data_6KZP
#
_model_server_result.job_id            LZsz1NIY1b4K37Aw1GO9lw 
_model_server_result.datetime_utc      '2024-10-18 16:21:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6kzp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"S","auth_seq_id":2318}' 
#
_entry.id    6KZP 
#
_exptl.entry_id    6KZP 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              486.726 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CHOLESTEROL HEMISUCCINATE' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6KZP 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6KZP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 Q N N 
? 6 R N N 
? 6 S N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 260 A CYS 241 1_555 A SG CYS 301 A CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf2 A SG CYS 290 A CYS 271 1_555 A SG CYS 342 A CYS 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 A SG CYS 1303 A CYS 1418 1_555 A SG CYS 1317 A CYS 1432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf4 A SG CYS 1632 A CYS 1747 1_555 A SG CYS 1638 A CYS 1753 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
covale ? covale1 A ND2 ASN 265 A ASN 246 1_555 D C1 NAG . A NAG 2303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? 
covale ? covale2 A ND2 ASN 341 A ASN 322 1_555 E C1 NAG . A NAG 2304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
covale ? covale3 A ND2 ASN 1310 A ASN 1425 1_555 F C1 NAG . A NAG 2305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale4 A ND2 ASN 1313 A ASN 1428 1_555 G C1 NAG . A NAG 2306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? 
metalc ? metalc1 A OE1 GLU 373 A GLU 354 1_555 B CA CA . A CA 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.819 ? 
metalc ? metalc2 A OE2 GLU 373 A GLU 354 1_555 B CA CA . A CA 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.989 ? 
metalc ? metalc3 A OE1 GLU 373 A GLU 354 1_555 C CA CA . A CA 2302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.945 ? 
metalc ? metalc4 A OE1 GLU 808 A GLU 923 1_555 B CA CA . A CA 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? 
metalc ? metalc5 A OD1 ASP 1348 A ASP 1463 1_555 B CA CA . A CA 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? 
#
_chem_comp.formula           'C31 H50 O4' 
_chem_comp.formula_weight    486.726 
_chem_comp.id                Y01 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CHOLESTEROL HEMISUCCINATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6KZP 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 2301 2001 CA CA . 
C 2 CA A 1 2302 2002 CA CA . 
D 3 NAG A 1 2303 1 NAG NAG . 
E 3 NAG A 1 2304 2 NAG NAG . 
F 3 NAG A 1 2305 3 NAG NAG . 
G 3 NAG A 1 2306 4 NAG NAG . 
H 4 DZR A 1 2307 1 DZR Z . 
I 5 3PE A 1 2308 15 3PE 3PE . 
J 5 3PE A 1 2309 16 3PE 3PE . 
K 5 3PE A 1 2310 17 3PE 3PE . 
L 5 3PE A 1 2311 18 3PE 3PE . 
M 5 3PE A 1 2312 21 3PE 3PE . 
N 5 3PE A 1 2313 22 3PE 3PE . 
O 5 3PE A 1 2314 23 3PE 3PE . 
P 5 3PE A 1 2315 24 3PE 3PE . 
Q 6 Y01 A 1 2316 1 Y01 LIG . 
R 6 Y01 A 1 2317 2 Y01 LIG . 
S 6 Y01 A 1 2318 3 Y01 LIG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA Y01 . . . S 6 168.072 150.04 179.862 1 25.49 ? CAA Y01 2318 A 1 
HETATM 2 C CBA Y01 . . . S 6 169.308 149.336 180.449 1 25.49 ? CBA Y01 2318 A 1 
HETATM 3 C CAB Y01 . . . S 6 170.526 149.674 179.586 1 25.49 ? CAB Y01 2318 A 1 
HETATM 4 C CAN Y01 . . . S 6 169.104 147.802 180.42 1 25.49 ? CAN Y01 2318 A 1 
HETATM 5 C CAJ Y01 . . . S 6 169.1 147.189 181.859 1 25.49 ? CAJ Y01 2318 A 1 
HETATM 6 C CAO Y01 . . . S 6 170.482 147.351 182.574 1 25.49 ? CAO Y01 2318 A 1 
HETATM 7 C CBB Y01 . . . S 6 170.562 146.626 184.01 1 25.49 ? CBB Y01 2318 A 1 
HETATM 8 C CAC Y01 . . . S 6 169.115 146.361 184.488 1 25.49 ? CAC Y01 2318 A 1 
HETATM 9 C CBE Y01 . . . S 6 171.31 145.382 184.027 1 25.49 ? CBE Y01 2318 A 1 
HETATM 10 C CAP Y01 . . . S 6 172.276 145.294 182.811 1 25.49 ? CAP Y01 2318 A 1 
HETATM 11 C CAQ Y01 . . . S 6 173.464 144.148 183.316 1 25.49 ? CAQ Y01 2318 A 1 
HETATM 12 C CBG Y01 . . . S 6 173.246 144.021 184.942 1 25.49 ? CBG Y01 2318 A 1 
HETATM 13 C CBI Y01 . . . S 6 172.321 145.226 185.321 1 25.49 ? CBI Y01 2318 A 1 
HETATM 14 C CAE Y01 . . . S 6 173.225 146.449 185.267 1 25.49 ? CAE Y01 2318 A 1 
HETATM 15 C CAU Y01 . . . S 6 171.854 145.155 186.656 1 25.49 ? CAU Y01 2318 A 1 
HETATM 16 C CAS Y01 . . . S 6 173.048 144.824 187.757 1 25.49 ? CAS Y01 2318 A 1 
HETATM 17 C CBF Y01 . . . S 6 173.873 143.616 187.332 1 25.49 ? CBF Y01 2318 A 1 
HETATM 18 C CBD Y01 . . . S 6 174.409 143.845 185.922 1 25.49 ? CBD Y01 2318 A 1 
HETATM 19 C CAK Y01 . . . S 6 175.397 142.657 185.391 1 25.49 ? CAK Y01 2318 A 1 
HETATM 20 C CAI Y01 . . . S 6 176.478 142.296 186.401 1 25.49 ? CAI Y01 2318 A 1 
HETATM 21 C CAZ Y01 . . . S 6 175.972 142.195 188.008 1 25.49 ? CAZ Y01 2318 A 1 
HETATM 22 C CAV Y01 . . . S 6 176.923 141.644 189.099 1 25.49 ? CAV Y01 2318 A 1 
HETATM 23 C CBH Y01 . . . S 6 175.056 143.263 188.463 1 25.49 ? CBH Y01 2318 A 1 
HETATM 24 C CAD Y01 . . . S 6 175.872 144.545 188.648 1 25.49 ? CAD Y01 2318 A 1 
HETATM 25 C CAT Y01 . . . S 6 174.381 142.896 189.797 1 25.49 ? CAT Y01 2318 A 1 
HETATM 26 C CAR Y01 . . . S 6 175.357 142.389 190.867 1 25.49 ? CAR Y01 2318 A 1 
HETATM 27 C CBC Y01 . . . S 6 176.228 141.267 190.403 1 25.49 ? CBC Y01 2318 A 1 
HETATM 28 O OAW Y01 . . . S 6 177.244 141.089 191.405 1 25.49 ? OAW Y01 2318 A 1 
HETATM 29 C CAY Y01 . . . S 6 177.379 139.788 191.97 1 25.49 ? CAY Y01 2318 A 1 
HETATM 30 O OAG Y01 . . . S 6 178.371 139.161 191.788 1 25.49 ? OAG Y01 2318 A 1 
HETATM 31 C CAM Y01 . . . S 6 176.262 139.193 192.854 1 25.49 ? CAM Y01 2318 A 1 
HETATM 32 C CAL Y01 . . . S 6 176.77 139.188 194.308 1 25.49 ? CAL Y01 2318 A 1 
HETATM 33 C CAX Y01 . . . S 6 175.796 138.427 195.221 1 25.49 ? CAX Y01 2318 A 1 
HETATM 34 O OAH Y01 . . . S 6 175.301 139.004 196.225 1 25.49 ? OAH Y01 2318 A 1 
HETATM 35 O OAF Y01 . . . S 6 175.495 137.231 194.976 1 25.49 ? OAF Y01 2318 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           328 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           35 
#