data_6KZP # _model_server_result.job_id NMacR6FrWhF9NGQJbqANfw _model_server_result.datetime_utc '2024-11-26 21:04:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kzp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":2317}' # _entry.id 6KZP # _exptl.entry_id 6KZP _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6KZP _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KZP _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 Q N N ? 6 R N N ? 6 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 260 A CYS 241 1_555 A SG CYS 301 A CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 A SG CYS 290 A CYS 271 1_555 A SG CYS 342 A CYS 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 1303 A CYS 1418 1_555 A SG CYS 1317 A CYS 1432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 A SG CYS 1632 A CYS 1747 1_555 A SG CYS 1638 A CYS 1753 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? covale ? covale1 A ND2 ASN 265 A ASN 246 1_555 D C1 NAG . A NAG 2303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale2 A ND2 ASN 341 A ASN 322 1_555 E C1 NAG . A NAG 2304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale3 A ND2 ASN 1310 A ASN 1425 1_555 F C1 NAG . A NAG 2305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale4 A ND2 ASN 1313 A ASN 1428 1_555 G C1 NAG . A NAG 2306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? metalc ? metalc1 A OE1 GLU 373 A GLU 354 1_555 B CA CA . A CA 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.819 ? metalc ? metalc2 A OE2 GLU 373 A GLU 354 1_555 B CA CA . A CA 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.989 ? metalc ? metalc3 A OE1 GLU 373 A GLU 354 1_555 C CA CA . A CA 2302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.945 ? metalc ? metalc4 A OE1 GLU 808 A GLU 923 1_555 B CA CA . A CA 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? metalc ? metalc5 A OD1 ASP 1348 A ASP 1463 1_555 B CA CA . A CA 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 590 n n CBA CAB Y01 sing 591 n n CBA CAN Y01 sing 592 n n CAN CAJ Y01 sing 593 n n CAJ CAO Y01 sing 594 n n CAO CBB Y01 sing 595 n n CBB CAC Y01 sing 596 n n CBB CBE Y01 sing 597 n n CBE CAP Y01 sing 598 n n CBE CBI Y01 sing 599 n n CAP CAQ Y01 sing 600 n n CAQ CBG Y01 sing 601 n n CBG CBI Y01 sing 602 n n CBG CBD Y01 sing 603 n n CBI CAE Y01 sing 604 n n CBI CAU Y01 sing 605 n n CAU CAS Y01 sing 606 n n CAS CBF Y01 sing 607 n n CBF CBD Y01 sing 608 n n CBF CBH Y01 sing 609 n n CBD CAK Y01 sing 610 n n CAK CAI Y01 sing 611 n n CAI CAZ Y01 doub 612 n n CAZ CAV Y01 sing 613 n n CAZ CBH Y01 sing 614 n n CAV CBC Y01 sing 615 n n CBH CAD Y01 sing 616 n n CBH CAT Y01 sing 617 n n CAT CAR Y01 sing 618 n n CAR CBC Y01 sing 619 n n CBC OAW Y01 sing 620 n n OAW CAY Y01 sing 621 n n CAY OAG Y01 doub 622 n n CAY CAM Y01 sing 623 n n CAM CAL Y01 sing 624 n n CAL CAX Y01 sing 625 n n CAX OAH Y01 sing 626 n n CAX OAF Y01 doub 627 n n CAA HAA1 Y01 sing 628 n n CAA HAA2 Y01 sing 629 n n CAA HAA3 Y01 sing 630 n n CBA HBA Y01 sing 631 n n CAB HAB1 Y01 sing 632 n n CAB HAB2 Y01 sing 633 n n CAB HAB3 Y01 sing 634 n n CAN HAN1 Y01 sing 635 n n CAN HAN2 Y01 sing 636 n n CAJ HAJ1 Y01 sing 637 n n CAJ HAJ2 Y01 sing 638 n n CAO HAO1 Y01 sing 639 n n CAO HAO2 Y01 sing 640 n n CBB HBB Y01 sing 641 n n CAC HAC1 Y01 sing 642 n n CAC HAC2 Y01 sing 643 n n CAC HAC3 Y01 sing 644 n n CBE HBE Y01 sing 645 n n CAP HAP1 Y01 sing 646 n n CAP HAP2 Y01 sing 647 n n CAQ HAQ1 Y01 sing 648 n n CAQ HAQ2 Y01 sing 649 n n CBG HBG Y01 sing 650 n n CBD HBD Y01 sing 651 n n CAE HAE1 Y01 sing 652 n n CAE HAE2 Y01 sing 653 n n CAE HAE3 Y01 sing 654 n n CAU HAU1 Y01 sing 655 n n CAU HAU2 Y01 sing 656 n n CAS HAS1 Y01 sing 657 n n CAS HAS2 Y01 sing 658 n n CBF HBF Y01 sing 659 n n CAK HAK1 Y01 sing 660 n n CAK HAK2 Y01 sing 661 n n CAI HAI Y01 sing 662 n n CAV HAV1 Y01 sing 663 n n CAV HAV2 Y01 sing 664 n n CBC HBC Y01 sing 665 n n CAD HAD1 Y01 sing 666 n n CAD HAD2 Y01 sing 667 n n CAD HAD3 Y01 sing 668 n n CAT HAT1 Y01 sing 669 n n CAT HAT2 Y01 sing 670 n n CAR HAR1 Y01 sing 671 n n CAR HAR2 Y01 sing 672 n n CAM HAM1 Y01 sing 673 n n CAM HAM2 Y01 sing 674 n n CAL HAL1 Y01 sing 675 n n CAL HAL2 Y01 sing 676 n n OAH HAH Y01 sing 677 n n # _atom_sites.entry_id 6KZP _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 2301 2001 CA CA . C 2 CA A 1 2302 2002 CA CA . D 3 NAG A 1 2303 1 NAG NAG . E 3 NAG A 1 2304 2 NAG NAG . F 3 NAG A 1 2305 3 NAG NAG . G 3 NAG A 1 2306 4 NAG NAG . H 4 DZR A 1 2307 1 DZR Z . I 5 3PE A 1 2308 15 3PE 3PE . J 5 3PE A 1 2309 16 3PE 3PE . K 5 3PE A 1 2310 17 3PE 3PE . L 5 3PE A 1 2311 18 3PE 3PE . M 5 3PE A 1 2312 21 3PE 3PE . N 5 3PE A 1 2313 22 3PE 3PE . O 5 3PE A 1 2314 23 3PE 3PE . P 5 3PE A 1 2315 24 3PE 3PE . Q 6 Y01 A 1 2316 1 Y01 LIG . R 6 Y01 A 1 2317 2 Y01 LIG . S 6 Y01 A 1 2318 3 Y01 LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . R 6 191.382 178.893 183.195 1 28.61 ? CAA Y01 2317 A 1 HETATM 2 C CBA Y01 . . . R 6 189.948 178.976 183.747 1 28.61 ? CBA Y01 2317 A 1 HETATM 3 C CAB Y01 . . . R 6 189.449 180.416 183.648 1 28.61 ? CAB Y01 2317 A 1 HETATM 4 C CAN Y01 . . . R 6 189.935 178.523 185.226 1 28.61 ? CAN Y01 2317 A 1 HETATM 5 C CAJ Y01 . . . R 6 190.764 179.522 186.092 1 28.61 ? CAJ Y01 2317 A 1 HETATM 6 C CAO Y01 . . . R 6 192.281 179.24 185.883 1 28.61 ? CAO Y01 2317 A 1 HETATM 7 C CBB Y01 . . . R 6 192.898 178.644 187.221 1 28.61 ? CBB Y01 2317 A 1 HETATM 8 C CAC Y01 . . . R 6 191.893 177.633 187.821 1 28.61 ? CAC Y01 2317 A 1 HETATM 9 C CBE Y01 . . . R 6 194.14 177.988 186.96 1 28.61 ? CBE Y01 2317 A 1 HETATM 10 C CAP Y01 . . . R 6 194.926 178.705 185.822 1 28.61 ? CAP Y01 2317 A 1 HETATM 11 C CAQ Y01 . . . R 6 196.593 178.494 186.224 1 28.61 ? CAQ Y01 2317 A 1 HETATM 12 C CBG Y01 . . . R 6 196.585 178.029 187.8 1 28.61 ? CBG Y01 2317 A 1 HETATM 13 C CBI Y01 . . . R 6 195.104 178.118 188.288 1 28.61 ? CBI Y01 2317 A 1 HETATM 14 C CAE Y01 . . . R 6 194.938 179.556 188.752 1 28.61 ? CAE Y01 2317 A 1 HETATM 15 C CAU Y01 . . . R 6 194.904 177.343 189.453 1 28.61 ? CAU Y01 2317 A 1 HETATM 16 C CAS Y01 . . . R 6 195.961 177.771 190.652 1 28.61 ? CAS Y01 2317 A 1 HETATM 17 C CBF Y01 . . . R 6 197.398 177.87 190.158 1 28.61 ? CBF Y01 2317 A 1 HETATM 18 C CBD Y01 . . . R 6 197.481 178.661 188.858 1 28.61 ? CBD Y01 2317 A 1 HETATM 19 C CAK Y01 . . . R 6 198.999 178.804 188.297 1 28.61 ? CAK Y01 2317 A 1 HETATM 20 C CAI Y01 . . . R 6 199.908 179.415 189.35 1 28.61 ? CAI Y01 2317 A 1 HETATM 21 C CAZ Y01 . . . R 6 199.712 178.866 190.935 1 28.61 ? CAZ Y01 2317 A 1 HETATM 22 C CAV Y01 . . . R 6 200.429 179.605 192.08 1 28.61 ? CAV Y01 2317 A 1 HETATM 23 C CBH Y01 . . . R 6 198.338 178.542 191.361 1 28.61 ? CBH Y01 2317 A 1 HETATM 24 C CAD Y01 . . . R 6 197.689 179.862 191.799 1 28.61 ? CAD Y01 2317 A 1 HETATM 25 C CAT Y01 . . . R 6 198.344 177.615 192.587 1 28.61 ? CAT Y01 2317 A 1 HETATM 26 C CAR Y01 . . . R 6 199.051 178.308 193.755 1 28.61 ? CAR Y01 2317 A 1 HETATM 27 C CBC Y01 . . . R 6 200.412 178.796 193.373 1 28.61 ? CBC Y01 2317 A 1 HETATM 28 O OAW Y01 . . . R 6 200.9 179.627 194.443 1 28.61 ? OAW Y01 2317 A 1 HETATM 29 C CAY Y01 . . . R 6 200.868 179.052 195.744 1 28.61 ? CAY Y01 2317 A 1 HETATM 30 O OAG Y01 . . . R 6 200.654 177.891 195.893 1 28.61 ? OAG Y01 2317 A 1 HETATM 31 C CAM Y01 . . . R 6 201.12 179.948 196.981 1 28.61 ? CAM Y01 2317 A 1 HETATM 32 C CAL Y01 . . . R 6 200.701 179.188 198.255 1 28.61 ? CAL Y01 2317 A 1 HETATM 33 C CAX Y01 . . . R 6 200.619 180.13 199.465 1 28.61 ? CAX Y01 2317 A 1 HETATM 34 O OAH Y01 . . . R 6 201.415 179.979 200.429 1 28.61 ? OAH Y01 2317 A 1 HETATM 35 O OAF Y01 . . . R 6 199.755 181.044 199.494 1 28.61 ? OAF Y01 2317 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 35 #