data_6L0P
#
_model_server_result.job_id            nkrm5M9FS7aMi2aZ8xH71A 
_model_server_result.datetime_utc      '2024-10-18 12:28:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6l0p 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":402}' 
#
_entry.id    6L0P 
#
_exptl.entry_id    6L0P 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6L0P 
_cell.length_a            75.36 
_cell.length_b            75.36 
_cell.length_c            276.04 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6L0P 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        78 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,K 1 1 
B,G,L 2 1 
C,H,I,M 3 1 
D,J,N 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 36 A CYS 36 1_555 A SG CYS 64 A CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf2 B SG CYS 36 B CYS 36 1_555 B SG CYS 64 B CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf3 C SG CYS 36 C CYS 36 1_555 C SG CYS 64 C CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
disulf ? disulf4 D SG CYS 36 D CYS 36 1_555 D SG CYS 64 D CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 279 n n 
C1 H11 MPD sing 280 n n 
C1 H12 MPD sing 281 n n 
C1 H13 MPD sing 282 n n 
C2 O2 MPD sing 283 n n 
C2 CM MPD sing 284 n n 
C2 C3 MPD sing 285 n n 
O2 HO2 MPD sing 286 n n 
CM HM1 MPD sing 287 n n 
CM HM2 MPD sing 288 n n 
CM HM3 MPD sing 289 n n 
C3 C4 MPD sing 290 n n 
C3 H31 MPD sing 291 n n 
C3 H32 MPD sing 292 n n 
C4 O4 MPD sing 293 n n 
C4 C5 MPD sing 294 n n 
C4 H4 MPD sing 295 n n 
O4 HO4 MPD sing 296 n n 
C5 H51 MPD sing 297 n n 
C5 H52 MPD sing 298 n n 
C5 H53 MPD sing 299 n n 
#
_atom_sites.entry_id                     6L0P 
_atom_sites.fract_transf_matrix[1][1]    0.01327 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01327 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003623 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 E1U A 1 401 401 E1U 9PS . 
F 3 MPD A 1 402 1 MPD MPD . 
G 2 E1U B 1 401 402 E1U 9PS . 
H 2 E1U C 1 401 403 E1U 9PS . 
I 3 MPD C 1 402 2 MPD MPD . 
J 2 E1U D 1 401 404 E1U 9PS . 
K 4 HOH A 1 501 12 HOH HOH . 
K 4 HOH A 2 502 4 HOH HOH . 
K 4 HOH A 3 503 40 HOH HOH . 
K 4 HOH A 4 504 44 HOH HOH . 
K 4 HOH A 5 505 87 HOH HOH . 
K 4 HOH A 6 506 2 HOH HOH . 
K 4 HOH A 7 507 105 HOH HOH . 
K 4 HOH A 8 508 80 HOH HOH . 
K 4 HOH A 9 509 102 HOH HOH . 
K 4 HOH A 10 510 7 HOH HOH . 
K 4 HOH A 11 511 100 HOH HOH . 
K 4 HOH A 12 512 35 HOH HOH . 
K 4 HOH A 13 513 54 HOH HOH . 
K 4 HOH A 14 514 39 HOH HOH . 
K 4 HOH A 15 515 32 HOH HOH . 
K 4 HOH A 16 516 125 HOH HOH . 
K 4 HOH A 17 517 121 HOH HOH . 
K 4 HOH A 18 518 68 HOH HOH . 
K 4 HOH A 19 519 120 HOH HOH . 
K 4 HOH A 20 520 85 HOH HOH . 
K 4 HOH A 21 521 86 HOH HOH . 
K 4 HOH A 22 522 75 HOH HOH . 
K 4 HOH A 23 523 59 HOH HOH . 
K 4 HOH A 24 524 46 HOH HOH . 
K 4 HOH A 25 525 115 HOH HOH . 
K 4 HOH A 26 526 3 HOH HOH . 
K 4 HOH A 27 527 119 HOH HOH . 
K 4 HOH A 28 528 118 HOH HOH . 
K 4 HOH A 29 529 122 HOH HOH . 
K 4 HOH A 30 530 9 HOH HOH . 
K 4 HOH A 31 531 23 HOH HOH . 
L 4 HOH B 1 501 89 HOH HOH . 
L 4 HOH B 2 502 21 HOH HOH . 
L 4 HOH B 3 503 72 HOH HOH . 
L 4 HOH B 4 504 48 HOH HOH . 
L 4 HOH B 5 505 20 HOH HOH . 
L 4 HOH B 6 506 14 HOH HOH . 
L 4 HOH B 7 507 113 HOH HOH . 
L 4 HOH B 8 508 41 HOH HOH . 
L 4 HOH B 9 509 49 HOH HOH . 
L 4 HOH B 10 510 22 HOH HOH . 
L 4 HOH B 11 511 51 HOH HOH . 
L 4 HOH B 12 512 64 HOH HOH . 
L 4 HOH B 13 513 99 HOH HOH . 
L 4 HOH B 14 514 24 HOH HOH . 
L 4 HOH B 15 515 37 HOH HOH . 
L 4 HOH B 16 516 78 HOH HOH . 
L 4 HOH B 17 517 63 HOH HOH . 
L 4 HOH B 18 518 117 HOH HOH . 
L 4 HOH B 19 519 103 HOH HOH . 
L 4 HOH B 20 520 93 HOH HOH . 
L 4 HOH B 21 521 15 HOH HOH . 
L 4 HOH B 22 522 123 HOH HOH . 
L 4 HOH B 23 523 47 HOH HOH . 
L 4 HOH B 24 524 28 HOH HOH . 
L 4 HOH B 25 525 65 HOH HOH . 
L 4 HOH B 26 526 60 HOH HOH . 
L 4 HOH B 27 527 83 HOH HOH . 
L 4 HOH B 28 528 16 HOH HOH . 
L 4 HOH B 29 529 50 HOH HOH . 
L 4 HOH B 30 530 97 HOH HOH . 
M 4 HOH C 1 501 53 HOH HOH . 
M 4 HOH C 2 502 25 HOH HOH . 
M 4 HOH C 3 503 34 HOH HOH . 
M 4 HOH C 4 504 76 HOH HOH . 
M 4 HOH C 5 505 33 HOH HOH . 
M 4 HOH C 6 506 110 HOH HOH . 
M 4 HOH C 7 507 98 HOH HOH . 
M 4 HOH C 8 508 30 HOH HOH . 
M 4 HOH C 9 509 104 HOH HOH . 
M 4 HOH C 10 510 38 HOH HOH . 
M 4 HOH C 11 511 10 HOH HOH . 
M 4 HOH C 12 512 70 HOH HOH . 
M 4 HOH C 13 513 56 HOH HOH . 
M 4 HOH C 14 514 31 HOH HOH . 
M 4 HOH C 15 515 84 HOH HOH . 
M 4 HOH C 16 516 94 HOH HOH . 
M 4 HOH C 17 517 26 HOH HOH . 
M 4 HOH C 18 518 69 HOH HOH . 
M 4 HOH C 19 519 5 HOH HOH . 
M 4 HOH C 20 520 73 HOH HOH . 
M 4 HOH C 21 521 90 HOH HOH . 
M 4 HOH C 22 522 81 HOH HOH . 
M 4 HOH C 23 523 92 HOH HOH . 
M 4 HOH C 24 524 29 HOH HOH . 
M 4 HOH C 25 525 71 HOH HOH . 
M 4 HOH C 26 526 58 HOH HOH . 
M 4 HOH C 27 527 108 HOH HOH . 
M 4 HOH C 28 528 116 HOH HOH . 
M 4 HOH C 29 529 45 HOH HOH . 
M 4 HOH C 30 530 67 HOH HOH . 
M 4 HOH C 31 531 11 HOH HOH . 
N 4 HOH D 1 501 36 HOH HOH . 
N 4 HOH D 2 502 107 HOH HOH . 
N 4 HOH D 3 503 114 HOH HOH . 
N 4 HOH D 4 504 79 HOH HOH . 
N 4 HOH D 5 505 1 HOH HOH . 
N 4 HOH D 6 506 57 HOH HOH . 
N 4 HOH D 7 507 17 HOH HOH . 
N 4 HOH D 8 508 61 HOH HOH . 
N 4 HOH D 9 509 106 HOH HOH . 
N 4 HOH D 10 510 18 HOH HOH . 
N 4 HOH D 11 511 42 HOH HOH . 
N 4 HOH D 12 512 88 HOH HOH . 
N 4 HOH D 13 513 101 HOH HOH . 
N 4 HOH D 14 514 13 HOH HOH . 
N 4 HOH D 15 515 66 HOH HOH . 
N 4 HOH D 16 516 62 HOH HOH . 
N 4 HOH D 17 517 124 HOH HOH . 
N 4 HOH D 18 518 96 HOH HOH . 
N 4 HOH D 19 519 109 HOH HOH . 
N 4 HOH D 20 520 74 HOH HOH . 
N 4 HOH D 21 521 91 HOH HOH . 
N 4 HOH D 22 522 8 HOH HOH . 
N 4 HOH D 23 523 112 HOH HOH . 
N 4 HOH D 24 524 43 HOH HOH . 
N 4 HOH D 25 525 82 HOH HOH . 
N 4 HOH D 26 526 111 HOH HOH . 
N 4 HOH D 27 527 27 HOH HOH . 
N 4 HOH D 28 528 55 HOH HOH . 
N 4 HOH D 29 529 19 HOH HOH . 
N 4 HOH D 30 530 52 HOH HOH . 
N 4 HOH D 31 531 6 HOH HOH . 
N 4 HOH D 32 532 77 HOH HOH . 
N 4 HOH D 33 533 95 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . F 3 -11.848 4.028 -12.509 1 33.87 ? C1 MPD 402 A 1 
HETATM 2 C C2 MPD . . . F 3 -12.966 3.01 -12.681 1 34.04 ? C2 MPD 402 A 1 
HETATM 3 O O2 MPD . . . F 3 -12.939 2.13 -11.546 1 37.12 ? O2 MPD 402 A 1 
HETATM 4 C CM MPD . . . F 3 -14.324 3.713 -12.645 1 33.98 ? CM MPD 402 A 1 
HETATM 5 C C3 MPD . . . F 3 -12.634 2.133 -13.907 1 35.75 ? C3 MPD 402 A 1 
HETATM 6 C C4 MPD . . . F 3 -13.017 2.629 -15.324 1 36.12 ? C4 MPD 402 A 1 
HETATM 7 O O4 MPD . . . F 3 -12.13 3.67 -15.719 1 37.57 ? O4 MPD 402 A 1 
HETATM 8 C C5 MPD . . . F 3 -12.976 1.542 -16.403 1 36.96 ? C5 MPD 402 A 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           254 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           8 
#