data_6L0K
#
_model_server_result.job_id            s_WCQLRpufbDwOXcMBYsgQ 
_model_server_result.datetime_utc      '2024-10-20 00:54:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6l0k 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":403}' 
#
_entry.id    6L0K 
#
_exptl.entry_id    6L0K 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              134.087 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-2-hydroxybutanedioic acid' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.38 
_cell.angle_gamma         90 
_cell.entry_id            6L0K 
_cell.length_a            85.824 
_cell.length_b            88.856 
_cell.length_c            103.751 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6L0K 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,G,K,L,M 1 1 
B,D,H,I,J,N,O,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 J N N 
? 3 M N N 
? 3 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C VAL 97 A VAL 97 1_555 A N KCX 98 A KCX 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale2 A C KCX 98 A KCX 98 1_555 A N CYS 99 A CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale3 B C VAL 97 B VAL 97 1_555 B N KCX 98 B KCX 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale4 B C KCX 98 B KCX 98 1_555 B N CYS 99 B CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale5 C C VAL 97 C VAL 97 1_555 C N KCX 98 C KCX 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale6 C C KCX 98 C KCX 98 1_555 C N CYS 99 C CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale7 D C VAL 97 D VAL 97 1_555 D N KCX 98 D KCX 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale8 D C KCX 98 D KCX 98 1_555 D N CYS 99 D CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
metalc ? metalc1 A NE2 HIS 14 A HIS 14 1_555 E ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
metalc ? metalc2 A NE2 HIS 16 A HIS 16 1_555 E ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
metalc ? metalc3 A OQ1 KCX 98 A KCX 98 1_555 E ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? 
metalc ? metalc4 A OQ2 KCX 98 A KCX 98 1_555 F ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? 
metalc ? metalc5 A ND1 HIS 137 A HIS 137 1_555 F ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? 
metalc ? metalc6 A NE2 HIS 180 A HIS 180 1_555 F ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
metalc ? metalc7 A OD1 ASP 258 A ASP 258 1_555 E ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? 
metalc ? metalc8 F ZN ZN . A ZN 402 1_555 G O1A LMR . A LMR 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? 
metalc ? metalc9 B NE2 HIS 14 B HIS 14 1_555 H ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc10 B NE2 HIS 16 B HIS 16 1_555 H ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc11 B OQ2 KCX 98 B KCX 98 1_555 H ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? 
metalc ? metalc12 B OQ1 KCX 98 B KCX 98 1_555 I ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? 
metalc ? metalc13 B ND1 HIS 137 B HIS 137 1_555 I ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
metalc ? metalc14 B NE2 HIS 180 B HIS 180 1_555 I ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
metalc ? metalc15 B OD1 ASP 258 B ASP 258 1_555 H ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? 
metalc ? metalc16 H ZN ZN . B ZN 401 1_555 J O1A LMR . B LMR 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
metalc ? metalc17 I ZN ZN . B ZN 402 1_555 J O1B LMR . B LMR 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.651 ? 
metalc ? metalc18 C NE2 HIS 14 C HIS 14 1_555 L ZN ZN . C ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
metalc ? metalc19 C NE2 HIS 16 C HIS 16 1_555 L ZN ZN . C ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
metalc ? metalc20 C OQ2 KCX 98 C KCX 98 1_555 K ZN ZN . C ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? 
metalc ? metalc21 C OQ1 KCX 98 C KCX 98 1_555 L ZN ZN . C ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
metalc ? metalc22 C ND1 HIS 137 C HIS 137 1_555 K ZN ZN . C ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? 
metalc ? metalc23 C NE2 HIS 180 C HIS 180 1_555 K ZN ZN . C ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
metalc ? metalc24 C OD1 ASP 258 C ASP 258 1_555 L ZN ZN . C ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? 
metalc ? metalc25 D NE2 HIS 14 D HIS 14 1_555 O ZN ZN . D ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
metalc ? metalc26 D NE2 HIS 16 D HIS 16 1_555 O ZN ZN . D ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
metalc ? metalc27 D OQ1 KCX 98 D KCX 98 1_555 N ZN ZN . D ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? 
metalc ? metalc28 D OQ2 KCX 98 D KCX 98 1_555 O ZN ZN . D ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? 
metalc ? metalc29 D ND1 HIS 137 D HIS 137 1_555 N ZN ZN . D ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? 
metalc ? metalc30 D NE2 HIS 180 D HIS 180 1_555 N ZN ZN . D ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
metalc ? metalc31 D OD1 ASP 258 D ASP 258 1_555 O ZN ZN . D ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? 
metalc ? metalc32 O ZN ZN . D ZN 402 1_555 P O1B LMR . D LMR 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? 
#
_chem_comp.formula           'C4 H6 O5' 
_chem_comp.formula_weight    134.087 
_chem_comp.id                LMR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-2-hydroxybutanedioic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     L-Malate 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1A LMR doub 218 n n 
C1 O1B LMR sing 219 n n 
C1 C2 LMR sing 220 n n 
C2 O2 LMR sing 221 n n 
C2 C3 LMR sing 222 n n 
C3 C4 LMR sing 223 n n 
C4 O4A LMR sing 224 n n 
C4 O4B LMR doub 225 n n 
C2 H2 LMR sing 226 n n 
O2 HO2 LMR sing 227 n n 
C3 H3 LMR sing 228 n n 
C3 H3A LMR sing 229 n n 
O1B H4 LMR sing 230 n n 
O4A H5 LMR sing 231 n n 
#
_atom_sites.entry_id                     6L0K 
_atom_sites.fract_transf_matrix[1][1]    0.011652 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001097 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011254 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009681 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ZN A 1 401 1 ZN ZN . 
F 2 ZN A 1 402 2 ZN ZN . 
G 3 LMR A 1 403 101 LMR LMR . 
H 2 ZN B 1 401 3 ZN ZN . 
I 2 ZN B 1 402 4 ZN ZN . 
J 3 LMR B 1 403 102 LMR LMR . 
K 2 ZN C 1 401 9 ZN ZN . 
L 2 ZN C 1 402 10 ZN ZN . 
M 3 LMR C 1 403 105 LMR LMR . 
N 2 ZN D 1 401 7 ZN ZN . 
O 2 ZN D 1 402 8 ZN ZN . 
P 3 LMR D 1 403 104 LMR LMR . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 LMR . . . M 3 5.61 26.709 23.932 1 44.32 ? C1 LMR 403 C 1 
HETATM 2 O O1A LMR . . . M 3 5.366 25.505 23.666 1 45.58 ? O1A LMR 403 C 1 
HETATM 3 O O1B LMR . . . M 3 5.258 27.163 25.052 1 40.35 ? O1B LMR 403 C 1 
HETATM 4 C C2 LMR . . . M 3 6.322 27.604 22.911 1 44.54 ? C2 LMR 403 C 1 
HETATM 5 O O2 LMR . . . M 3 6.739 26.838 21.812 1 36.17 ? O2 LMR 403 C 1 
HETATM 6 C C3 LMR . . . M 3 5.362 28.692 22.435 1 41.61 ? C3 LMR 403 C 1 
HETATM 7 C C4 LMR . . . M 3 6.113 29.983 22.108 1 43.03 ? C4 LMR 403 C 1 
HETATM 8 O O4A LMR . . . M 3 5.76 31.066 22.647 1 39.99 ? O4A LMR 403 C 1 
HETATM 9 O O4B LMR . . . M 3 7.078 29.969 21.298 1 43.56 ? O4B LMR 403 C 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           9 
#