data_6KZP # _model_server_result.job_id V2qAAwcJPo_mVzV4c1mosw _model_server_result.datetime_utc '2024-11-26 21:14:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kzp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":2313}' # _entry.id 6KZP # _exptl.entry_id 6KZP _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 748.065 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-Distearoyl-sn-glycerophosphoethanolamine _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6KZP _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KZP _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 J N N ? 5 K N N ? 5 L N N ? 5 M N N ? 5 N N N ? 5 O N N ? 5 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 260 A CYS 241 1_555 A SG CYS 301 A CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 A SG CYS 290 A CYS 271 1_555 A SG CYS 342 A CYS 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 1303 A CYS 1418 1_555 A SG CYS 1317 A CYS 1432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 A SG CYS 1632 A CYS 1747 1_555 A SG CYS 1638 A CYS 1753 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? covale ? covale1 A ND2 ASN 265 A ASN 246 1_555 D C1 NAG . A NAG 2303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale2 A ND2 ASN 341 A ASN 322 1_555 E C1 NAG . A NAG 2304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale3 A ND2 ASN 1310 A ASN 1425 1_555 F C1 NAG . A NAG 2305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale4 A ND2 ASN 1313 A ASN 1428 1_555 G C1 NAG . A NAG 2306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? metalc ? metalc1 A OE1 GLU 373 A GLU 354 1_555 B CA CA . A CA 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.819 ? metalc ? metalc2 A OE2 GLU 373 A GLU 354 1_555 B CA CA . A CA 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.989 ? metalc ? metalc3 A OE1 GLU 373 A GLU 354 1_555 C CA CA . A CA 2302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.945 ? metalc ? metalc4 A OE1 GLU 808 A GLU 923 1_555 B CA CA . A CA 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? metalc ? metalc5 A OD1 ASP 1348 A ASP 1463 1_555 B CA CA . A CA 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? # _chem_comp.formula 'C41 H82 N O8 P' _chem_comp.formula_weight 748.065 _chem_comp.id 3PE _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-Distearoyl-sn-glycerophosphoethanolamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-SN-PHOSPHATIDYLETHANOLAMINE;1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O11 3PE sing 1 n n P O12 3PE sing 2 n n P O13 3PE sing 3 n n P O14 3PE doub 4 n n N C12 3PE sing 5 n n N HN1 3PE sing 6 n n N HN2 3PE sing 7 n n O11 C1 3PE sing 8 n n O13 C11 3PE sing 9 n n C11 C12 3PE sing 10 n n C11 H111 3PE sing 11 n n C11 H112 3PE sing 12 n n C12 H121 3PE sing 13 n n C12 H122 3PE sing 14 n n C1 C2 3PE sing 15 n n C1 H11 3PE sing 16 n n C1 H12 3PE sing 17 n n C2 C3 3PE sing 18 n n C2 O21 3PE sing 19 n n C2 H2 3PE sing 20 n n C3 O31 3PE sing 21 n n C3 H31 3PE sing 22 n n C3 H32 3PE sing 23 n n O31 C31 3PE sing 24 n n O32 C31 3PE doub 25 n n C31 C32 3PE sing 26 n n C32 C33 3PE sing 27 n n C32 H321 3PE sing 28 n n C32 H322 3PE sing 29 n n C33 C34 3PE sing 30 n n C33 H331 3PE sing 31 n n C33 H332 3PE sing 32 n n C34 C35 3PE sing 33 n n C34 H341 3PE sing 34 n n C34 H342 3PE sing 35 n n C35 C36 3PE sing 36 n n C35 H351 3PE sing 37 n n C35 H352 3PE sing 38 n n C36 C37 3PE sing 39 n n C36 H361 3PE sing 40 n n C36 H362 3PE sing 41 n n C37 C38 3PE sing 42 n n C37 H371 3PE sing 43 n n C37 H372 3PE sing 44 n n C38 C39 3PE sing 45 n n C38 H381 3PE sing 46 n n C38 H382 3PE sing 47 n n C39 C3A 3PE sing 48 n n C39 H391 3PE sing 49 n n C39 H392 3PE sing 50 n n C3A C3B 3PE sing 51 n n C3A H3A1 3PE sing 52 n n C3A H3A2 3PE sing 53 n n C3B C3C 3PE sing 54 n n C3B H3B1 3PE sing 55 n n C3B H3B2 3PE sing 56 n n C3C C3D 3PE sing 57 n n C3C H3C1 3PE sing 58 n n C3C H3C2 3PE sing 59 n n C3D C3E 3PE sing 60 n n C3D H3D1 3PE sing 61 n n C3D H3D2 3PE sing 62 n n C3E C3F 3PE sing 63 n n C3E H3E1 3PE sing 64 n n C3E H3E2 3PE sing 65 n n C3F C3G 3PE sing 66 n n C3F H3F1 3PE sing 67 n n C3F H3F2 3PE sing 68 n n C3G C3H 3PE sing 69 n n C3G H3G1 3PE sing 70 n n C3G H3G2 3PE sing 71 n n C3H C3I 3PE sing 72 n n C3H H3H1 3PE sing 73 n n C3H H3H2 3PE sing 74 n n C3I H3I1 3PE sing 75 n n C3I H3I2 3PE sing 76 n n C3I H3I3 3PE sing 77 n n O21 C21 3PE sing 78 n n O22 C21 3PE doub 79 n n C21 C22 3PE sing 80 n n C22 C23 3PE sing 81 n n C22 H221 3PE sing 82 n n C22 H222 3PE sing 83 n n C23 C24 3PE sing 84 n n C23 H231 3PE sing 85 n n C23 H232 3PE sing 86 n n C24 C25 3PE sing 87 n n C24 H241 3PE sing 88 n n C24 H242 3PE sing 89 n n C25 C26 3PE sing 90 n n C25 H251 3PE sing 91 n n C25 H252 3PE sing 92 n n C26 C27 3PE sing 93 n n C26 H261 3PE sing 94 n n C26 H262 3PE sing 95 n n C27 C28 3PE sing 96 n n C27 H271 3PE sing 97 n n C27 H272 3PE sing 98 n n C28 C29 3PE sing 99 n n C28 H281 3PE sing 100 n n C28 H282 3PE sing 101 n n C29 C2A 3PE sing 102 n n C29 H291 3PE sing 103 n n C29 H292 3PE sing 104 n n C2A C2B 3PE sing 105 n n C2A H2A1 3PE sing 106 n n C2A H2A2 3PE sing 107 n n C2B C2C 3PE sing 108 n n C2B H2B1 3PE sing 109 n n C2B H2B2 3PE sing 110 n n C2C C2D 3PE sing 111 n n C2C H2C1 3PE sing 112 n n C2C H2C2 3PE sing 113 n n C2D C2E 3PE sing 114 n n C2D H2D1 3PE sing 115 n n C2D H2D2 3PE sing 116 n n C2E C2F 3PE sing 117 n n C2E H2E1 3PE sing 118 n n C2E H2E2 3PE sing 119 n n C2F C2G 3PE sing 120 n n C2F H2F1 3PE sing 121 n n C2F H2F2 3PE sing 122 n n C2G C2H 3PE sing 123 n n C2G H2G1 3PE sing 124 n n C2G H2G2 3PE sing 125 n n C2H C2I 3PE sing 126 n n C2H H2H1 3PE sing 127 n n C2H H2H2 3PE sing 128 n n C2I H2I1 3PE sing 129 n n C2I H2I2 3PE sing 130 n n C2I H2I3 3PE sing 131 n n O12 H1 3PE sing 132 n n # _atom_sites.entry_id 6KZP _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 2301 2001 CA CA . C 2 CA A 1 2302 2002 CA CA . D 3 NAG A 1 2303 1 NAG NAG . E 3 NAG A 1 2304 2 NAG NAG . F 3 NAG A 1 2305 3 NAG NAG . G 3 NAG A 1 2306 4 NAG NAG . H 4 DZR A 1 2307 1 DZR Z . I 5 3PE A 1 2308 15 3PE 3PE . J 5 3PE A 1 2309 16 3PE 3PE . K 5 3PE A 1 2310 17 3PE 3PE . L 5 3PE A 1 2311 18 3PE 3PE . M 5 3PE A 1 2312 21 3PE 3PE . N 5 3PE A 1 2313 22 3PE 3PE . O 5 3PE A 1 2314 23 3PE 3PE . P 5 3PE A 1 2315 24 3PE 3PE . Q 6 Y01 A 1 2316 1 Y01 LIG . R 6 Y01 A 1 2317 2 Y01 LIG . S 6 Y01 A 1 2318 3 Y01 LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 3PE . . . N 5 177.607 171.801 184.245 1 33.41 ? P 3PE 2313 A 1 HETATM 2 N N 3PE . . . N 5 176.723 168.002 185.523 1 33.41 ? N 3PE 2313 A 1 HETATM 3 O O11 3PE . . . N 5 177.961 172.214 182.675 1 33.41 ? O11 3PE 2313 A 1 HETATM 4 O O12 3PE . . . N 5 177.76 172.905 185.177 1 33.41 ? O12 3PE 2313 A 1 HETATM 5 O O13 3PE . . . N 5 178.534 170.493 184.614 1 33.41 ? O13 3PE 2313 A 1 HETATM 6 O O14 3PE . . . N 5 176.191 171.51 184.388 1 33.41 ? O14 3PE 2313 A 1 HETATM 7 C C11 3PE . . . N 5 178.327 169.794 185.809 1 33.41 ? C11 3PE 2313 A 1 HETATM 8 C C12 3PE . . . N 5 178.141 168.307 185.515 1 33.41 ? C12 3PE 2313 A 1 HETATM 9 C C1 3PE . . . N 5 178.593 173.413 182.301 1 33.41 ? C1 3PE 2313 A 1 HETATM 10 C C2 3PE . . . N 5 180.115 173.255 182.215 1 33.41 ? C2 3PE 2313 A 1 HETATM 11 C C3 3PE . . . N 5 180.714 174.163 181.13 1 33.41 ? C3 3PE 2313 A 1 HETATM 12 O O31 3PE . . . N 5 180.845 173.556 179.864 1 33.41 ? O31 3PE 2313 A 1 HETATM 13 O O32 3PE . . . N 5 180.77 174.629 177.91 1 33.41 ? O32 3PE 2313 A 1 HETATM 14 C C31 3PE . . . N 5 181.391 174.388 178.884 1 33.41 ? C31 3PE 2313 A 1 HETATM 15 C C32 3PE . . . N 5 182.788 174.974 179.072 1 33.41 ? C32 3PE 2313 A 1 HETATM 16 C C33 3PE . . . N 5 183.492 175.049 177.719 1 33.41 ? C33 3PE 2313 A 1 HETATM 17 C C34 3PE . . . N 5 185.002 174.936 177.926 1 33.41 ? C34 3PE 2313 A 1 HETATM 18 C C35 3PE . . . N 5 185.762 176.204 177.541 1 33.41 ? C35 3PE 2313 A 1 HETATM 19 C C36 3PE . . . N 5 187.16 175.821 177.051 1 33.41 ? C36 3PE 2313 A 1 HETATM 20 C C37 3PE . . . N 5 187.682 174.632 177.858 1 33.41 ? C37 3PE 2313 A 1 HETATM 21 C C38 3PE . . . N 5 189.04 174.185 177.324 1 33.41 ? C38 3PE 2313 A 1 HETATM 22 C C39 3PE . . . N 5 188.849 173.316 176.084 1 33.41 ? C39 3PE 2313 A 1 HETATM 23 C C3A 3PE . . . N 5 190.142 172.557 175.8 1 33.41 ? C3A 3PE 2313 A 1 HETATM 24 C C3B 3PE . . . N 5 189.817 171.226 175.125 1 33.41 ? C3B 3PE 2313 A 1 HETATM 25 O O21 3PE . . . N 5 180.593 173.608 183.485 1 33.41 ? O21 3PE 2313 A 1 HETATM 26 O O22 3PE . . . N 5 182.685 173.191 184.162 1 33.41 ? O22 3PE 2313 A 1 HETATM 27 C C21 3PE . . . N 5 181.942 173.945 183.63 1 33.41 ? C21 3PE 2313 A 1 HETATM 28 C C22 3PE . . . N 5 182.458 175.289 183.131 1 33.41 ? C22 3PE 2313 A 1 HETATM 29 C C23 3PE . . . N 5 183.639 175.712 184 1 33.41 ? C23 3PE 2313 A 1 HETATM 30 C C24 3PE . . . N 5 183.789 177.226 183.923 1 33.41 ? C24 3PE 2313 A 1 HETATM 31 C C25 3PE . . . N 5 184.791 177.581 182.835 1 33.41 ? C25 3PE 2313 A 1 HETATM 32 C C26 3PE . . . N 5 184.233 178.743 182.024 1 33.41 ? C26 3PE 2313 A 1 HETATM 33 C C27 3PE . . . N 5 185.034 178.884 180.737 1 33.41 ? C27 3PE 2313 A 1 HETATM 34 C C28 3PE . . . N 5 186.468 179.28 181.079 1 33.41 ? C28 3PE 2313 A 1 HETATM 35 C C29 3PE . . . N 5 187.219 179.627 179.797 1 33.41 ? C29 3PE 2313 A 1 HETATM 36 C C2A 3PE . . . N 5 188.635 180.076 180.148 1 33.41 ? C2A 3PE 2313 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 36 #