data_6KZP # _model_server_result.job_id 3J7VkYK3VsdoIu2ACcSdVA _model_server_result.datetime_utc '2024-10-18 16:19:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kzp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":2311}' # _entry.id 6KZP # _exptl.entry_id 6KZP _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 748.065 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6KZP _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KZP _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 J N N ? 5 K N N ? 5 L N N ? 5 M N N ? 5 N N N ? 5 O N N ? 5 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 260 A CYS 241 1_555 A SG CYS 301 A CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 A SG CYS 290 A CYS 271 1_555 A SG CYS 342 A CYS 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 1303 A CYS 1418 1_555 A SG CYS 1317 A CYS 1432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 A SG CYS 1632 A CYS 1747 1_555 A SG CYS 1638 A CYS 1753 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? covale ? covale1 A ND2 ASN 265 A ASN 246 1_555 D C1 NAG . A NAG 2303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale2 A ND2 ASN 341 A ASN 322 1_555 E C1 NAG . A NAG 2304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale3 A ND2 ASN 1310 A ASN 1425 1_555 F C1 NAG . A NAG 2305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale4 A ND2 ASN 1313 A ASN 1428 1_555 G C1 NAG . A NAG 2306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? metalc ? metalc1 A OE1 GLU 373 A GLU 354 1_555 B CA CA . A CA 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.819 ? metalc ? metalc2 A OE2 GLU 373 A GLU 354 1_555 B CA CA . A CA 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.989 ? metalc ? metalc3 A OE1 GLU 373 A GLU 354 1_555 C CA CA . A CA 2302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.945 ? metalc ? metalc4 A OE1 GLU 808 A GLU 923 1_555 B CA CA . A CA 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? metalc ? metalc5 A OD1 ASP 1348 A ASP 1463 1_555 B CA CA . A CA 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? # _chem_comp.formula 'C41 H82 N O8 P' _chem_comp.formula_weight 748.065 _chem_comp.id 3PE _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-SN-PHOSPHATIDYLETHANOLAMINE # _atom_sites.entry_id 6KZP _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 2301 2001 CA CA . C 2 CA A 1 2302 2002 CA CA . D 3 NAG A 1 2303 1 NAG NAG . E 3 NAG A 1 2304 2 NAG NAG . F 3 NAG A 1 2305 3 NAG NAG . G 3 NAG A 1 2306 4 NAG NAG . H 4 DZR A 1 2307 1 DZR Z . I 5 3PE A 1 2308 15 3PE 3PE . J 5 3PE A 1 2309 16 3PE 3PE . K 5 3PE A 1 2310 17 3PE 3PE . L 5 3PE A 1 2311 18 3PE 3PE . M 5 3PE A 1 2312 21 3PE 3PE . N 5 3PE A 1 2313 22 3PE 3PE . O 5 3PE A 1 2314 23 3PE 3PE . P 5 3PE A 1 2315 24 3PE 3PE . Q 6 Y01 A 1 2316 1 Y01 LIG . R 6 Y01 A 1 2317 2 Y01 LIG . S 6 Y01 A 1 2318 3 Y01 LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 3PE . . . L 5 154.489 167.903 210.216 1 31.31 ? P 3PE 2311 A 1 HETATM 2 N N 3PE . . . L 5 155.968 163.769 211.427 1 31.31 ? N 3PE 2311 A 1 HETATM 3 O O11 3PE . . . L 5 153.696 166.832 209.248 1 31.31 ? O11 3PE 2311 A 1 HETATM 4 O O12 3PE . . . L 5 153.583 168.519 211.177 1 31.31 ? O12 3PE 2311 A 1 HETATM 5 O O13 3PE . . . L 5 155.754 167.18 210.987 1 31.31 ? O13 3PE 2311 A 1 HETATM 6 O O14 3PE . . . L 5 154.902 169.063 209.439 1 31.31 ? O14 3PE 2311 A 1 HETATM 7 C C11 3PE . . . L 5 155.472 166.116 211.848 1 31.31 ? C11 3PE 2311 A 1 HETATM 8 C C12 3PE . . . L 5 156.565 165.056 211.735 1 31.31 ? C12 3PE 2311 A 1 HETATM 9 C C1 3PE . . . L 5 153.169 167.312 208.048 1 31.31 ? C1 3PE 2311 A 1 HETATM 10 C C2 3PE . . . L 5 153.291 166.243 206.968 1 31.31 ? C2 3PE 2311 A 1 HETATM 11 C C3 3PE . . . L 5 152.702 164.929 207.474 1 31.31 ? C3 3PE 2311 A 1 HETATM 12 O O31 3PE . . . L 5 151.57 164.618 206.714 1 31.31 ? O31 3PE 2311 A 1 HETATM 13 O O32 3PE . . . L 5 151.924 162.43 207.078 1 31.31 ? O32 3PE 2311 A 1 HETATM 14 C C31 3PE . . . L 5 151.414 163.261 206.404 1 31.31 ? C31 3PE 2311 A 1 HETATM 15 C C32 3PE . . . L 5 150.583 162.847 205.19 1 31.31 ? C32 3PE 2311 A 1 HETATM 16 C C33 3PE . . . L 5 150.757 161.352 204.943 1 31.31 ? C33 3PE 2311 A 1 HETATM 17 O O21 3PE . . . L 5 152.585 166.66 205.837 1 31.31 ? O21 3PE 2311 A 1 HETATM 18 O O22 3PE . . . L 5 154.522 166.781 204.71 1 31.31 ? O22 3PE 2311 A 1 HETATM 19 C C21 3PE . . . L 5 153.347 166.845 204.679 1 31.31 ? C21 3PE 2311 A 1 HETATM 20 C C22 3PE . . . L 5 152.666 167.14 203.351 1 31.31 ? C22 3PE 2311 A 1 HETATM 21 C C23 3PE . . . L 5 153.627 167.962 202.506 1 31.31 ? C23 3PE 2311 A 1 HETATM 22 C C24 3PE . . . L 5 154.122 167.082 201.371 1 31.31 ? C24 3PE 2311 A 1 HETATM 23 C C25 3PE . . . L 5 154.827 167.968 200.356 1 31.31 ? C25 3PE 2311 A 1 HETATM 24 C C26 3PE . . . L 5 153.94 168.117 199.127 1 31.31 ? C26 3PE 2311 A 1 HETATM 25 C C27 3PE . . . L 5 154.655 169.009 198.12 1 31.31 ? C27 3PE 2311 A 1 HETATM 26 C C28 3PE . . . L 5 153.853 169.025 196.829 1 31.31 ? C28 3PE 2311 A 1 HETATM 27 C C29 3PE . . . L 5 153.983 170.397 196.192 1 31.31 ? C29 3PE 2311 A 1 HETATM 28 C C2A 3PE . . . L 5 153.954 170.25 194.674 1 31.31 ? C2A 3PE 2311 A 1 HETATM 29 C C2B 3PE . . . L 5 154.88 171.282 194.033 1 31.31 ? C2B 3PE 2311 A 1 HETATM 30 C C2C 3PE . . . L 5 154.089 172.224 193.125 1 31.31 ? C2C 3PE 2311 A 1 HETATM 31 C C2D 3PE . . . L 5 153.395 173.293 193.965 1 31.31 ? C2D 3PE 2311 A 1 HETATM 32 C C2E 3PE . . . L 5 152.825 174.392 193.072 1 31.31 ? C2E 3PE 2311 A 1 HETATM 33 C C2F 3PE . . . L 5 153.823 175.541 192.965 1 31.31 ? C2F 3PE 2311 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 80 _model_server_stats.create_model_time_ms 78 _model_server_stats.query_time_ms 391 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 33 #