data_6L07
#
_model_server_result.job_id            nEiSmB5ZUn40QJywl5ZzDA 
_model_server_result.datetime_utc      '2024-12-22 05:28:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6l07 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"S","auth_seq_id":301}' 
#
_entry.id    6L07 
#
_exptl.entry_id    6L07 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              744.034 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-dioleoyl-sn-glycero-3-phosphoethanolamine 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6L07 
_cell.length_a            218.191 
_cell.length_b            218.191 
_cell.length_c            143.798 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6L07 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? tetrameric 4 author_defined_assembly 1 
? tetrameric 4 author_defined_assembly 2 
? tetrameric 4 author_defined_assembly 3 
? tetrameric 4 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,I,J,Q,T 1 1 
C,D,G,H,R 2 1 
E,F,M,N,S,U 3 1 
K,L,O,P 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 Q N N 
? 4 R N N 
? 4 S N N 
? 4 T N N 
? 4 U N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C1 PPI 1 I PPI 254 1_555 B N THR 2 I THR 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? 
covale ? covale2 B C2 PPI 1 I PPI 254 1_555 Q N PEE . I PEE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.473 ? 
covale ? covale3 D C1 PPI 1 J PPI 254 1_555 D N THR 2 J THR 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? 
covale ? covale4 D C2 PPI 1 J PPI 254 1_555 R N PEE . J PEE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.478 ? 
covale ? covale5 F C1 PPI 1 K PPI 254 1_555 F N THR 2 K THR 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? 
covale ? covale6 F C2 PPI 1 K PPI 254 1_555 S N PEE . K PEE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.471 ? 
covale ? covale7 H C PYR 1 N PYR 254 1_555 H N THR 2 N THR 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? 
covale ? covale8 J C1 PPI 1 L PPI 254 1_555 J N THR 2 L THR 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? 
covale ? covale9 J C2 PPI 1 L PPI 254 1_555 T N PEE . L PEE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.475 ? 
covale ? covale10 L C PYR 1 O PYR 254 1_555 L N THR 2 O THR 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? 
covale ? covale11 N C1 PPI 1 M PPI 254 1_555 N N THR 2 M THR 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? 
covale ? covale12 N C2 PPI 1 M PPI 254 1_555 U N PEE . M PEE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.471 ? 
covale ? covale13 P C PYR 1 P PYR 254 1_555 P N THR 2 P THR 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? 
#
_chem_comp.formula           'C41 H78 N O8 P' 
_chem_comp.formula_weight    744.034 
_chem_comp.id                PEE 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              1,2-dioleoyl-sn-glycero-3-phosphoethanolamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     DOPE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N C5 PEE sing 235 n n 
C5 C4 PEE sing 236 n n 
C4 O4P PEE sing 237 n n 
O4P P PEE sing 238 n n 
O1P P PEE doub 239 n n 
C1 O3P PEE sing 240 n n 
C1 C2 PEE sing 241 n n 
O3P P PEE sing 242 n n 
P O2P PEE sing 243 n n 
C2 C3 PEE sing 244 n n 
C2 O2 PEE sing 245 n n 
C3 O3 PEE sing 246 n n 
O2 C10 PEE sing 247 n n 
C31 C30 PEE sing 248 n n 
C31 C32 PEE sing 249 n n 
C33 C32 PEE sing 250 n n 
C33 C34 PEE sing 251 n n 
C30 O3 PEE sing 252 n n 
C30 O5 PEE doub 253 n n 
C10 O4 PEE doub 254 n n 
C10 C11 PEE sing 255 n n 
C34 C35 PEE sing 256 n n 
C11 C12 PEE sing 257 n n 
C35 C36 PEE sing 258 n n 
C36 C37 PEE sing 259 n n 
C37 C38 PEE sing 260 n n 
C38 C39 PEE doub 261 z n 
C12 C13 PEE sing 262 n n 
C39 C40 PEE sing 263 n n 
C13 C14 PEE sing 264 n n 
C14 C15 PEE sing 265 n n 
C40 C41 PEE sing 266 n n 
C15 C16 PEE sing 267 n n 
C41 C42 PEE sing 268 n n 
C16 C17 PEE sing 269 n n 
C42 C43 PEE sing 270 n n 
C17 C18 PEE sing 271 n n 
C43 C44 PEE sing 272 n n 
C18 C19 PEE doub 273 z n 
C46 C47 PEE sing 274 n n 
C46 C45 PEE sing 275 n n 
C44 C45 PEE sing 276 n n 
C19 C20 PEE sing 277 n n 
C20 C21 PEE sing 278 n n 
C21 C22 PEE sing 279 n n 
C22 C23 PEE sing 280 n n 
C23 C24 PEE sing 281 n n 
C24 C25 PEE sing 282 n n 
C26 C25 PEE sing 283 n n 
C26 C27 PEE sing 284 n n 
C27 H7 PEE sing 285 n n 
C27 H8 PEE sing 286 n n 
C27 H82 PEE sing 287 n n 
C26 H5 PEE sing 288 n n 
C26 H6 PEE sing 289 n n 
C25 H12 PEE sing 290 n n 
C25 H4 PEE sing 291 n n 
C24 H10 PEE sing 292 n n 
C24 H11 PEE sing 293 n n 
C23 H83 PEE sing 294 n n 
C23 H9 PEE sing 295 n n 
C22 H2 PEE sing 296 n n 
C22 H3 PEE sing 297 n n 
C21 H14 PEE sing 298 n n 
C21 H1 PEE sing 299 n n 
C20 H16 PEE sing 300 n n 
C20 H13 PEE sing 301 n n 
C19 H18 PEE sing 302 n n 
C18 H20 PEE sing 303 n n 
C17 H22 PEE sing 304 n n 
C17 H19 PEE sing 305 n n 
C16 H21 PEE sing 306 n n 
C16 H28 PEE sing 307 n n 
C15 H23 PEE sing 308 n n 
C15 H24 PEE sing 309 n n 
C14 H25 PEE sing 310 n n 
C14 H26 PEE sing 311 n n 
C13 H17 PEE sing 312 n n 
C13 H27 PEE sing 313 n n 
C12 H15 PEE sing 314 n n 
C12 H29 PEE sing 315 n n 
C11 H30 PEE sing 316 n n 
C11 H31 PEE sing 317 n n 
C2 H32 PEE sing 318 n n 
C1 H33 PEE sing 319 n n 
C1 H34 PEE sing 320 n n 
O2P H35 PEE sing 321 n n 
C4 H36 PEE sing 322 n n 
C4 H37 PEE sing 323 n n 
C5 H38 PEE sing 324 n n 
C5 H39 PEE sing 325 n n 
N H40 PEE sing 326 n n 
N H41 PEE sing 327 n n 
C3 H43 PEE sing 328 n n 
C3 H44 PEE sing 329 n n 
C31 H45 PEE sing 330 n n 
C31 H46 PEE sing 331 n n 
C32 H47 PEE sing 332 n n 
C32 H48 PEE sing 333 n n 
C33 H49 PEE sing 334 n n 
C33 H50 PEE sing 335 n n 
C34 H51 PEE sing 336 n n 
C34 H52 PEE sing 337 n n 
C35 H53 PEE sing 338 n n 
C35 H54 PEE sing 339 n n 
C36 H55 PEE sing 340 n n 
C36 H56 PEE sing 341 n n 
C37 H57 PEE sing 342 n n 
C37 H58 PEE sing 343 n n 
C38 H59 PEE sing 344 n n 
C39 H60 PEE sing 345 n n 
C40 H81 PEE sing 346 n n 
C40 H61 PEE sing 347 n n 
C41 H80 PEE sing 348 n n 
C41 H62 PEE sing 349 n n 
C42 H63 PEE sing 350 n n 
C42 H64 PEE sing 351 n n 
C43 H65 PEE sing 352 n n 
C43 H66 PEE sing 353 n n 
C44 H67 PEE sing 354 n n 
C44 H68 PEE sing 355 n n 
C45 H69 PEE sing 356 n n 
C45 H70 PEE sing 357 n n 
C46 H71 PEE sing 358 n n 
C46 H72 PEE sing 359 n n 
C47 H73 PEE sing 360 n n 
C47 H74 PEE sing 361 n n 
C47 H75 PEE sing 362 n n 
#
_atom_sites.entry_id                     6L07 
_atom_sites.fract_transf_matrix[1][1]    0.004583 
_atom_sites.fract_transf_matrix[1][2]    0.002646 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005292 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006954 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
Q 4 PEE I 1 301 254 PEE 0PS . 
R 4 PEE J 1 301 254 PEE 0PS . 
S 4 PEE K 1 301 254 PEE 0PS . 
T 4 PEE L 1 301 254 PEE 0PS . 
U 4 PEE M 1 301 254 PEE 0PS . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C13 PEE . . . S 4 89.97 -4.883 -53.247 1 105.06 ? C13 PEE 301 K 1 
HETATM 2 C C12 PEE . . . S 4 89.548 -3.535 -52.672 1 114.53 ? C12 PEE 301 K 1 
HETATM 3 C C11 PEE . . . S 4 88.049 -3.477 -52.403 1 121.76 ? C11 PEE 301 K 1 
HETATM 4 C C10 PEE . . . S 4 87.801 -2.484 -51.293 1 132.45 ? C10 PEE 301 K 1 
HETATM 5 O O4 PEE . . . S 4 88.713 -1.759 -50.924 1 135.44 ? O4 PEE 301 K 1 
HETATM 6 O O2 PEE . . . S 4 86.475 -2.443 -50.676 1 135.26 ? O2 PEE 301 K 1 
HETATM 7 C C2 PEE . . . S 4 85.934 -1.182 -50.249 1 130.43 ? C2 PEE 301 K 1 
HETATM 8 C C1 PEE . . . S 4 86.528 -0.79 -48.904 1 131.22 ? C1 PEE 301 K 1 
HETATM 9 O O3P PEE . . . S 4 85.959 0.445 -48.478 1 129.83 ? O3P PEE 301 K 1 
HETATM 10 P P PEE . . . S 4 86.783 1.83 -48.454 1 156.39 ? P PEE 301 K 1 
HETATM 11 O O2P PEE . . . S 4 85.752 2.93 -48.545 1 130.36 ? O2P PEE 301 K 1 
HETATM 12 O O1P PEE . . . S 4 87.751 1.945 -49.613 1 128.15 ? O1P PEE 301 K 1 
HETATM 13 O O4P PEE . . . S 4 87.619 1.909 -47.076 1 132.68 ? O4P PEE 301 K 1 
HETATM 14 C C4 PEE . . . S 4 88.476 0.834 -46.688 1 127.34 ? C4 PEE 301 K 1 
HETATM 15 C C5 PEE . . . S 4 88.154 0.388 -45.27 1 131.26 ? C5 PEE 301 K 1 
HETATM 16 N N PEE . . . S 4 88.897 1.237 -44.325 1 130.94 ? N PEE 301 K 1 
HETATM 17 C C3 PEE . . . S 4 86.113 -0.051 -51.263 1 132.91 ? C3 PEE 301 K 1 
HETATM 18 O O3 PEE . . . S 4 85.967 -0.539 -52.59 1 143.86 ? O3 PEE 301 K 1 
HETATM 19 C C30 PEE . . . S 4 84.743 -1.226 -52.964 1 142.04 ? C30 PEE 301 K 1 
HETATM 20 O O5 PEE . . . S 4 84.74 -2.446 -52.967 1 148.42 ? O5 PEE 301 K 1 
HETATM 21 C C31 PEE . . . S 4 83.506 -0.424 -53.313 1 123.65 ? C31 PEE 301 K 1 
HETATM 22 C C32 PEE . . . S 4 82.76 -0.996 -54.516 1 123.44 ? C32 PEE 301 K 1 
HETATM 23 C C33 PEE . . . S 4 81.95 -2.245 -54.187 1 114.56 ? C33 PEE 301 K 1 
#
_model_server_stats.io_time_ms              89 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    91 
_model_server_stats.query_time_ms           351 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           23 
#