data_6L07 # _model_server_result.job_id 8R-F0Tbqwj7XlYA6ueNp2A _model_server_result.datetime_utc '2024-10-15 11:26:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6l07 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":301}' # _entry.id 6L07 # _exptl.entry_id 6L07 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 744.034 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6L07 _cell.length_a 218.191 _cell.length_b 218.191 _cell.length_c 143.798 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6L07 _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 ? tetrameric 4 author_defined_assembly 2 ? tetrameric 4 author_defined_assembly 3 ? tetrameric 4 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,I,J,Q,T 1 1 C,D,G,H,R 2 1 E,F,M,N,S,U 3 1 K,L,O,P 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 Q N N ? 4 R N N ? 4 S N N ? 4 T N N ? 4 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C1 PPI 1 I PPI 254 1_555 B N THR 2 I THR 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale2 B C2 PPI 1 I PPI 254 1_555 Q N PEE . I PEE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.473 ? covale ? covale3 D C1 PPI 1 J PPI 254 1_555 D N THR 2 J THR 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale4 D C2 PPI 1 J PPI 254 1_555 R N PEE . J PEE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.478 ? covale ? covale5 F C1 PPI 1 K PPI 254 1_555 F N THR 2 K THR 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale6 F C2 PPI 1 K PPI 254 1_555 S N PEE . K PEE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.471 ? covale ? covale7 H C PYR 1 N PYR 254 1_555 H N THR 2 N THR 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale8 J C1 PPI 1 L PPI 254 1_555 J N THR 2 L THR 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale9 J C2 PPI 1 L PPI 254 1_555 T N PEE . L PEE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.475 ? covale ? covale10 L C PYR 1 O PYR 254 1_555 L N THR 2 O THR 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale11 N C1 PPI 1 M PPI 254 1_555 N N THR 2 M THR 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale12 N C2 PPI 1 M PPI 254 1_555 U N PEE . M PEE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.471 ? covale ? covale13 P C PYR 1 P PYR 254 1_555 P N THR 2 P THR 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? # _chem_comp.formula 'C41 H78 N O8 P' _chem_comp.formula_weight 744.034 _chem_comp.id PEE _chem_comp.mon_nstd_flag n _chem_comp.name 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DOPE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C5 PEE sing 235 n n C5 C4 PEE sing 236 n n C4 O4P PEE sing 237 n n O4P P PEE sing 238 n n O1P P PEE doub 239 n n C1 O3P PEE sing 240 n n C1 C2 PEE sing 241 n n O3P P PEE sing 242 n n P O2P PEE sing 243 n n C2 C3 PEE sing 244 n n C2 O2 PEE sing 245 n n C3 O3 PEE sing 246 n n O2 C10 PEE sing 247 n n C31 C30 PEE sing 248 n n C31 C32 PEE sing 249 n n C33 C32 PEE sing 250 n n C33 C34 PEE sing 251 n n C30 O3 PEE sing 252 n n C30 O5 PEE doub 253 n n C10 O4 PEE doub 254 n n C10 C11 PEE sing 255 n n C34 C35 PEE sing 256 n n C11 C12 PEE sing 257 n n C35 C36 PEE sing 258 n n C36 C37 PEE sing 259 n n C37 C38 PEE sing 260 n n C38 C39 PEE doub 261 z n C12 C13 PEE sing 262 n n C39 C40 PEE sing 263 n n C13 C14 PEE sing 264 n n C14 C15 PEE sing 265 n n C40 C41 PEE sing 266 n n C15 C16 PEE sing 267 n n C41 C42 PEE sing 268 n n C16 C17 PEE sing 269 n n C42 C43 PEE sing 270 n n C17 C18 PEE sing 271 n n C43 C44 PEE sing 272 n n C18 C19 PEE doub 273 z n C46 C47 PEE sing 274 n n C46 C45 PEE sing 275 n n C44 C45 PEE sing 276 n n C19 C20 PEE sing 277 n n C20 C21 PEE sing 278 n n C21 C22 PEE sing 279 n n C22 C23 PEE sing 280 n n C23 C24 PEE sing 281 n n C24 C25 PEE sing 282 n n C26 C25 PEE sing 283 n n C26 C27 PEE sing 284 n n C27 H7 PEE sing 285 n n C27 H8 PEE sing 286 n n C27 H82 PEE sing 287 n n C26 H5 PEE sing 288 n n C26 H6 PEE sing 289 n n C25 H12 PEE sing 290 n n C25 H4 PEE sing 291 n n C24 H10 PEE sing 292 n n C24 H11 PEE sing 293 n n C23 H83 PEE sing 294 n n C23 H9 PEE sing 295 n n C22 H2 PEE sing 296 n n C22 H3 PEE sing 297 n n C21 H14 PEE sing 298 n n C21 H1 PEE sing 299 n n C20 H16 PEE sing 300 n n C20 H13 PEE sing 301 n n C19 H18 PEE sing 302 n n C18 H20 PEE sing 303 n n C17 H22 PEE sing 304 n n C17 H19 PEE sing 305 n n C16 H21 PEE sing 306 n n C16 H28 PEE sing 307 n n C15 H23 PEE sing 308 n n C15 H24 PEE sing 309 n n C14 H25 PEE sing 310 n n C14 H26 PEE sing 311 n n C13 H17 PEE sing 312 n n C13 H27 PEE sing 313 n n C12 H15 PEE sing 314 n n C12 H29 PEE sing 315 n n C11 H30 PEE sing 316 n n C11 H31 PEE sing 317 n n C2 H32 PEE sing 318 n n C1 H33 PEE sing 319 n n C1 H34 PEE sing 320 n n O2P H35 PEE sing 321 n n C4 H36 PEE sing 322 n n C4 H37 PEE sing 323 n n C5 H38 PEE sing 324 n n C5 H39 PEE sing 325 n n N H40 PEE sing 326 n n N H41 PEE sing 327 n n C3 H43 PEE sing 328 n n C3 H44 PEE sing 329 n n C31 H45 PEE sing 330 n n C31 H46 PEE sing 331 n n C32 H47 PEE sing 332 n n C32 H48 PEE sing 333 n n C33 H49 PEE sing 334 n n C33 H50 PEE sing 335 n n C34 H51 PEE sing 336 n n C34 H52 PEE sing 337 n n C35 H53 PEE sing 338 n n C35 H54 PEE sing 339 n n C36 H55 PEE sing 340 n n C36 H56 PEE sing 341 n n C37 H57 PEE sing 342 n n C37 H58 PEE sing 343 n n C38 H59 PEE sing 344 n n C39 H60 PEE sing 345 n n C40 H81 PEE sing 346 n n C40 H61 PEE sing 347 n n C41 H80 PEE sing 348 n n C41 H62 PEE sing 349 n n C42 H63 PEE sing 350 n n C42 H64 PEE sing 351 n n C43 H65 PEE sing 352 n n C43 H66 PEE sing 353 n n C44 H67 PEE sing 354 n n C44 H68 PEE sing 355 n n C45 H69 PEE sing 356 n n C45 H70 PEE sing 357 n n C46 H71 PEE sing 358 n n C46 H72 PEE sing 359 n n C47 H73 PEE sing 360 n n C47 H74 PEE sing 361 n n C47 H75 PEE sing 362 n n # _atom_sites.entry_id 6L07 _atom_sites.fract_transf_matrix[1][1] 0.004583 _atom_sites.fract_transf_matrix[1][2] 0.002646 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005292 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006954 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Q 4 PEE I 1 301 254 PEE 0PS . R 4 PEE J 1 301 254 PEE 0PS . S 4 PEE K 1 301 254 PEE 0PS . T 4 PEE L 1 301 254 PEE 0PS . U 4 PEE M 1 301 254 PEE 0PS . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 PEE . . . R 4 146.072 -53.321 -57.318 1 110.9 ? C13 PEE 301 J 1 HETATM 2 C C12 PEE . . . R 4 146.976 -53.507 -56.105 1 118.24 ? C12 PEE 301 J 1 HETATM 3 C C11 PEE . . . R 4 147.828 -52.269 -55.856 1 141.32 ? C11 PEE 301 J 1 HETATM 4 C C10 PEE . . . R 4 147.166 -51.307 -54.893 1 144.35 ? C10 PEE 301 J 1 HETATM 5 O O4 PEE . . . R 4 145.977 -51.415 -54.619 1 138.55 ? O4 PEE 301 J 1 HETATM 6 O O2 PEE . . . R 4 147.945 -50.217 -54.305 1 134.63 ? O2 PEE 301 J 1 HETATM 7 C C2 PEE . . . R 4 148.724 -50.534 -53.135 1 142.14 ? C2 PEE 301 J 1 HETATM 8 C C1 PEE . . . R 4 147.961 -51.454 -52.192 1 145.86 ? C1 PEE 301 J 1 HETATM 9 O O3P PEE . . . R 4 146.74 -50.792 -51.869 1 149.29 ? O3P PEE 301 J 1 HETATM 10 P P PEE . . . R 4 146.648 -49.524 -50.871 1 136.69 ? P PEE 301 J 1 HETATM 11 O O2P PEE . . . R 4 147.553 -48.381 -51.283 1 131.04 ? O2P PEE 301 J 1 HETATM 12 O O1P PEE . . . R 4 147.032 -49.957 -49.476 1 135.32 ? O1P PEE 301 J 1 HETATM 13 O O4P PEE . . . R 4 145.129 -48.976 -50.915 1 132.49 ? O4P PEE 301 J 1 HETATM 14 C C4 PEE . . . R 4 143.976 -49.801 -50.735 1 136.07 ? C4 PEE 301 J 1 HETATM 15 C C5 PEE . . . R 4 142.716 -48.948 -50.885 1 136.35 ? C5 PEE 301 J 1 HETATM 16 N N PEE . . . R 4 142.901 -47.64 -50.229 1 139.11 ? N PEE 301 J 1 HETATM 17 C C3 PEE . . . R 4 150.089 -51.114 -53.487 1 140.02 ? C3 PEE 301 J 1 HETATM 18 O O3 PEE . . . R 4 150.61 -50.277 -54.513 1 132.63 ? O3 PEE 301 J 1 HETATM 19 C C30 PEE . . . R 4 151.675 -50.697 -55.407 1 148.24 ? C30 PEE 301 J 1 HETATM 20 O O5 PEE . . . R 4 151.418 -50.82 -56.596 1 150.62 ? O5 PEE 301 J 1 HETATM 21 C C31 PEE . . . R 4 153.061 -50.956 -54.858 1 156.63 ? C31 PEE 301 J 1 HETATM 22 C C32 PEE . . . R 4 154.043 -51.398 -55.942 1 158.35 ? C32 PEE 301 J 1 HETATM 23 C C33 PEE . . . R 4 154.53 -50.231 -56.796 1 150.09 ? C33 PEE 301 J 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #