data_6KZP
#
_model_server_result.job_id            e-Xd4AtbDC1xYgH7Q7f9mA 
_model_server_result.datetime_utc      '2024-10-18 16:26:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6kzp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":2307}' 
#
_entry.id    6KZP 
#
_exptl.entry_id    6KZP 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              383.888 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ~{N}-[[1-[2-(~{tert}-butylamino)-2-oxidanylidene-ethyl]piperidin-4-yl]methyl]-3-chloranyl-5-fluoranyl-benzamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6KZP 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6KZP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             H 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 260 A CYS 241 1_555 A SG CYS 301 A CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf2 A SG CYS 290 A CYS 271 1_555 A SG CYS 342 A CYS 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 A SG CYS 1303 A CYS 1418 1_555 A SG CYS 1317 A CYS 1432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf4 A SG CYS 1632 A CYS 1747 1_555 A SG CYS 1638 A CYS 1753 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
covale ? covale1 A ND2 ASN 265 A ASN 246 1_555 D C1 NAG . A NAG 2303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? 
covale ? covale2 A ND2 ASN 341 A ASN 322 1_555 E C1 NAG . A NAG 2304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
covale ? covale3 A ND2 ASN 1310 A ASN 1425 1_555 F C1 NAG . A NAG 2305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale4 A ND2 ASN 1313 A ASN 1428 1_555 G C1 NAG . A NAG 2306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? 
metalc ? metalc1 A OE1 GLU 373 A GLU 354 1_555 B CA CA . A CA 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.819 ? 
metalc ? metalc2 A OE2 GLU 373 A GLU 354 1_555 B CA CA . A CA 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.989 ? 
metalc ? metalc3 A OE1 GLU 373 A GLU 354 1_555 C CA CA . A CA 2302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.945 ? 
metalc ? metalc4 A OE1 GLU 808 A GLU 923 1_555 B CA CA . A CA 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? 
metalc ? metalc5 A OD1 ASP 1348 A ASP 1463 1_555 B CA CA . A CA 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? 
#
_chem_comp.formula           'C19 H27 Cl F N3 O2' 
_chem_comp.formula_weight    383.888 
_chem_comp.id                DZR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ~{N}-[[1-[2-(~{tert}-butylamino)-2-oxidanylidene-ethyl]piperidin-4-yl]methyl]-3-chloranyl-5-fluoranyl-benzamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6KZP 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 2301 2001 CA CA . 
C 2 CA A 1 2302 2002 CA CA . 
D 3 NAG A 1 2303 1 NAG NAG . 
E 3 NAG A 1 2304 2 NAG NAG . 
F 3 NAG A 1 2305 3 NAG NAG . 
G 3 NAG A 1 2306 4 NAG NAG . 
H 4 DZR A 1 2307 1 DZR Z . 
I 5 3PE A 1 2308 15 3PE 3PE . 
J 5 3PE A 1 2309 16 3PE 3PE . 
K 5 3PE A 1 2310 17 3PE 3PE . 
L 5 3PE A 1 2311 18 3PE 3PE . 
M 5 3PE A 1 2312 21 3PE 3PE . 
N 5 3PE A 1 2313 22 3PE 3PE . 
O 5 3PE A 1 2314 23 3PE 3PE . 
P 5 3PE A 1 2315 24 3PE 3PE . 
Q 6 Y01 A 1 2316 1 Y01 LIG . 
R 6 Y01 A 1 2317 2 Y01 LIG . 
S 6 Y01 A 1 2318 3 Y01 LIG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C08 DZR . . . H 4 172.216 172.842 185.898 1 26.24 ? C08 DZR 2307 A 1 
HETATM 2 C C09 DZR . . . H 4 171.449 173.106 184.618 1 26.24 ? C09 DZR 2307 A 1 
HETATM 3 C C10 DZR . . . H 4 173.498 172.152 185.466 1 26.24 ? C10 DZR 2307 A 1 
HETATM 4 C C11 DZR . . . H 4 172.303 173.847 183.598 1 26.24 ? C11 DZR 2307 A 1 
HETATM 5 C C12 DZR . . . H 4 174.206 172.96 184.376 1 26.24 ? C12 DZR 2307 A 1 
HETATM 6 C C13 DZR . . . H 4 172.533 174.174 186.564 1 26.24 ? C13 DZR 2307 A 1 
HETATM 7 C C14 DZR . . . H 4 173.471 172.445 182.356 1 26.24 ? C14 DZR 2307 A 1 
HETATM 8 C C15 DZR . . . H 4 174.149 172.989 181.085 1 26.24 ? C15 DZR 2307 A 1 
HETATM 9 C C16 DZR . . . H 4 174.831 172.629 178.672 1 26.24 ? C16 DZR 2307 A 1 
HETATM 10 C C17 DZR . . . H 4 171.511 176.362 187.185 1 26.24 ? C17 DZR 2307 A 1 
HETATM 11 C C18 DZR . . . H 4 173.935 173.65 177.986 1 26.24 ? C18 DZR 2307 A 1 
HETATM 12 C C19 DZR . . . H 4 175.034 171.439 177.744 1 26.24 ? C19 DZR 2307 A 1 
HETATM 13 C C20 DZR . . . H 4 176.176 173.284 178.962 1 26.24 ? C20 DZR 2307 A 1 
HETATM 14 C C21 DZR . . . H 4 170.319 177.298 187.273 1 26.24 ? C21 DZR 2307 A 1 
HETATM 15 C C22 DZR . . . H 4 169.257 177.152 186.404 1 26.24 ? C22 DZR 2307 A 1 
HETATM 16 C C23 DZR . . . H 4 170.302 178.294 188.227 1 26.24 ? C23 DZR 2307 A 1 
HETATM 17 C C24 DZR . . . H 4 168.172 178.004 186.489 1 26.24 ? C24 DZR 2307 A 1 
HETATM 18 C C25 DZR . . . H 4 169.219 179.142 188.309 1 26.24 ? C25 DZR 2307 A 1 
HETATM 19 C C26 DZR . . . H 4 168.154 179 187.44 1 26.24 ? C26 DZR 2307 A 1 
HETATM 20 F F02 DZR . . . H 4 169.207 180.124 189.251 1 26.24 ? F02 DZR 2307 A 1 
HETATM 21 N N05 DZR . . . H 4 173.472 173.314 183.341 1 26.24 ? N05 DZR 2307 A 1 
HETATM 22 N N06 DZR . . . H 4 171.369 175.032 186.627 1 26.24 ? N06 DZR 2307 A 1 
HETATM 23 N N07 DZR . . . H 4 174.211 172.157 179.898 1 26.24 ? N07 DZR 2307 A 1 
HETATM 24 O O03 DZR . . . H 4 174.63 174.072 181.035 1 26.24 ? O03 DZR 2307 A 1 
HETATM 25 O O04 DZR . . . H 4 172.562 176.731 187.572 1 26.24 ? O04 DZR 2307 A 1 
HETATM 26 CL CL1 DZR . . . H 4 166.807 177.815 185.365 1 26.24 ? CL1 DZR 2307 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           26 
#