.335 1 20 ? CAT Y01 2322 A 1 
HETATM 26 C CAR Y01 . . . W 5 204.012 182.983 196.86 1 20 ? CAR Y01 2322 A 1 
HETATM 27 C CBC Y01 . . . W 5 204.584 184.228 197.504 1 20 ? CBC Y01 2322 A 1 
HETATM 28 O OAW Y01 . . . W 5 204.698 184.12 198.964 1 20 ? OAW Y01 2322 A 1 
HETATM 29 C CAY Y01 . . . W 5 205.423 183.011 199.486 1 20 ? CAY Y01 2322 A 1 
HETATM 30 O OAG Y01 . . . W 5 204.98 181.912 199.4 1 20 ? OAG Y01 2322 A 1 
HETATM 31 C CAM Y01 . . . W 5 206.786 183.247 200.18 1 20 ? CAM Y01 2322 A 1 
HETATM 32 C CAL Y01 . . . W 5 207.319 181.942 200.813 1 20 ? CAL Y01 2322 A 1 
HETATM 33 C CAX Y01 . . . W 5 207.62 180.888 199.726 1 20 ? CAX Y01 2322 A 1 
HETATM 34 O OAH Y01 . . . W 5 208.084 179.754 200.032 1 20 -1 OAH Y01 2322 A 1 
HETATM 35 O OAF Y01 . . . W 5 207.404 181.161 198.517 1 20 ? OAF Y01 2322 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           35 
#